| Gene: Rab3gap1 | ID: uc007clc.1_intron_10_0_chr1_129816219_f.5p | SPECIES: mm9 |
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(1) OTHER.mut |
(1) PIWI.ip |
(8) TESTES |
| CCATTGGTCGGTTAGAGTTCGGAAAGCTGATAATCCCCAGTGCTTACTAGGTAGGTACACTCTGTTCCTTTTCTGGAAATTTCCAAATTGCAATGCTGAATACATGTCACCTATTCAAAGTATTGTTTTACATTTTCATAGCATTCTCAGTGTGTAGAAAAAGAATTTACCAAGTAAGTGAATCTTTTATTAACAGCAATAGCAGCATTTCTTCCCTTTAATGAATCTATACTCCAGCATTCTCTGTGAT |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR037900(GSM510436) testes_rep1. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................GTAGGTACACTCTGTTCCTTTTCTGGAAATTTCCAAATTGCAATGCTGAATA.................................................................................................................................................... | 52 | 1 | 40.00 | 40.00 | 40.00 | - | - | - | - | - | - | - |
| ....TGGTCGGTTAGAGTTCGGAAAGCTGA............................................................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 |
| ......GTCGGTTAGAGTTCGGAAAGCTGATA.......................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - |
| ....TGGTCGGTTAGAGTTCGGAAAGCTGAT........................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - |
| CCATTGGTCGGTTAGAGTTCGGAAAGCTGATAATCCCCAGTGCTTACTAGGTAGGTACACTCTGTTCCTTTTCTGGAAATTTCCAAATTGCAATGCTGAATACATGTCACCTATTCAAAGTATTGTTTTACATTTTCATAGCATTCTCAGTGTGTAGAAAAAGAATTTACCAAGTAAGTGAATCTTTTATTAACAGCAATAGCAGCATTTCTTCCCTTTAATGAATCTATACTCCAGCATTCTCTGTGAT |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR037900(GSM510436) testes_rep1. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................................................................................................................CATTTCTTCCCTTTAAgggt............................. | 20 | gggt | 3.00 | 0.00 | - | 3.00 | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................CATTTCTTCCCTTTAATGgg........................... | 20 | gg | 2.00 | 0.00 | - | - | 2.00 | - | - | - | - | - |
| ...................................................................................................................................ATTTTCATAGCATTCTCAGTGTGTAGA............................................................................................ | 27 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - |
| ...........................................................................................................................................................................................................CATTTCTTCCCTTTAAgt............................. | 18 | gt | 2.00 | 0.00 | - | 1.00 | 1.00 | - | - | - | - | - |
| ..........................................................................................................................................................................................................CATTTCTTCCCTTTAAggt............................. | 19 | ggt | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - |