| Gene: Sned1 | ID: uc007cdm.1_intron_3_0_chr1_95156385_f.3p | SPECIES: mm9 |
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(5) OTHER.mut |
(2) PIWI.ip |
(14) TESTES |
| TGACAAGAGTATCTGCCAGGCAAACTGGGCTCCAACTCAAAGACCCAGAACGTGAGCACGAAGATGCACCGTCACCAATGTCTTGGTCGCTAAGCTGACCTTTTGATGGAGAGAAGGGAGATGCAGCCATTGCAGGTGGCTCTCTTGCCCACCTCCTAGATTCAGTGGCATGAGGCTTGGGCTCCTTCCTGTGTCCACAGCCTCTGTGTGCCTGGTCCTGCGTCCATGCCTCAATGGTGGCAAGTGCATT |
Size | Perfect hit | Total Norm | Perfect Norm | GSM475280(GSM475280) Mili-IP. (mili testes) | GSM475281(GSM475281) total RNA. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | SRR029040(GSM433292) 6w_hetero_tdrd6-KO. (tdrd6 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR037902(GSM510438) testes_rep3. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................................TGCAGCCATTGCAGGTGG............................................................................................................... | 18 | 2 | 16.00 | 16.00 | 10.50 | 3.50 | - | - | - | 1.50 | - | 0.50 | - | - | - | - | - | - |
| .........................................................................................................................TGCAGCCATTGCAGGTGGCTggt.......................................................................................................... | 23 | ggt | 6.50 | 2.50 | 1.00 | 3.00 | 1.00 | 0.50 | 1.00 | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................TGCAGCCATTGCAGGTGGCTgggt......................................................................................................... | 24 | gggt | 4.00 | 2.50 | 1.00 | 1.00 | 0.50 | - | 1.00 | - | - | - | - | - | 0.50 | - | - | - |
| .........................................................................................................................TGCAGCCATTGCAGGTGGCTgga.......................................................................................................... | 23 | gga | 3.00 | 2.50 | 0.50 | 2.50 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................TGCAGCCATTGCAGGTGGCT............................................................................................................. | 20 | 2 | 2.50 | 2.50 | 1.00 | 0.50 | - | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................TGCAGCCATTGCAGGTGGCTggga......................................................................................................... | 24 | ggga | 2.50 | 2.50 | - | 0.50 | 0.50 | 1.00 | - | - | - | - | - | - | - | - | - | 0.50 |
| .........................................................................................................................TGCAGCCATTGCAGGTGGCTggtt......................................................................................................... | 24 | ggtt | 1.50 | 2.50 | - | 1.00 | - | - | - | 0.50 | - | - | - | - | - | - | - | - |
| ........................................................................................................................ATGCAGCCATTGCAagtg................................................................................................................ | 18 | agtg | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................TGCAGCCATTGCAGGTGGCTga........................................................................................................... | 22 | ga | 1.00 | 2.50 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................TGCAGCCATTGCAGGTGGa.............................................................................................................. | 19 | a | 1.00 | 16.00 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................ATGCAGCCATTGCAGGTGGCTggt.......................................................................................................... | 24 | ggt | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................CAGCCATTGCAGGTGGCTgggt......................................................................................................... | 22 | gggt | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................ATGCAGCCATTGCAGGTGGCTgtt.......................................................................................................... | 24 | gtt | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................ATGCAGCCATTGCAGGTG................................................................................................................ | 18 | 2 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................ATGCAGCCATTGCAGGTGGCTgga.......................................................................................................... | 24 | gga | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................CCTCTGTGTGCCTGGcct................................ | 18 | cct | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .........................................................................................................................TGCAGCCATTGCAGGTGGCTtt........................................................................................................... | 22 | tt | 0.50 | 2.50 | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - |
| .........................................................................................................................TGCAGCCATTGCAGGTGGCTggat......................................................................................................... | 24 | ggat | 0.50 | 2.50 | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................TGCAGCCATTGCAGGTGGCTat........................................................................................................... | 22 | at | 0.50 | 2.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................TGCAGCCATTGCAGGTGGCTa............................................................................................................ | 21 | a | 0.50 | 2.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................TGCAGCCATTGCAGGTGGCa............................................................................................................. | 20 | a | 0.50 | 0.50 | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................TGCAGCCATTGCAGGTG................................................................................................................ | 17 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - |
| ........................................................................................................................ATGCAGCCATTGCAGGTGGC.............................................................................................................. | 20 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - |
| .........................................................................................................................TGCAGCCATTGCAGGTGGCTggaa......................................................................................................... | 24 | ggaa | 0.50 | 2.50 | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................TGCAGCCATTGCAGGTGGC.............................................................................................................. | 19 | 2 | 0.50 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................TGCAGCCATTGCAGG.................................................................................................................. | 15 | 16 | 0.06 | 0.06 | - | - | - | - | - | - | - | 0.06 | - | - | - | - | - | - |
| TGACAAGAGTATCTGCCAGGCAAACTGGGCTCCAACTCAAAGACCCAGAACGTGAGCACGAAGATGCACCGTCACCAATGTCTTGGTCGCTAAGCTGACCTTTTGATGGAGAGAAGGGAGATGCAGCCATTGCAGGTGGCTCTCTTGCCCACCTCCTAGATTCAGTGGCATGAGGCTTGGGCTCCTTCCTGTGTCCACAGCCTCTGTGTGCCTGGTCCTGCGTCCATGCCTCAATGGTGGCAAGTGCATT |
Size | Perfect hit | Total Norm | Perfect Norm | GSM475280(GSM475280) Mili-IP. (mili testes) | GSM475281(GSM475281) total RNA. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | SRR029040(GSM433292) 6w_hetero_tdrd6-KO. (tdrd6 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR037902(GSM510438) testes_rep3. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................................GCCATTGCAGGTGGgatt............................................................................................................... | 18 | gatt | 2.00 | 0.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - |
| ......................................GACCCAGAACGTggg..................................................................................................................................................................................................... | 15 | ggg | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ................................................................................................................................................................................................................TGCCTGGTCCTGCGTCCATGCCTCAA................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |