ID: uc009ntb.13
GENE: 2310061F22Rik(16)
chr8:125010794-125010959-


(2)
AGO1.ip 		(2)
AGO2.ip 		(1)
AGO3.ip 		(7)
B-CELL 		(7)
BRAIN 		(3)
CELL-LINE 		(2)
DCR.mut 		(7)
EMBRYO 		(11)
ESC 		(7)
FIBROBLAST 		(1)
HEART 		(1)
KIDNEY 		(4)
LIVER 		(2)
LUNG 		(1)
LYMPH 		(15)
OTHER 		(6)
OTHER.mut 		(3)
PIWI.ip 		(2)
PIWI.mut 		(3)
SKIN 		(5)
SPLEEN 		(17)
TESTES 		(2)
THYMUS 		(2)
UTERUS

Sense strand
TCCCGAGGCCTAGCAAGCGCTTTTGGATGACAGCTATCGTCTTCACTGAGGTGGGTAGCAGCTTGTAGGGTAGGGGCTGGGCCACATGGCCCATGGCTGAGTGCCCTGTCCTGCAGGTCATGGTGGTCACCAAATACCTGTTCCAGTTCGGCTTCTTCCCCTGGAA
...............................................................((((((..(((((((.(((((.........))))).))).))))..))))))...................................................
.........................................................58........................................................116................................................
SizePerfect hitTotal NormPerfect NormSRR390298(GSM849856)
cell line: NIH-3T3cell type: fibroblastinfect. (fibroblast)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR073954(GSM629280)
total RNA. (blood)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		mjTestesWT2()
Testes Data. (testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR059774(GSM562836)
MEF_control. (MEF)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		mjLiverWT3()
Liver Data. (liver)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR073955(GSM629281)
total RNA. (blood)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
..............................................................TTGTAGGGTAGGGGCTGGG.....................................................................................192162.00162.00161.00---0.50--0.50---------------------------------------------------------------------------------------
.................................CTATCGTCTTCACTGAG....................................................................................................................17129.0029.00----4.00--3.001.001.002.006.00---1.00--2.00---3.001.001.00---------------1.00-------------------------1.00--1.00----------------------1.00--
..............................................................TTGTAGGGTAGGGGCTGGGCCA..................................................................................22115.0015.00---1.00-1.00---------------3.00-----2.00--------1.00--1.00-2.001.00-----------------------------1.001.00----------------1.00----
................................GCTATCGTCTTCACTGAG....................................................................................................................18114.0014.00-----1.00--5.001.002.00----1.00-------2.001.00-------------------------------1.00--------------------------------------
......................................................................................................................................TACCTGTTCCAGTTCGGCTTCTTCCCCTGT..3010.000.00-10.00---------------------------------------------------------------------------------------------
..............................................................TTGTAGGGTAGGGGCTGGGCC...................................................................................2118.008.00--2.002.001.00--------2.00-----------------------------1.00---------------------------------------------------
..............AAGCGCTTTTGGATGACAGCTATCGTCTT...........................................................................................................................2917.007.00---7.00-------------------------------------------------------------------------------------------
...............................................................TGTAGGGTAGGGGCTGGGCCA..................................................................................2115.005.00-----1.00----------1.00------------------1.00-----------------------------------1.00---1.00-------------------
................................................................................................CTGAGTGCCCTGTCCTGCAGT.................................................215.000.00-5.00---------------------------------------------------------------------------------------------
...............................................................TGTAGGGTAGGGGCTGGGCC...................................................................................2015.005.00--1.00----2.00-------------------------------------------------1.00----------------------------1.00--------
...............................................................TGTAGGGTAGGGGCTGGGCCAT.................................................................................2215.005.00--3.00-------------1.00------------------------------------------1.00-----------------------------------
...............................................................TGTAGGGTAGGGGCTGGGCCATA................................................................................2314.005.00--------------3.00-------------------1.00------------------------------------------------------------
...............................................................TGTAGGGTAGGGGCTGGGCCAA.................................................................................2214.005.00--1.00------------------------1.00----------2.00--------------------------------------------------------
.................................................................TAGGGTAGGGGCTGGGCCA..................................................................................1914.004.00-----3.00-------------------------------------------------------------------------------1.00---------
..................................................................................CACATGGCCCATGGCTGAGT................................................................2013.003.00---------3.00-------------------------------------------------------------------------------------
...............................................................TGTAGGGTAGGGGCTGGG.....................................................................................1823.003.00-------1.00----------0.50----------0.50-------------0.500.50--------------------------------------------------
............................................................................................ATGGCTGAGTGCCCTGTCCTGC....................................................2213.003.00-2.001.00--------------------------------------------------------------------------------------------
.......................................................................AGGGGCTGGGCCACATGGCCC..........................................................................2112.002.00-------------2.00---------------------------------------------------------------------------------
..............AAGCGCTTTTGGATGACAGCT...................................................................................................................................2112.002.00------------------------------2.00----------------------------------------------------------------
...............................................................TGTAGGGTAGGGGCTGGGCCAAA................................................................................2312.005.00------2.00----------------------------------------------------------------------------------------
......................................................................................TGGCCCATGGCTGAGTGCCCTGTC........................................................2412.002.00----------------------------------------1.00----------------------------------------------1.00-------
..........................................................................................................................................TGTTCCAGTTCGGCTAAA..........182.000.00-------------------------------------2.00---------------------------------------------------------
....................TTTTGGATGACAGCTATCG...............................................................................................................................1912.002.00----------2.00------------------------------------------------------------------------------------
...............................................................TGTAGGGTAGGGGCTGGGCCAAT................................................................................2312.005.00-----------------1.00------------------------------------------1.00----------------------------------
...............................................................................................GCTGAGTGCCCTGTCCTGCAGT.................................................222.000.00--1.00------------------------------1.00-------------------------------------------------------------
..............................................................TTGTAGGGTAGGGGCTGAAA....................................................................................202.000.00-----2.00-----------------------------------------------------------------------------------------
...............................................................TGTAGGGTAGGGGCTGGGCCT..................................................................................2112.005.00--------------1.00-----------1.00--------------------------------------------------------------------
..............................................................TTGTAGGGTAGGGGCTGGGCA...................................................................................2122.001.50-------------1.00--------------------------------------------------------1.00------------------------
..............................................................TTGTAGGGTAGGGGCTGGGC....................................................................................2021.501.50--0.50----------------------------------------------------------------------------1.00---------------
..............................................................TTGTAGGGTAGGGGCTGGGCCAAA................................................................................2411.0015.00--1.00--------------------------------------------------------------------------------------------
...........................................................AGCTTGTAGGGTAGGCTTT........................................................................................191.000.00-------------------------1.00---------------------------------------------------------------------
...............AGCGCTTTTGGATGACAGCTATCG...............................................................................................................................2411.001.00----------------------------------------------------------------------------1.00------------------
..................................................GTGGGTAGCAGCTTGTAGGGTAGGGG..........................................................................................2611.001.00--------------------------------------------------------------1.00--------------------------------
..................................TATCGTCTTCACTGAG....................................................................................................................1611.001.00----1.00------------------------------------------------------------------------------------------
...............................................................TGTAGGGTAGGGGCTGGGCCAG.................................................................................2211.005.00----1.00------------------------------------------------------------------------------------------
..................................................GTGGGTAGCAGCTTGTAGG.................................................................................................1911.001.00-------------------------1.00---------------------------------------------------------------------
.............................................................CTTGTAGGGTAGGGGCTGGGCCAT.................................................................................241.000.00----1.00------------------------------------------------------------------------------------------
.....................................................................................................................................ATACCTGTTCCAGTTCGGCTT............2111.001.00-----------------------------------1.00-----------------------------------------------------------
.............................ACAGCTATCGTCTTCACTGA.....................................................................................................................2011.001.00------------------------------------------------------------------------------------1.00----------
............................................................................................ATGGCTGAGTGCCCTGTCCTGCAG..................................................2411.001.00-----------------------------------------------------------------------------------1.00-----------
......................................................................................................................................TACCTGTTCCAGTTCGGCT.............1911.001.00--------------------------------------------------------------------------------1.00--------------
........................................................................................................................TGGTGGTCACCAAATACCTGTTCCAGT...................2711.001.00--------------------------------------------------------------------------1.00--------------------
..............................................................TTGTAGGGTAGGGGCTGGGCCAT.................................................................................2311.0015.00--1.00--------------------------------------------------------------------------------------------
.......................TGGATGACAGCTATCGTCTTCACTG......................................................................................................................2511.001.00----------------------------------------------------------------1.00------------------------------
...............................................................TGTAGGGTAGGGGCTGGGCATT.................................................................................2221.001.00------1.00----------------------------------------------------------------------------------------
..............................................................TTGTAGGGTAGGGGCTGTGC....................................................................................201.000.00----------------1.00------------------------------------------------------------------------------
...............................................................TGTAGGGTAGGGGCTGGGCCATTTT..............................................................................2511.005.00--------------------1.00--------------------------------------------------------------------------
.............................................................CTTGTAGGGTAGGGGCTGGGCCT..................................................................................231.000.00-----------------1.00-----------------------------------------------------------------------------
............................................................................................ATGGCTGAGTGCCCTGTCCTGCA...................................................2311.001.00------------------------------------------------1.00----------------------------------------------
...............................................................TGTAGGGTAGGGGCTGGGC....................................................................................1921.001.00---------------------------------------------0.50------------------------------------------------0.50
..................................................................AGGGTAGGGGCTGGGCCACATGGCCCAT........................................................................2811.001.00--------------------------1.00--------------------------------------------------------------------
..............................................................TTGTAGGGTAGGGGCTGGGCCATT................................................................................2411.0015.00--1.00--------------------------------------------------------------------------------------------
...............................................................TGTAGGGTAGGGGCTGGGCCAATT...............................................................................2411.005.00---------------------------------------------------------------------------------1.00-------------
..............................................................TTGTAGGGTAGGGGCTGGGCCAAAC...............................................................................2511.0015.00------------------------------------1.00----------------------------------------------------------
.....................TTTGGATGACAGCTATC................................................................................................................................1711.001.00-------------------------------1.00---------------------------------------------------------------
...........................TGACAGCTATCGTCTTCACTGAGGT..................................................................................................................2511.001.00--1.00--------------------------------------------------------------------------------------------
...............................................................................................................................CACCAAATACCTGTTCCA.....................1811.001.00------------------------1.00----------------------------------------------------------------------
.........................................................................................CCCATGGCTGAGTGCCCTGTCCTGCAGAA................................................291.000.00-------------1.00---------------------------------------------------------------------------------
..............................................................TTGTAGGGTAGGGGCTGGGCCAA.................................................................................2311.0015.00--1.00--------------------------------------------------------------------------------------------
...............................................................TGTAGGGTAGGGGCTGGGAAAA.................................................................................2221.003.00------1.00----------------------------------------------------------------------------------------
...................................................................................................................................................TCGGCTTCTTCCCCTGGA.1811.001.00-------------------------------------------------------------1.00---------------------------------
..............................................................TTGTAGGGTAGGGGCTGGGCCATAA...............................................................................2511.0015.00---------------1.00-------------------------------------------------------------------------------
..............................CAGCTATCGTCTTCACTGAG....................................................................................................................2011.001.00--------------1.00--------------------------------------------------------------------------------
..........TAGCAAGCGCTTTTGGATGACAGCTA..................................................................................................................................2611.001.00---------------------------------------------------------------1.00-------------------------------
..................................................GTGGGTAGCAGCTTGTAGGGTAGGGGCTGGGCCACATGGCCCATGGCTGAGTGCCCTGTCCTG.....................................................6311.001.00----------------------------------------------------------------------------------------1.00------
...............................................................TGTAGGGTAGGGGCTGGGCTT..................................................................................2121.001.00------------------------------------------------------------------------------1.00----------------
............................................................................................ATGGCTGAGTGCCCTGTCCTA.....................................................211.000.00-----------------------------1.00-----------------------------------------------------------------
............................................................................................ATGGCTGAGTGCCCTGTCCTGCT...................................................2311.003.00-------------------------------------------------------------------------------------------1.00---
....................................................GGGTAGCAGCTTGTAGGGTAGGGGCTGTG.....................................................................................291.000.00--------------------------1.00--------------------------------------------------------------------
.............................................................CTTGTAGGGTAGGGGCTGGGCCAAT................................................................................251.000.00----------------------------------------------------------1.00------------------------------------
..............................................................TTGTAGGGTAGGGGCTGGGCCATTTT..............................................................................2611.0015.00--------------------------------------------------1.00--------------------------------------------
.................................................................TAGGGTAGGGGCTGGGCCAT.................................................................................2011.004.00-----------------------------------------------------1.00-----------------------------------------
..............................................................TTGTAGGGTAGGGGCTGGGTATA.................................................................................2321.00162.00----1.00------------------------------------------------------------------------------------------
..............................................................TTGTAGGGTAGGGGCTGGGGC...................................................................................2121.00162.00-----------------------------------------------------------------------------1.00-----------------
................................................................................................CTGAGTGCCCTGTCCTGCAGTT................................................221.000.00------------------------------------------1.00----------------------------------------------------
........................................................AGCAGCTTGTAGGGTAGGGGCTGGGCC...................................................................................2711.001.00-------------------------------1.00---------------------------------------------------------------
..............................................................TTGTAGGGTAGGGGCTGGGAAA..................................................................................2221.00162.00------------------1.00----------------------------------------------------------------------------
..................................................GTGGGTAGCAGCTTGTAGGGTAGTGGC.........................................................................................271.000.00-----------------------------------------------------------------1.00-----------------------------
...............................................................TGTAGGGTAGGGGCTGGGAAA..................................................................................2121.003.00--------------------------------1.00--------------------------------------------------------------
..............................................................................................GGCTGAGTGCCCTGTCCGGTT...................................................211.000.00-----------------------------1.00-----------------------------------------------------------------
..................GCTTTTGGATGACAGCTATCGTCT............................................................................................................................2411.001.00-----------------------------------------------1.00-----------------------------------------------
............................................................................................ATGGCTGAGTGCCCTGTCCTGCAGT.................................................2511.001.00---------------------------------------------1.00-------------------------------------------------
.................................................................................................................................CCAAATACCTGTTCCAGTT..................1911.001.00---------1.00-------------------------------------------------------------------------------------
...............................................................TGTAGGGTAGGGGCTGGA.....................................................................................181.000.00---------------------------------------------------1.00-------------------------------------------
...............................................................TGTAGGGTAGGGGCTGGGCCAC.................................................................................2211.001.00--------------------1.00--------------------------------------------------------------------------
..................................................GTGGGTAGCAGCTTGTAGGGGAGA............................................................................................241.000.00----------------------------------1.00------------------------------------------------------------
..............................................................TTGTAGGGTAGGGGCTGGGCATAT................................................................................2421.001.50--------------------1.00--------------------------------------------------------------------------
.................................................................TAGGGTAGGGGCTGGGCC...................................................................................1811.001.00---------------1.00-------------------------------------------------------------------------------
.........................................................GCAGCTTGTAGGGTAGGGGCTGGG.....................................................................................2411.001.00---------------1.00-------------------------------------------------------------------------------
..............................................................TTGTAGGGTAGGGGCTGGGCCAAAT...............................................................................2511.0015.00-----------------------------------------------------------------------------------------1.00-----
.............................................................CTTGTAGGGTAGGGGCTGGA.....................................................................................201.000.00--------------------------------------------------------------------1.00--------------------------
...............................................................TGTAGGGTAGGGGCTGGGCAT..................................................................................2121.001.00--------------------------------1.00--------------------------------------------------------------
..............................................................TTGTAGGGTAGGGGCTGGGCCACA................................................................................2411.001.00---------------------------------------------------------------------------------------------1.00-
...............................................................TGTAGGGTAGGGGCTGGGCCAAAA...............................................................................2411.005.00-----------------1.00-----------------------------------------------------------------------------
...............................................................TGTAGGGTAGGGGCTGGGCCAAAAA..............................................................................2511.005.00------1.00----------------------------------------------------------------------------------------
...............................................................TGTAGGGTAGGGGCTGGGGCAA.................................................................................2221.003.00--1.00--------------------------------------------------------------------------------------------
..............................................................TTGTAGGGTAGGGGCTGGGCCT..................................................................................2211.008.00-------------------------------------------------------1.00---------------------------------------
............................................................GCTTGTAGGGTAGGGGCTGGGC....................................................................................2211.001.00----------------1.00------------------------------------------------------------------------------
...............................................................TGTAGGGTAGGGGCTGGGCCATT................................................................................2311.005.00--1.00--------------------------------------------------------------------------------------------
.............................................................CTTGTAGGGTAGGGGCTGGGCCC..................................................................................231.000.00----------------------------------------------------1.00------------------------------------------
..............................................................TTGTAGGGTAGGGGCTGGAC....................................................................................201.000.00-------------------------1.00---------------------------------------------------------------------
..............................................................................................GGCTGAGTGCCCTGTCCTACAT..................................................221.000.00---------------------------------1.00-------------------------------------------------------------
.......................TGGATGACAGCTATCGTCTTCACTGAG....................................................................................................................2711.001.00---------------------------------------1.00-------------------------------------------------------
..............................................................TTGTAGGGTAGGGGCTGGGCCATTT...............................................................................2511.0015.00------1.00----------------------------------------------------------------------------------------
.................................................................TAGGGTAGGGGCTGGGCCG..................................................................................1911.001.00------1.00----------------------------------------------------------------------------------------
..............................................................TTGTAGGGTAGGGGCTGGGCCATTAT..............................................................................2611.0015.00--------------------------------------------1.00--------------------------------------------------
..............................................................TTGTAGGGTAGGGGCTGGGCCAAT................................................................................2411.0015.00-----------------1.00-----------------------------------------------------------------------------
..................................................................AGGGTAGGGGCTGGGC....................................................................................1660.670.67-----0.67-----------------------------------------------------------------------------------------
.................................................................TAGGGTAGGGGCTGGGC....................................................................................1730.330.33-----------------------------------------------0.33-----------------------------------------------
.................................................................TAGGGTAGGGGCTGGGCAA..................................................................................1930.330.33----------------------------------------------0.33------------------------------------------------

Antisense strand
TCCCGAGGCCTAGCAAGCGCTTTTGGATGACAGCTATCGTCTTCACTGAGGTGGGTAGCAGCTTGTAGGGTAGGGGCTGGGCCACATGGCCCATGGCTGAGTGCCCTGTCCTGCAGGTCATGGTGGTCACCAAATACCTGTTCCAGTTCGGCTTCTTCCCCTGGAA
...............................................................((((((..(((((((.(((((.........))))).))).))))..))))))...................................................
.........................................................58........................................................116................................................
SizePerfect hitTotal NormPerfect NormSRR390298(GSM849856)
cell line: NIH-3T3cell type: fibroblastinfect. (fibroblast)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR073954(GSM629280)
total RNA. (blood)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		mjTestesWT2()
Testes Data. (testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR059774(GSM562836)
MEF_control. (MEF)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		mjLiverWT3()
Liver Data. (liver)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR073955(GSM629281)
total RNA. (blood)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
..............................................................................GGGCCACATGGCCCATGGCTGAGTG............................................................... 2514.004.00------------4.00----------------------------------------------------------------------------------
...................................................................................................................................................TCGGCTTCTTCCCCTCG.. 173.000.00-------------------3.00---------------------------------------------------------------------------
....................................................................................................................................AATACCTGTTCCAGTTCGGCTTCTTC........ 2611.001.00----------------------------1.00------------------------------------------------------------------
.........................................TTCACTGAGGTGGGTAGCAGCTTGTA................................................................................................... 2611.001.00----------------------------1.00------------------------------------------------------------------
.........CTAGCAAGCGCTTTTA............................................................................................................................................. 161.000.00-------------------------------------------------1.00---------------------------------------------
...CGAGGCCTAGCAAGCGCTA................................................................................................................................................ 191.000.00----------------------------------------------1.00------------------------------------------------
...................................................................................................................................................TCGGCTTCTTCCCCTCGTG 191.000.00----------------------------------------------------------------------------------1.00------------
...................................................................................................................................................TCGGCTTCTTCCCCTCGGG 191.000.00------------------------------------------------------1.00----------------------------------------
.............................................................................................TGGCTGAGTGCCCTGTCCTGCAGGTCAA............................................. 281.000.00----------------------------1.00------------------------------------------------------------------
..................................................................................CACATGGCCCATGGCTGAGTGTCCC........................................................... 251.000.00------------1.00----------------------------------------------------------------------------------
...............................................................................GGCCACATGGCCCATGGCTGAGTGA.............................................................. 251.000.00------------1.00----------------------------------------------------------------------------------
....................................................................................................................................AATACCTGTTCCAGTTCGGCTTCT.......... 2411.001.00--------------1.00--------------------------------------------------------------------------------
................................................................................GCCACATGGCCCATGGTA.................................................................... 181.000.00-------------------------------------------------------------------1.00---------------------------
...................................................................................................................................................TCGGCTTCTTCCCC..... 1490.110.11-------------------0.11---------------------------------------------------------------------------