| Gene: Ccnyl1 | ID: uc007bgx.1_intron_3_0_chr1_64755053_f.5p | SPECIES: mm9 |
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(2) OTHER.mut |
(1) PIWI.ip |
(10) TESTES |
| CTAGATGACAGCACAGTCAGCCAGCCTAACCTTAGAACCACAATAAAATGGTGAGTACAACTAGGCTGCCAGCGCTGAGCAACAGACCCCTCTGCTAGAGCACCCGAGCCATGCCTGGTCGTTTCAGTCGTTTGATTGTCATGTTAAGACAAAGTTTAAGACATTGGGGTCAATTAGATACTGATTTTTAAGGGACTAAGTGTAAAATTTCAGTTTCCATTTTATCTTAGACTGCATGGTGGAAAGGAGA ......................................................................................................(((..((((....))))....(((((.((((((((((((((((.((((...))))..)))))...)).)))))))))))))).......)))........................................................ ....................................................................................................101................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | mjTestesWT2() Testes Data. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................GTGAGTACAACTAGGCTGCCAGCGCTGAGCAACAGACCCCTCTGCTAGAGCA.................................................................................................................................................... | 52 | 1 | 33.00 | 33.00 | 33.00 | - | - | - | - | - | - | - | - | - |
| .TAGATGACAGCACAGTCAGCCAGCCTA.............................................................................................................................................................................................................................. | 27 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - |
| ............................ACCTTAGAACCACAATAAAATGaga..................................................................................................................................................................................................... | 25 | aga | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - |
| .TAGATGACAGCACAGTCAGCCAGCCT............................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - |
| .......ACAGCACAGTCAGCCAGCCTAACCTTA........................................................................................................................................................................................................................ | 27 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | 0.50 | - | - |
| CTAGATGACAGCACAGTCAGCCAGCCTAACCTTAGAACCACAATAAAATGGTGAGTACAACTAGGCTGCCAGCGCTGAGCAACAGACCCCTCTGCTAGAGCACCCGAGCCATGCCTGGTCGTTTCAGTCGTTTGATTGTCATGTTAAGACAAAGTTTAAGACATTGGGGTCAATTAGATACTGATTTTTAAGGGACTAAGTGTAAAATTTCAGTTTCCATTTTATCTTAGACTGCATGGTGGAAAGGAGA ......................................................................................................(((..((((....))))....(((((.((((((((((((((((.((((...))))..)))))...)).)))))))))))))).......)))........................................................ ....................................................................................................101................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | mjTestesWT2() Testes Data. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............CAGCCAGCCTAACCTTAGAACCACAta................................................................................................................................................................................................................ | 27 | ta | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - |
| .................CAGCCAGCCTAACCTTAGAACCACAA............................................................................................................................................................................................................... | 26 | 2 | 0.50 | 0.50 | - | - | - | - | 0.50 | - | - | - | - | - |
| ......GACAGCACAGTCAGCCAGCCTAACCTTA........................................................................................................................................................................................................................ | 28 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | 0.50 | - | - | - |
| .......................GCCTAACCTTAGAACCACAA............................................................................................................................................................................................................... | 20 | 2 | 0.50 | 0.50 | - | - | - | - | - | 0.50 | - | - | - | - |
| ..................AGCCAGCCTAACCTTAGAACCACA................................................................................................................................................................................................................ | 24 | 2 | 0.50 | 0.50 | - | - | 0.50 | - | - | - | - | - | - | - |
| ..............AGTCAGCCAGCCTAACCTTAGAACCACA................................................................................................................................................................................................................ | 28 | 2 | 0.50 | 0.50 | - | - | 0.50 | - | - | - | - | - | - | - |
| ......GACAGCACAGTCAGCC.................................................................................................................................................................................................................................... | 16 | 14 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | 0.07 | 0.07 |