ID: uc009rty.10
GENE: Ptpn23(14)
chr9:110292643-110293023-


(2)
AGO1.ip 		(10)
AGO2.ip 		(1)
AGO3.ip 		(4)
B-CELL 		(23)
BRAIN 		(3)
CELL-LINE 		(3)
DCR.mut 		(2)
DGCR8.mut 		(13)
EMBRYO 		(9)
ESC 		(5)
FIBROBLAST 		(2)
HEART 		(1)
KIDNEY 		(1)
LIVER 		(1)
LUNG 		(12)
OTHER 		(7)
OTHER.mut 		(3)
PIWI.ip 		(1)
PIWI.mut 		(3)
SKIN 		(3)
SPLEEN 		(21)
TESTES 		(2)
THYMUS 		(5)
TOTAL-RNA 		(2)
UTERUS

Sense strand
CTGCTTCGGGAGATGCTGGCCAAAATTGAAGATAAGAATGAGGTCCTAGAGTAAGTGGGGGACAAATGGTGGGGGGTGTGTATACACCAGGTTTCCCGCCTCCCTGACCAGAGTCTAGATCTAGACTGTAGGTGTTAATGTGCTTGTACCAGTGCTTGGGCATAGCTACTAGGCCATGTAGTATTAGAGAGGTAAAGGTGACAATTTTCTCTCTGCTAAGTCTTCAGTCTAGTTCCAGTGGAGGGGATGGACCAAGCAGGCTCTCTATGTGGAAGGAACTGGGCCAGCCCAGCATCCACCCGATCCTGTGTCATCCCTCTTCCTTCCCTAGTCAGTTCATGGACTCCATGCAGCTGGACCCTGAGACAGTGGACAACTTGG
..............................................................................................................................................................................................................................................................................((((((((..(((...((.(((.(((.....))).))).))...)))..))))))))......................................................
........................................................................................................................................................................................................................................................................265...............................................................331................................................
SizePerfect hitTotal NormPerfect NormSRR390298(GSM849856)
cell line: NIH-3T3cell type: fibroblastinfect. (fibroblast)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		mjLiverKO2()
Liver Data. (Zcchc11 liver)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesWT4()
Testes Data. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		mjTestesWT3()
Testes Data. (testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR206940(GSM723281)
other. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR206942(GSM723283)
other. (brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		GSM317183(GSM317183)
Ago-1 IP small RNAs from mouse brain. (ago1 brain)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR014236(GSM319960)
10 dpp total. (testes)		RuiDcrWT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR037923(GSM510461)
e9p5_rep1. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR037907(GSM510443)
brain_rep4. (brain)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR306536(GSM750579)
19-24nt. (ago2 brain)
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGCCCA..........................................................................................22190.0090.0083.00--2.00------------1.002.00-------------1.00-----------------------------------------------------------1.00------------------
......................................................................................................................................................................................................................................................................................................................TCATCCCTCTTCCTTCCCTAGT.................................................22123.0023.00-3.00-------1.00--1.00-1.00------3.00--------2.00---3.00-----------------2.00-----1.00---1.00---1.00--------------------1.00-1.00--1.00-1.00---------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGC.............................................................................................21120.0020.00-4.0011.00----------3.00---------------1.00-1.00------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGT.............................................................................................2112.000.00-----1.00----7.00----3.00-------------1.00--------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCC...........................................................................................2319.009.00-----3.00-1.00------2.00----1.00--------------------------1.00--1.00------------------------------------------------------------
................................TAAGAATGAGGTCCTAGA...........................................................................................................................................................................................................................................................................................................................................1818.008.00------7.00------------1.00------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................GTCATCCCTCTTCCTTCCCTAG..................................................2217.007.00-1.00----------------1.00------1.00-------2.00---1.00--------------------------------------------------1.00---------------------
....................................................................................................................................................................................................................................................................................................................TGTCATCCCTCTTCCTTCCCTAG..................................................2317.007.00-1.00-------1.00----1.00---1.00------1.00--1.00----1.00----------------------------------------------------------------------------
.................................AAGAATGAGGTCCTAGATC.........................................................................................................................................................................................................................................................................................................................................1915.004.00----3.00--1.00---------1.00--------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................GTTCATGGACTCCATGCAGCTGGACCC....................2715.005.00---5.00----------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................TGTCATCCCTCTTCCTTCCCTA...................................................2215.005.00------------1.00-----------------------2.00--------------1.00----------------------------1.00-----------------------------
..........................................................................................................................................................................................................................................................................ATGTGGAAGGAACTGGGCCAGCC............................................................................................2315.005.00-----1.00-----4.00--------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCC............................................................................................2215.005.00-----------1.00--1.00-----------2.00---------------------------------1.00-------------------------------------------------
.................................AAGAATGAGGTCCTAGA...........................................................................................................................................................................................................................................................................................................................................1714.004.00------------------------2.00----1.00-----------------1.00--------------------------------------------------------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGCCCAT.........................................................................................2314.0090.00---------1.00----------------1.00--------1.00-------1.00------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCAAT.........................................................................................2513.005.00-------------3.00------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................GTCATCCCTCTTCCTTCCCTA...................................................2113.003.00----------------1.00-----------1.00-----------------------------------------1.00---------------------------------------
..........................................................................................................................................................................................................................................................................ATGTGGAAGGAACTGGGCCAG..............................................................................................2113.003.00-1.00---------------------------------1.00-----------------------------1.00--------------------------------------------
....................................................................................................................................................................................................................................................................................................................TGTCATCCCTCTTCCTTCCCT....................................................2113.003.00------------1.00-----------------1.00--------------------1.00----------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................GTCATCCCTCTTCCTTCCCT....................................................2013.003.00------------2.00------------1.00------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................GTCATCCCTCTTCCTTCCCTAGT.................................................2313.003.00----------------------------------------------------------------------------------1.00--------------------1.00--1.00---
..........................................................................................................................................................................................................................................................................ATGTGGAAGGAACTGGGCCAGT.............................................................................................2213.003.00---------------1.00-----------------------------1.00---1.00------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCCT..........................................................................................2413.009.00------------1.00--------------1.00---------1.00------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................TCATCCCTCTTCCTTCCCTAGA.................................................2212.002.00-1.00------------------------------------------------------------------------------------1.00-----------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCAC..........................................................................................2412.005.00-------------------------------------------1.00---------------------------1.00--------------------------------------
......................AAATTGAAGATAAGAATGAGGTCCTAG............................................................................................................................................................................................................................................................................................................................................2712.002.00--------------------2.00-----------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................GCTGGACCCTGAGACAGTGGAC.......2212.002.00-----------------------------------------------------------------------------------1.00-----------------1.00--------
.............TGCTGGCCAAAATTGAAGATAAGAATG.....................................................................................................................................................................................................................................................................................................................................................2712.002.00--------------------1.00-------------------1.00---------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................TCATCCCTCTTCCTTCCCTAG..................................................2112.002.00-1.00----------------1.00-------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................TGTCATCCCTCTTCCTTCCCTAGA.................................................2412.007.00--------------------------------------------------------1.00------------1.00----------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................GCAGCTGGACCCTGAGACAG............2012.002.00-------2.00------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCCA..........................................................................................2412.002.00-----1.00---------1.00----------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................TCATGGACTCCATGCAGC...........................1812.002.00------------------------------------------------------------------------1.00-----------------------------------1.00-
.....................................................................................................................................................................................................................................................................................................................GTCATCCCTCTTCCTTCCCTATT.................................................2312.003.00-----------------------------------------------------1.00------------------------------1.00-------------------------
.........................TTGAAGATAAGAATGAGGTCC...............................................................................................................................................................................................................................................................................................................................................2112.002.00--------2.00-----------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................ATGTGGAAGGAACTGGGCCAGC.............................................................................................2212.002.00----------------------1.00--------------------------------------------------------1.00------------------------------
..........................................................................................................................................................................................................................................................................ATGTGGAAGGAACTGGGCCAGCCC...........................................................................................2412.002.00-----------1.00-------1.00------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGCCCATT........................................................................................2412.0090.00----------------------------1.00--1.00------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCA...........................................................................................2312.005.00------------------------------------------1.00----------1.00--------------------------------------------------------
.....................AAAATTGAAGATAAGAATGAGGTCCT..............................................................................................................................................................................................................................................................................................................................................2612.002.00----------------------------------------1.00----------------------1.00----------------------------------------------
.........................................................................................................................................................................................................................................................................TATGTGGAAGGAACTGGGCCAGCAT...........................................................................................2511.001.00-----------------------------------------------------------------------------------------------------------1.00--
.....................................................................................................................................................................................................................................................................................................................GTCATCCCTCTTCCTTCCCTAT..................................................2211.003.00--------1.00-----------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCCTTT........................................................................................2611.009.00-----------------1.00--------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGCCCAAATT......................................................................................2611.0090.00---------------------------------------------------------------------------------------------------------1.00----
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCACCCC...........................................................................................231.000.00-----1.00--------------------------------------------------------------------------------------------------------
........................................AGGTCCTAGAGTAAGGC....................................................................................................................................................................................................................................................................................................................................171.000.00-------1.00------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................ATGTGGAAGGAACTGGGCCAGCTT...........................................................................................2411.002.00--------------------------------------1.00-----------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGCC............................................................................................2011.001.00-1.00------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCCAT.........................................................................................2511.002.00---------1.00----------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCTA..........................................................................................2411.005.00-----------------------------------------------------------------------------------------------1.00--------------
..........................................................................................................................................................................AGGCCATGTAGTATTAGAGAGGT............................................................................................................................................................................................2311.001.00-------1.00------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGA.............................................................................................191.000.00----------------------1.00---------------------------------------------------------------------------------------
...........................GAAGATAAGAATGAGGTCCTAGA...........................................................................................................................................................................................................................................................................................................................................2311.001.00--------------------------------------------------1.00-----------------------------------------------------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGCCCAA.........................................................................................2311.0090.00-------1.00------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCAT..........................................................................................2411.005.00------------------------1.00-------------------------------------------------------------------------------------
.............................AGATAAGAATGAGGTCCTAGATT.........................................................................................................................................................................................................................................................................................................................................231.000.00--------1.00-----------------------------------------------------------------------------------------------------
.............TGCTGGCCAAAATTGAAGA.............................................................................................................................................................................................................................................................................................................................................................1911.001.00---------1.00----------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................TGTCATCCCTCTTCCTTCCCTAGTT................................................251.000.00------------------------------------------------------------------------------------------------------1.00-------
.........................................................................................................................................................................................................................................................................TATGTGGAAGGAACTGGGCCCGA.............................................................................................231.000.00-----1.00--------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................ATGGACTCCATGCAGCTGGACCC....................2311.001.00--------------------------------1.00-----------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................GGAAGGAACTGGGCCAGCCCAAT........................................................................................231.000.00----------------1.00---------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................GTCATCCCTCTTCCTTCCCTAGA.................................................2311.007.00--------------------------------1.00-----------------------------------------------------------------------------
......................................................................................................................................................................................................................................................ATGGACCAAGCAGGCTCTCTATGTGGAAGGAACTGGGCCAGCCCAGCATCCACCCGATCCTGTGTCATCCCTCTTCCTTCCCTAG..................................................8511.001.00--------------------------------------------------------------------------------------------------------1.00-----
......................................................................................................................................................................................................................................................................................................................TCATCCCTCTTCCTTCCCTATT.................................................221.000.00----------------------------------------------------------------1.00---------------------------------------------
..GCTTCGGGAGATGCTGGCCAAAA....................................................................................................................................................................................................................................................................................................................................................................2311.001.00---------------------------------------------------------------------------1.00----------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGAAGT..........................................................................................241.000.00-------------------------------------------------------------------------------------1.00------------------------
.....................................................................................................................................................CAGTGCTTGGGCATAGCATGT...................................................................................................................................................................................................................211.000.00----------------------------------------------1.00---------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................GCAGCTGGACCCTGAGACAGT...........2111.001.00-------------------------------------------------------------1.00------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGTTT...........................................................................................231.000.00----------------------------------------------------------------------------------------------------1.00---------
.........................TTGAAGATAAGAATGAGGTCCTAGATC.........................................................................................................................................................................................................................................................................................................................................2711.001.00--------------------------------------------------------------------1.00-----------------------------------------
.........................................................................................................................................................................................................................................................................TATGTGGAAGGAACTGGGCCAGCCCAT.........................................................................................2711.001.00---------------------------1.00----------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGCA............................................................................................201.000.00-----------------------------------1.00--------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGCCCAAGC.......................................................................................2511.0090.00----------------------------------------------------------------------------1.00---------------------------------
......................................................................................................................................................................................................................................................................................................................TCATCCCTCTTCCTTCCCTAAG.................................................221.000.00-----------------------------------------------------------1.00--------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................CATGCAGCTGGACCCTGAGACAGTGGAC.......2811.001.00---------------------------1.00----------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................TATGTGGAAGGAACTGGGCCAGCCCAAA........................................................................................2811.001.00-------------------------------------------------------------------------------------------------1.00------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGCCA...........................................................................................2111.001.001.00-------------------------------------------------------------------------------------------------------------
.........................TTGAAGATAAGAATGAGGTCCTAGA...........................................................................................................................................................................................................................................................................................................................................2511.001.00----1.00---------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................TCATCCCTCTTCCTTCCCTAGTAA...............................................2411.0023.00---------1.00----------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................TGGACTCCATGCAGCTGGACCCTGAGAC..............2811.001.00------------------------------------------------1.00-------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCCAAT........................................................................................2611.002.00------------------------------------------------------------------------------------------------1.00-------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGCCCAAGT.......................................................................................2511.0090.00---------------------------------------------1.00----------------------------------------------------------------
.................................AAGAATGAGGTCCTAGATCAG.......................................................................................................................................................................................................................................................................................................................................2111.004.00-------------------------------------------------------------------------1.00------------------------------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGCCCACT........................................................................................2411.0090.00----1.00---------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCAAT..........................................................................................2411.0020.00-----------------1.00--------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................TGCAGCTGGACCCTGAGACAGTGGACAACT...3011.001.00---------------------------------------1.00----------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................TCATCCCTCTTCCTTCCCTCG..................................................211.000.00------------------1.00-------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCAA..........................................................................................2411.005.00-----------------------------------------1.00--------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGAAAA..........................................................................................241.000.00---------------------------------------------------------------------------------------------------1.00----------
......................................................................................................................................................................................................................................................................................................................................................ACTCCATGCAGCTGGACCC....................1911.001.00----1.00---------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGAT............................................................................................221.000.00-----------------------------------------------------------------------------1.00--------------------------------
.........................TTGAAGATAAGAATGAGG..................................................................................................................................................................................................................................................................................................................................................1811.001.00------------------------------------------------1.00-------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCGTAG.............................................................................................211.000.00--1.00-----------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGCCCAAA........................................................................................2411.0090.00------------------------------------------------------1.00-------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................TGCAGCTGGACCCTGAGACAGTGGAC.......2611.001.00-------------------------------------------------------------------1.00------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................CATGCAGCTGGACCCTGAGA...............2011.001.00--------------------------------------1.00-----------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGAA............................................................................................221.000.00------------------------------------------------------------------------------1.00-------------------------------
..........................................................................................................................................................................................................................................................................ATGTGGAAGGAACTGGGCCAGAA............................................................................................2311.003.00-----------------------------------------1.00--------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAAT.............................................................................................211.000.00------------------------------------------1.00-------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCAAA.........................................................................................2511.005.00---------------------------------------1.00----------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................ATGTGGAAGGAACTGGGCCAGTA............................................................................................2311.003.00-1.00------------------------------------------------------------------------------------------------------------
..GCTTCGGGAGATGCTGGCCAA......................................................................................................................................................................................................................................................................................................................................................................2111.001.00--------1.00-----------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................TGGACTCCATGCAGCTGGACCCTG..................2411.001.00------------------------------------------------------------------------------------------1.00-------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGAAA...........................................................................................231.000.00--------------------------------1.00-----------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGAAT...........................................................................................211.000.00---------------------------------------------------------------------------------------------1.00----------------
....TTCGGGAGATGCTGGCCAAAATTGATA..............................................................................................................................................................................................................................................................................................................................................................271.000.00--------1.00-----------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................ATGGACTCCATGCAGCTGGACCCT...................2411.001.00-------1.00------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................TGAGACAGTGGACAACTT..1811.001.00--------1.00-----------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................TGGACTCCATGCAGCTGGACCC....................2211.001.00--------------------------------------------1.00-----------------------------------------------------------------
.........................................................................................................................................................................................................................................................................TATGTGGAAGGAACTGGGCCAGCCCA..........................................................................................2611.001.00----1.00---------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................ATGTGGAAGGAACTGGGCCAGCAA...........................................................................................2411.002.00--------1.00-----------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCCAA.........................................................................................2511.002.00-------------------1.00------------------------------------------------------------------------------------------
..............................GATAAGAATGAGGTCCTAGA...........................................................................................................................................................................................................................................................................................................................................2011.001.00----------------1.00---------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................TGGACTCCATGCAGCTGGACCCT...................2311.001.00---------------------------------------------------------------------------------1.00----------------------------
.........................................................................................................................................................................................................................................................................TATGTGGAAGGAACTGGGCCAGCC............................................................................................2411.001.00--------------------------------------------1.00-----------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................CCGATCCTGTGTCATCCCTCTTCCT.........................................................2511.001.00-----------------------------------------------1.00--------------------------------------------------------------
..........................................................................................................................................................................................................................................................................ATGTGGAAGGAACTGGGCCAGA.............................................................................................2211.003.00--------------------------------------------------------------------------1.00-----------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGA.............................................................................................211.000.00-------------------------------------------------------1.00------------------------------------------------------
..........................................................................................................................................................................................................................................................................ATGTGGAAGGAACTGGGCCAGCCCAAGT.......................................................................................281.000.00-----1.00--------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCA............................................................................................2211.0020.00----1.00---------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................TGTCATCCCTCTTCCTTCCCTAT..................................................2311.005.00------------------1.00-------------------------------------------------------------------------------------------
................TGGCCAAAATTGAAGATAAGAATGAGG..................................................................................................................................................................................................................................................................................................................................................2711.001.00---------------------------------------------------------1.00----------------------------------------------------
.....TCGGGAGATGCTGGCCAAAATT..................................................................................................................................................................................................................................................................................................................................................................2211.001.00--------------------------------------------------1.00-----------------------------------------------------------
.........................................................................................................................................................................................................................................................................TATGTGGAAGGAACTGGGCCAGC.............................................................................................2311.001.00----------------------1.00---------------------------------------------------------------------------------------
..........................TGAAGATAAGAATGAGGTCCTAGATC.........................................................................................................................................................................................................................................................................................................................................261.000.00--------------------------------------------------------------------------------------------------1.00-----------
..........................................................................................................................................................................................................................................................................ATGTGGAAGGAACTGGGCCAGCCAA..........................................................................................2511.005.00---------1.00----------------------------------------------------------------------------------------------------
....TTCGGGAGATGCTGGATCA......................................................................................................................................................................................................................................................................................................................................................................191.000.00----------------1.00---------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGCCCAAT........................................................................................2411.0090.00----1.00---------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................AGACAGTGGACAACTT..1630.670.67------0.67-------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................TGTCATCCCTCTTCCTTCCCC....................................................2120.500.50-------------------------------------------------------0.50------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................TGTCATCCCTCTTCCTTCCC.....................................................2020.500.50-------------------------------------------------------------------------------------------------------------0.50
....................................................................................................................................................................................................................................................................................................................TGTCATCCCTCTTCCTTCCCAA...................................................2220.500.50-------------------0.50------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................TGTCATCCCTCTTCCTTCCCGT...................................................2220.500.50---------------------0.50----------------------------------------------------------------------------------------
..................................AGAATGAGGTCCTAGA...........................................................................................................................................................................................................................................................................................................................................1630.330.33--------------------------------------------------------0.33-----------------------------------------------------
...................................GAATGAGGTCCTAGA...........................................................................................................................................................................................................................................................................................................................................1540.250.25----------------------0.25---------------------------------------------------------------------------------------
...................................GAATGAGGTCCTAGATC.........................................................................................................................................................................................................................................................................................................................................1740.250.25-------0.25------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................GCAGCTGGACCCTGAG................1660.170.17---------------------------------------------------------0.17----------------------------------------------------

Antisense strand
CTGCTTCGGGAGATGCTGGCCAAAATTGAAGATAAGAATGAGGTCCTAGAGTAAGTGGGGGACAAATGGTGGGGGGTGTGTATACACCAGGTTTCCCGCCTCCCTGACCAGAGTCTAGATCTAGACTGTAGGTGTTAATGTGCTTGTACCAGTGCTTGGGCATAGCTACTAGGCCATGTAGTATTAGAGAGGTAAAGGTGACAATTTTCTCTCTGCTAAGTCTTCAGTCTAGTTCCAGTGGAGGGGATGGACCAAGCAGGCTCTCTATGTGGAAGGAACTGGGCCAGCCCAGCATCCACCCGATCCTGTGTCATCCCTCTTCCTTCCCTAGTCAGTTCATGGACTCCATGCAGCTGGACCCTGAGACAGTGGACAACTTGG
..............................................................................................................................................................................................................................................................................((((((((..(((...((.(((.(((.....))).))).))...)))..))))))))......................................................
........................................................................................................................................................................................................................................................................265...............................................................331................................................
SizePerfect hitTotal NormPerfect NormSRR390298(GSM849856)
cell line: NIH-3T3cell type: fibroblastinfect. (fibroblast)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		mjLiverKO2()
Liver Data. (Zcchc11 liver)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesWT4()
Testes Data. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		mjTestesWT3()
Testes Data. (testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR206940(GSM723281)
other. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR206942(GSM723283)
other. (brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		GSM317183(GSM317183)
Ago-1 IP small RNAs from mouse brain. (ago1 brain)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR014236(GSM319960)
10 dpp total. (testes)		RuiDcrWT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR037923(GSM510461)
e9p5_rep1. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR037907(GSM510443)
brain_rep4. (brain)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR306536(GSM750579)
19-24nt. (ago2 brain)
........................................................................................................................................................................................................................TAAGTCTTCAGTCTAAAAA.................................................................................................................................................. 192.000.00---2.00----------------------------------------------------------------------------------------------------------
............................................................................................TTCCCGCCTCCCTGAGAGA.............................................................................................................................................................................................................................................................................. 191.000.00-----------------------1.00--------------------------------------------------------------------------------------
..........................................................................................GTTTCCCGCCTCCCTGAAC................................................................................................................................................................................................................................................................................ 191.000.00-----------------------1.00--------------------------------------------------------------------------------------
......................AAATTGAAGATAAGAATGAGGTCCTA............................................................................................................................................................................................................................................................................................................................................. 2611.001.00--------------------1.00-----------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................CCAGCATCCACCCGAAG............................................................................ 171.000.00-----------------------1.00--------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................TCCACCCGATCCTGTGC...................................................................... 171.000.00------------------------------------------------------1.00-------------------------------------------------------
.........................................................................................................................................................................................................................................................................................GGCCAGCCCAGCATCCA................................................................................... 1750.600.60---0.60----------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................GTGTCATCCCTCTTC........................................................... 1590.110.11-----------------------0.11--------------------------------------------------------------------------------------
...........................................................................................................CCAGAGTCTAGATCT................................................................................................................................................................................................................................................................... 15100.100.10-0.10------------------------------------------------------------------------------------------------------------