(7)
OTHER.mut
(6)
PIWI.ip
(2)
PIWI.mut
(1)
TDRD1.ip
(33)
TESTES

Sense strand
CTGATGCATTTTTCTCAGCTTGAATTTGGAAATGCTTTGAAAACTTGAGATTTCATAAAAGTGTTGGTATTATACTACAGTGGCTATTCTACCATTTCTAATTAGGCAACTAATGACTTTGGACTAAAGTTTGTTTTGAGTTGGAATGACAGGCTTCAGGTTTCTCTACATGGATTCCTGAACATGTTTGTATCTTTCAGTATGCATATTTCAGGATGGGACTCACACATCTAGACATAGTCAGGACGAA
..............................................................................((..(((......(((......(((((....))))).....)))....(((((((((............)))))))))..)))..)).....................................................................................
......................................................................71..............................................................................................167.................................................................................
Size Perfect hit Total Norm Perfect Norm SRR363963(GSM822765)
AdultGlobal 5'-RACEread_length: 105. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR363960(GSM822762)
Adult Library#1Small RNA Miwi IPDuplexed run:. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR037902(GSM510438)
testes_rep3. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
SRR363958(GSM822760)
Adult-WTSmall RNA Miwi IP. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
mjTestesWT2()
Testes Data. (testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
...........................................................................TACAGTGGCTATTCTACCATTTCTAATTAGGCAACTAATGACTTTGGACTAA........................................................................................................................... 52 1 31.00 31.00 31.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................TGGAAATGCTTTGAAAACTTGAGATTTC.................................................................................................................................................................................................... 28 1 13.00 13.00 - 7.00 - 3.00 - - 1.00 - - - - - - 1.00 - - - - 1.00 - - - - - - - - - - - - - -
........................................................................................................................................................................................................................TGGGACTCACACATCTAGACATAGTCAG...... 28 1 6.00 6.00 - 1.00 1.00 - - 1.00 - - - - - - - 1.00 - - 1.00 - - - - - - - - - - - - - - - 1.00
........................................................................................................................................TGAGTTGGAATGACAGGCTTCAGGTTT....................................................................................... 27 1 5.00 5.00 - - 1.00 4.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................TTTCAGGATGGGACTCACACATCTAGA............... 27 1 4.00 4.00 - - 2.00 - 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
..........................TGGAAATGCTTTGAAAACTTGAGATTT..................................................................................................................................................................................................... 27 1 3.00 3.00 - - 1.00 - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................TTTGAAAACTTGAGATTTCATAAAAGTG........................................................................................................................................................................................... 28 1 3.00 3.00 - - 2.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................................TTTGAAAACTTGAGATTTCATAAAAGTGT.......................................................................................................................................................................................... 29 1 2.00 2.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - -
..........................................................................................................................................................................................................TGCATATTTCAGGATGGGACTCACACA..................... 27 1 2.00 2.00 - - - - - - - - - - - - - - - 1.00 - - - - - - 1.00 - - - - - - - - - -
.....................................TGAAAACTTGAGATTTCATAAAAGTGTT......................................................................................................................................................................................... 28 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................TGAGTTGGAATGACAGGCTTCAGGTa........................................................................................ 26 a 2.00 0.00 - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................TGAGTTGGAATGACAGGCTTCAGGTTTC...................................................................................... 28 1 2.00 2.00 - - - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................TGAAAACTTGAGATTTCATAAAAGTG........................................................................................................................................................................................... 26 1 2.00 2.00 - - - - - - - - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................TATGCATATTTCAGGATGGGACTCACACA..................... 29 1 2.00 2.00 - - - - - - - - 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.........................................................................................................................................................................................................ATGCATATTTCAGGATGGGA............................. 20 1 2.00 2.00 - - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................TATTTCAGGATGGGACTCACACATCT.................. 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................TTTGAGTTGGAATGACAGGCTTCAGGT......................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................TTGTTTTGAGTTGGAATGACAGGCTTC............................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
......................................................................................................................................................................TACATGGATTCCTGAACATGTTTGTATC........................................................ 28 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................TAGGCAACTAATGACTTTGGACTAAAG......................................................................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................TGAGATTTCATAAAAGTGTTGGTATTA.................................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
..........................................................AAGTGTTGGTATTATACTACAGTGG....................................................................................................................................................................... 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................GACTCACACATCTAGACATAGTCAGGACG.. 29 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................TGAGTTGGAATGACAGGCTTCAGGTT........................................................................................ 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................TTTGAAAACTTGAGATTTCATAAAAGTGTT......................................................................................................................................................................................... 30 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................TCACACATCTAGACATAGTCAGGACGAA 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
......................................................................................................TAGGCAACTAATGACTTTGGACTAAA.......................................................................................................................... 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................TACCATTTCTAATTAGGCAACTAATGACTTT.................................................................................................................................. 31 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..........................TGGAAATGCTTTGAAAACTTGAGATTTCA................................................................................................................................................................................................... 29 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................TAATTAGGCAACTAATGACTTTGGACTAAA.......................................................................................................................... 30 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................TGCATATTTCAGGATGGGACTCACACAT.................... 28 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................TGCATATTTCAGGATGGGACTCACAC...................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
....................TGAATTTGGAAATGCTTTGAAAAC.............................................................................................................................................................................................................. 24 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................AGTTTGTTTTGAGTTGGAATGACAGGC................................................................................................ 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................TTGGAAATGCTTTGAAAACTTGAGATTTC.................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................TTTCAGGATGGGACTCACACATCTAGAtt............. 29 tt 1.00 4.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.......................................................................................................................TGGACTAAAGTTTGTTTTG................................................................................................................ 19 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................TTGAATTTGGAAATGCTTTGAAAACTT............................................................................................................................................................................................................ 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................TCTAGACATAGTCAGGACGA. 20 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
..........................TGGAAATGCTTTGAAAACTTGAGATTTCAT.................................................................................................................................................................................................. 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
......................................................................................................................................................................TACATGGATTCCTGAACATGTTTGTATCTTT..................................................... 31 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
..............................................................................................................................................................................................................TATTTCAGGATGGGACTCACACATCTAGAC.............. 30 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................GACTCACACATCTAGACATAGTCAGGACGA. 30 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................TCTTTCAGTATGCATATTTCAGGATGGGACTC.......................... 32 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
..........................TGGAAATGCTTTGAAAACTTGAGATTTCATA................................................................................................................................................................................................. 31 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................TTGAGTTGGAATGACAGGCTTCAGGTTTC...................................................................................... 29 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................TTTCAGGATGGGACTCACACATCTAGACA............. 29 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................TAAAGTTTGTTTTGAGTTGGAATGACAGG................................................................................................. 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
...............................................................................................................................................................................................................ATTTCAGGATGGGACTCACACATCTAGA............... 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
....................................................................................................................................................................................................................................ATCTAGACATAGTCAGGACGAA 22 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...................................................................................................................................TGTTTTGAGTTGGAATGACAGGCTTCAG........................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
..................................................................................................................................................................................TGAACATGTTTGTATCTTTCAGTATGCA............................................ 28 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................CAACTAATGACTTTGGACTAAAGTTT...................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
......................................................................................................................................TTTGAGTTGGAATGACAGGCTTCAGGTTT....................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
......................................................................................................................................................................................................................GATGGGACTCACACATCTAGACATAGTCAGt..... 31 t 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -

Antisense strand
CTGATGCATTTTTCTCAGCTTGAATTTGGAAATGCTTTGAAAACTTGAGATTTCATAAAAGTGTTGGTATTATACTACAGTGGCTATTCTACCATTTCTAATTAGGCAACTAATGACTTTGGACTAAAGTTTGTTTTGAGTTGGAATGACAGGCTTCAGGTTTCTCTACATGGATTCCTGAACATGTTTGTATCTTTCAGTATGCATATTTCAGGATGGGACTCACACATCTAGACATAGTCAGGACGAA
..............................................................................((..(((......(((......(((((....))))).....)))....(((((((((............)))))))))..)))..)).....................................................................................
......................................................................71..............................................................................................167.................................................................................
Size Perfect hit Total Norm Perfect Norm SRR363963(GSM822765)
AdultGlobal 5'-RACEread_length: 105. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR363960(GSM822762)
Adult Library#1Small RNA Miwi IPDuplexed run:. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR037902(GSM510438)
testes_rep3. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
SRR363958(GSM822760)
Adult-WTSmall RNA Miwi IP. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
mjTestesWT2()
Testes Data. (testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
.......TTCTCAGCTTGAATgcct................................................................................................................................................................................................................................. 18 gcct 1.00 0.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
...............................................................................CTATTCTACCATTTtcca......................................................................................................................................................... 18 tcca 1.00 0.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -