(4)
OTHER.mut
(6)
PIWI.ip
(2)
PIWI.mut
(1)
TDRD1.ip
(29)
TESTES

Sense strand
TGTGCAGGACCTCTCTAGTCCCCCATGCTCTGTAGAGCTGCCCCCCAGCAACCTTGCCCTCCGTGGCCCTCTGCAGGACCCCAGCCTGCCAGATAGCCCCCTACCATGTCCTGTATGTAGACAAGAGTTTGTCCAACCCCAGGCCTTGAAGAGCCACTTCAAGATTCACCGGGTCACTCCCAACATGTTCTCCTGCCCAGAGTCTGGCTGTGTGTTCTCTGCTGAAGATCGCAAGGGTCTGCAGAATCAC
..................................................................................................(((........((((......(((((....)))))......)))).(((((((.....))))))).......))).............................................................................
................................................................................................97..............................................................................177.......................................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR037903(GSM510439)
testes_rep4. (testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR037902(GSM510438)
testes_rep3. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
............................................................................................................................................................................................................TGGCTGTGTGTTCTCTGCTGAAGATCG................... 27 1 9.00 9.00 3.00 4.00 - - 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGTTCTCTGCTGAAGATCGCAAGGGTC........... 27 1 8.00 8.00 3.00 2.00 - - - - - 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................TGAAGAGCCACTTCAAGATTCACCGGG............................................................................. 27 1 7.00 7.00 3.00 2.00 - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................TGAAGATCGCAAGGGTCTGCAGAATC.. 26 1 6.00 6.00 1.00 - - - - - - 1.00 2.00 - - - - 1.00 1.00 - - - - - - - - - - - - - -
............................................................................................................................................................................................................TGGCTGTGTGTTCTCTGCTGAAGATCGC.................. 28 1 4.00 4.00 - 1.00 - - - 2.00 - - - - - - - - - - - - - - - - - - 1.00 - - - -
..............................................................................................................................................................................................................GCTGTGTGTTCTCTGCTGAAGATCGCA................. 27 1 4.00 4.00 1.00 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TCTCTGCTGAAGATCGCAAGGGTCTGt........ 27 t 2.00 0.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................CTGGCTGTGTGTTCTCTGCTGAAGATCG................... 28 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................TGTGTTCTCTGCTGAAGATCGCAAGGGTt........... 29 t 2.00 1.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................TACCATGTCCTGTATGTAGACAAGAGT.......................................................................................................................... 27 1 2.00 2.00 - - - - - - - - - - 1.00 - - - 1.00 - - - - - - - - - - - - - -
............................................................................................................................................................................................................TGGCTGTGTGTTCTCTGCTGAAGATCGCt................. 29 t 2.00 4.00 - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................TGTGTTCTCTGCTGAAGATCGCAAGG.............. 26 1 2.00 2.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................TGAAGAGCCACTTCAAGATTCACCGGGT............................................................................ 28 1 2.00 2.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................TGTGTGTTCTCTGCTGAAGATCGCAAGG.............. 28 1 2.00 2.00 - - 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................GCTGTGTGTTCTCTGCTGAAG....................... 21 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
................................................................................................................................................................................................................TGTGTGTTCTCTGCTGAAGATCGCAAGt.............. 28 t 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................CTGAAGATCGCAAGGGTCTGCAG...... 23 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.........................................................................................................................................................................................TGTTCTCCTGCCCAGAGTCTGGCTGTGT..................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
.................................................................................................................................................TTGAAGAGCCACTTCAAGATTCACCGG.............................................................................. 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................TGCCAGATAGCCCCCTACCATGTCCT.......................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................TGTGTTCTCTGCTGAAGATCGCAAG............... 25 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................GCTGTGTGTTCTCTGCTGAAGATCGCAtt............... 29 tt 1.00 4.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................CTGTGTGTTCTCTGCTGAAGATCG................... 24 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................TGTGTGTTCTCTGCTGAAGATCGCAAa............... 27 a 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................TGCCCAGAGTCTGGCTGTGTGTTCTCa.............................. 27 a 1.00 0.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
...............................................................................................................................................................................................................CTGTGTGTTCTCTGCTGAAGATC.................... 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
...................................................................................................................................................................................................................GTGTTCTCTGCTGAAGATCGCAAGG.............. 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................TCCTGTATGTAGACAAGAGTTTGTCCA................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
...............................................................................................................................................................................................................CTGTGTGTTCTCTGCTGAAGATCGCAA................ 27 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
....................................................................................................................................................AAGAGCCACTTCAAGATTCACCGGGT............................................................................ 26 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...........................CTCTGTAGAGCTGCCCCCCAGCAACC..................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
..............................................................................................................................................................................................................GCTGTGTGTTCTCTGCTGAAGA...................... 22 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
..........................................................................................................................................................................................................TCTGGCTGTGTGTTCTCTGCTGAAGATC.................... 28 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................TCCCAACATGTTCTCCTGCCCAGAGT............................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
..............................................................................................................................................................................................................GCTGTGTGTTCTCTGCTGAAGATCGCAAG............... 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................TACCATGTCCTGTATGTAGACAAGAGTT......................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................TTCTCTGCTGAAGATCGCAAGGGTCTGC........ 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
......................................................................................................................................................................................ACATGTTCTCCTGCCCAGAGTCTGGCTGT....................................... 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................CTGTGTGTTCTCTGCTGAAGATCGCA................. 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................TGTGTTCTCTGCTGAAGATCGCAAGGGT............ 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................TGGCTGTGTGTTCTCTGCTGAAGATC.................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
.........................................................................................................................................................................................TGTTCTCCTGCCCAGAGTCTGGCTGT....................................... 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................TGTGTTCTCTGCTGAAGATCGCAA................ 24 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................TTGAAGAGCCACTTCAAGATTCACCGGGT............................................................................ 29 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................TTCAAGATTCACCGGGTCACTCCCAAC.................................................................. 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................AGAGCCACTTCAAGATTCACCGGGTCA.......................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................TTCTCTGCTGAAGATCGCAAGGGTCTGCAGt..... 31 t 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................TGGCTGTGTGTTCTCTGCTGAAGATCt................... 27 t 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................GAGCCACTTCAAGATTCACCGGGTCACTC....................................................................... 29 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................TGTGTGTTCTCTGCTGAAGATCGCAAG............... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................AGATTCACCGGGTCACTCCCAACATGTT............................................................. 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
...............................................................................................................................TTTGTCCAACCCCAGGCCTTGAAGAG................................................................................................. 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGTTCTCTGCTGAAGATCGCAAGttt............ 26 ttt 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................GCTGTGTGTTCTCTGCTGAAGATCGC.................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................GTGTGTTCTCTGCTGAAGATCGCAAGGt............. 28 t 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................AGAGTTTGTCCAACCCCAGGCCTTGAAG................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................GCTGTGTGTTCTCTGCTGAAGATCGaaa................ 28 aaa 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...GCAGGACCTCTCTAGTCCCCCATGCTC............................................................................................................................................................................................................................ 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................TGCTGAAGATCGCAAGGGTCTGCAGAA.... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
..............................................................................................................................................................................................................GCTGTGTGTTCTCTGCTGAAGATaa................... 25 aa 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................TCTGGCTGTGTGTTCTCTGCTGAAGA...................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................TGTCCTGTATGTAGACAAGAGTTTGTCCA................................................................................................................... 29 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
......................................................TGCCCTCCGTGGCCCTCTGCAGGACCCC........................................................................................................................................................................ 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................TGGCTGTGTGTTCTCTGCTGAAGA...................... 24 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................GCTGTGTGTTCTCTGCTGAAGATCGCAA................ 28 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................TGTCCTGTATGTAGA................................................................................................................................. 15 14 0.07 0.07 - - - - - - - - - - - - - - - - - 0.07 - - - - - - - - - - -

Antisense strand
TGTGCAGGACCTCTCTAGTCCCCCATGCTCTGTAGAGCTGCCCCCCAGCAACCTTGCCCTCCGTGGCCCTCTGCAGGACCCCAGCCTGCCAGATAGCCCCCTACCATGTCCTGTATGTAGACAAGAGTTTGTCCAACCCCAGGCCTTGAAGAGCCACTTCAAGATTCACCGGGTCACTCCCAACATGTTCTCCTGCCCAGAGTCTGGCTGTGTGTTCTCTGCTGAAGATCGCAAGGGTCTGCAGAATCAC
..................................................................................................(((........((((......(((((....)))))......)))).(((((((.....))))))).......))).............................................................................
................................................................................................97..............................................................................177.......................................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR037903(GSM510439)
testes_rep4. (testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR037902(GSM510438)
testes_rep3. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
...............................................................................................................................................GAAGAGCCACTTCAAcggc........................................................................................ 19 cggc 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -