ID: uc007izf.1_intron_6_0_chr11_55079562_r.3p
GENE: Fat2(6)
chr11:55079512-55079761-


(2)
AGO2.ip 		(3)
B-CELL 		(16)
BRAIN 		(1)
DGCR8.mut 		(2)
EMBRYO 		(5)
ESC 		(1)
HEART 		(4)
LIVER 		(9)
OTHER 		(2)
OTHER.mut 		(1)
PANCREAS 		(1)
PIWI.ip 		(4)
SPLEEN 		(5)
TESTES 		(2)
THYMUS

Sense strand
CCTTTGGTGAAAGACCCCTTCTAAGACCCAGTACTGCACTCAGGGACACTGAGGGAAGAGTACCAGGCCAGCTTTCAGCCTGGGCCCTGTCTGTGGGCAGAGGGATAAGCACTGGTCCCTAGAAGATGGGACTACAAAGGAGGGACTGACGGGGCTGGGGCTTACACCACTCTCTGGCTTACTGTTGTTCTTCATCACAGGAGAACTCCCCCATTGGCATCAAAGTCCTGCAGCTGATCCTGGATGACCC
..................................................................................(((((((((.((..((..........))..(((((((........)))))))..........)).)))))))))..............................................................................................
................................................................................81...............................................................................162......................................................................................
SizePerfect hitTotal NormPerfect NormSRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR073955(GSM629281)
total RNA. (blood)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR059765(GSM562827)
DN3_control. (thymus)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR059774(GSM562836)
MEF_control. (MEF)		SRR073954(GSM629280)
total RNA. (blood)		SRR553584(SRX182790)
source: Heart. (Heart)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)
...........................................................................................................................................GAGGGACTGACGGGGGCAT............................................................................................191111.0031.0015.002.0011.0032.008.0015.00-6.008.002.00-----2.00--1.00-2.00-------1.001.00--------1.00-1.001.00-----1.00---1.00
...........................................................................................................................................GAGGGACTGACGGGGGCA.............................................................................................18197.0031.0023.0014.0017.005.0015.009.00-5.002.00----1.00-1.00--1.00----2.001.00----------1.00----------------
...........................................................................................................................................GAGGGACTGACGGGGGC..............................................................................................17164.0031.003.0010.005.00-3.006.0023.001.003.003.00---3.00---2.00-2.00--------------------------------
...........................................................................................................................................GAGGGACTGACGGGGG...............................................................................................16144.0031.005.0017.003.002.003.002.006.002.00-2.00---------------1.00--------------------1.00-----
...........................................................................................................................................GAGGGACTGACGGGG................................................................................................15131.0031.008.001.004.001.002.005.00---1.006.00-----1.00-------1.001.00--------------------------
...........................................................................................................................................GAGGGACTGACGGGGGCAC............................................................................................19110.0031.00-2.002.002.004.00-----------------------------------------------
...........................................................................................................................................GAGGGACTGACGGGGGCAG............................................................................................1918.0031.00-1.004.003.00------------------------------------------------
............................................................................................................................................AGGGACTGACGGGGCC..............................................................................................165.000.00-3.001.00----1.00--------------------------------------------
...........................................................................................................................................GAGGGACTGACGGGGAA..............................................................................................1715.0031.005.00---------------------------------------------------
............................................................................................................................................AGGGACTGACGGGGCCA.............................................................................................173.000.00-1.002.00-------------------------------------------------
...........................................................................................................................................GAGGGACTGACGGGGGGAT............................................................................................1913.0031.002.001.00--------------------------------------------------
...........................................................................................................................................GAGGGACTGACGGGGGCG.............................................................................................1813.0031.001.00---2.00-----------------------------------------------
...........................................................................................................................................GAGGGACTGACGGGGCCAT............................................................................................1913.001.00---2.00---1.00--------------------------------------------
...........................................................................................................................................GAGGGACTGACGGGGGAAT............................................................................................1913.0031.00---1.001.00-------------------------1.00---------------------
.........................................................................................................................................AGGAGGGACTGACGGG.................................................................................................1612.002.00----------------2.00-----------------------------------
...........................................................................................................................................GAGGGACTGACGGGGGCAA............................................................................................1912.0031.00----2.00-----------------------------------------------
............................................................................................................................................AGGGACTGACGGGGCAT.............................................................................................172.000.00-----2.00----------------------------------------------
...........................................................................................................................................GAGGGACTGACGGGGGTAT............................................................................................1912.0031.001.00--1.00------------------------------------------------
..............................................................................................................................................GGACTGACGGGGCTGTTC..........................................................................................181.000.00-------1.00--------------------------------------------
...........................................................................................................................................GAGGGACTGACGGGGGGA.............................................................................................1811.0031.00----1.00-----------------------------------------------
...........................................................................................................................................GAGGGACTGACGGGGTCA.............................................................................................1811.0031.00----1.00-----------------------------------------------
.....................................................................................................................CCTAGAAGATGGGACCAGC..................................................................................................................191.000.00-------------------------------------------------1.00--
...............................................................................................................................................................................................................CCCCCATTGGCATCAACA.........................181.000.00---------------------------------------------1.00------
....................................................................................................................................................................................................................................TGCAGCTGATCCTGGGTAT...191.000.00-1.00--------------------------------------------------
............................................................................................................................................AGGGACTGACGGGGCCCT............................................................................................181.000.00--1.00-------------------------------------------------
.........................................AGGGACACTGAGGGAATT...............................................................................................................................................................................................181.000.00------------------------------------------1.00---------
...........................................................................................................................................GAGGGACTGACGGGGGCGT............................................................................................1911.0031.00-1.00--------------------------------------------------
............................................................................................................................................AGGGACTGACGGGGCAA.............................................................................................171.000.00-----1.00----------------------------------------------
...........................................................................................................................................GAGGGACTGACGGGGC...............................................................................................1611.001.00----1.00-----------------------------------------------
...........................................................................................................................................GAGGGACTGACGGGGACCG............................................................................................1911.0031.00---1.00------------------------------------------------
...........................................................................................................................................GAGGGACTGACGGGGGGCA............................................................................................1911.0031.00-------1.00--------------------------------------------
...........................................................................................................................................GAGGGACTGACGGGGCCTTT...........................................................................................2011.001.00--1.00-------------------------------------------------
...........................................................................................................................................GAGGGACTGACGGGGGAGT............................................................................................1911.0031.001.00---------------------------------------------------
...........................................................................................................................................GAGGGACTGACGGGGCCTT............................................................................................1911.001.00---1.00------------------------------------------------
.....................................................................................CCTGTCTGTGGGCAGGG....................................................................................................................................................171.000.00-1.00--------------------------------------------------
.................................................................................................................................................................................CTTACTGTTGTTCTTCATCACAA..................................................231.000.00---------------------------------1.00------------------
...........................................................................................................................................GAGGGACTGACGGGGCCA.............................................................................................1811.001.00--1.00-------------------------------------------------
............................................................................................................................................AGGGACTGACGGGGCA..............................................................................................161.000.00----1.00-----------------------------------------------
...........................................................................................................................................GAGGGACTGACGGGGGGC.............................................................................................1811.0031.001.00---------------------------------------------------
...........................................................................................................................................GAGGGACTGACGGGGCA..............................................................................................1711.001.001.00---------------------------------------------------
...........................................................................................................................................GAGGGACTGACGGGGTCAT............................................................................................1911.0031.00---1.00------------------------------------------------
...........................................................................................................................................GAGGGACTGACGGGGTG..............................................................................................1711.0031.001.00---------------------------------------------------
.........................................................................................................................................................................CTCTCTGGCTTACTGTTGTTCTTCATCACAG..................................................3111.001.00--------------------------------------------------1.00-
............................................................................................................................................AGGGACTGACGGGGCCAG............................................................................................181.000.00--1.00-------------------------------------------------
..............................................................................................................................................................................TGGCTTACTGTTGTTCTTCATCA.....................................................2311.001.00----------1.00-----------------------------------------
...........................................................................................................................................GAGGGACTGACGGGGGCC.............................................................................................1811.0031.00-----1.00----------------------------------------------
...........................................................................................................................................GAGGGACTGACGGGGGCGC............................................................................................1911.0031.00---1.00------------------------------------------------
............................................................................................................................................AGGGACTGACGGGGCCGT............................................................................................181.000.00--1.00-------------------------------------------------

Antisense strand
CCTTTGGTGAAAGACCCCTTCTAAGACCCAGTACTGCACTCAGGGACACTGAGGGAAGAGTACCAGGCCAGCTTTCAGCCTGGGCCCTGTCTGTGGGCAGAGGGATAAGCACTGGTCCCTAGAAGATGGGACTACAAAGGAGGGACTGACGGGGCTGGGGCTTACACCACTCTCTGGCTTACTGTTGTTCTTCATCACAGGAGAACTCCCCCATTGGCATCAAAGTCCTGCAGCTGATCCTGGATGACCC
..................................................................................(((((((((.((..((..........))..(((((((........)))))))..........)).)))))))))..............................................................................................
................................................................................81...............................................................................162......................................................................................
SizePerfect hitTotal NormPerfect NormSRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR073955(GSM629281)
total RNA. (blood)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR059765(GSM562827)
DN3_control. (thymus)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR059774(GSM562836)
MEF_control. (MEF)		SRR073954(GSM629280)
total RNA. (blood)		SRR553584(SRX182790)
source: Heart. (Heart)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)
.............................................................................................................................................GGGACTGACGGGGCTGCCA.......................................................................................... 1915.000.00-----------3.001.00-2.00------1.002.00---1.00-------1.00--1.00-----1.001.00---1.00---
.............................................................................................................................................GGGACTGACGGGGCTGCC........................................................................................... 188.000.00-----------2.003.00-1.00-----------1.00----1.00--------------------
..........................................................................................................................................GGAGGGACTGACGGGGCA.............................................................................................. 181.000.00--------------------------------1.00-------------------
.............................................................................................................................................GGGACTGACGGGGCTCCCA.......................................................................................... 191.000.00---------------------------1.00------------------------
....................................................................................................................................................................................ACTGTTGTTCTTCATCTTTT.................................................. 201.000.00------------------------------------1.00---------------
.............................................................................................................................................GGGACTGACGGGGCTGCCC.......................................................................................... 191.000.00-----------1.00----------------------------------------
..............................................................................................................................................................................................................................AAGTCCTGCAGCTGAAGGG......... 191.000.00---------------------------------------1.00------------
...........................................................................................................................................................................................................................GGATCAGCTGCAGGACTTTGA.......... 2111.001.00---------------------1.00------------------------------
..........................................................................................................................................GGAGGGACTGACGGGGCTA............................................................................................. 191.000.00-----------1.00----------------------------------------