ID: uc009mwj.2
GENE: AK220210(2)
chr8:97005480-97005729+


(1)
AGO2.ip 		(3)
B-CELL 		(7)
BRAIN 		(1)
CELL-LINE 		(1)
EMBRYO 		(1)
HEART 		(1)
KIDNEY 		(5)
LIVER 		(4)
LYMPH 		(3)
OTHER 		(2)
OTHER.mut 		(1)
PIWI.ip 		(10)
SPLEEN 		(7)
TESTES 		(1)
THYMUS 		(1)
UTERUS

Sense strand
AGCTGAGACTGGAAGTAGAGTCTTTAATCTCCCAGAAATACCTCATTTAGCCCCTGAGTCATTGGTGAACTCAAGACTCAGGCACATTGTACACCTAAGCCCTGGGAGTAGACCTCATTTCATAAGGCTGTCACCTACCACCTGGGGCTTCCAAGTGCCCATTCCCACAGCTGAGGGATTGGGTCTTGGTCTCCCTGCAGTTTGCATGACAACCAGCTCAAGGACCCAGAGGTGCTGAGTCTTGTGGAGC
................................................................................................((((((..((.((((....((..((....)).))....))))..))..))))))(((((.(((((.((((........)))).)))))))))).............................................................
..........................................................................................91...........................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR059769(GSM562831)
Treg_Drosha. (spleen)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		mjLiverWT3()
Liver Data. (liver)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR077864(GSM637801)
18-30 nt small RNAs. (liver)		SRR073954(GSM629280)
total RNA. (blood)		mjTestesWT1()
Testes Data. (testes)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM475281(GSM475281)
total RNA. (testes)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR553582(SRX182788)
source: Brain. (Brain)		GSM475280(GSM475280)
Mili-IP. (mili testes)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
..................................................................................................................................................................................TTGGGTCTTGGTCTCCCTGCAGT.................................................23114.0014.009.00---1.00-----1.00-------------1.001.00------------1.00------
..................................................................................................................................................................................TTGGGTCTTGGTCTCCCTGCAG..................................................22110.0010.003.002.00--1.00------------1.00-------------1.00--1.00--------1.00-
.................................................................................................................................................................................ATTGGGTCTTGGTCTCCCTGCAGT.................................................2415.005.002.001.00---1.00---------1.00-----------------------------
.................................................................................................................................................................................ATTGGGTCTTGGTCTCCCTGCAT..................................................2315.002.002.00-------1.001.00----1.00------------------------------
..................................................................................................................................................................................TTGGGTCTTGGTCTCCCTGCAGA.................................................2314.0010.00-1.00--------1.00--------1.00----------1.00--------------
..................................................................................................................................................................................TTGGGTCTTGGTCTCCCTGCAGTT................................................2414.004.002.001.00--1.00----------------------------------------
.................................................................................................................................................................................ATTGGGTCTTGGTCTCCCT......................................................1914.004.00--1.00--1.001.00-------------------1.00------------------
...................................................................................................................................................................................TGGGTCTTGGTCTCCCTGCAGT.................................................2214.004.001.00---1.00-------2.00--------------------------------
..................................................................................................................................................................................TTGGGTCTTGGTCTCCCTGCAT..................................................2213.001.002.00-1.00------------------------------------------
.................................................................................................................................................................................ATTGGGTCTTGGTCTCCCTGCAG..................................................2313.003.00-1.001.00----1.00-------------------------------------
.................................................................................................................................................................................ATTGGGTCTTGGTCTCCCTGCAGA.................................................2412.003.00-------1.00---------------------------------1.00---
.......ACTGGAAGTAGAGTCTATAG...............................................................................................................................................................................................................................202.000.00-----------1.00-1.00-------------------------------
..................................................................................................................................................................................TTGGGTCTTGGTCTCCCT......................................................1812.002.00-----1.00--------------------------1.00------------
.................................................................................................................................................................................ATTGGGTCTTGGTCTCCCTGCA...................................................2212.002.001.00------------------------------------1.00-------
.......ACTGGAAGTAGAGTCTTTGTG..............................................................................................................................................................................................................................211.000.00-----------1.00---------------------------------
.................................................................................................................................................................................ATTGGGTCTTGGTCTCCCTTT....................................................2111.004.001.00--------------------------------------------
...................................................................................................................................................................................TGGGTCTTGGTCTCCCTGCAG..................................................2111.001.00-1.00-------------------------------------------
.......ACTGGAAGTAGAGTCTGATG...............................................................................................................................................................................................................................201.000.00---1.00-----------------------------------------
..................................................................................................................................................................................TTGGGTCTTGGTCTCCCTGCAAGT................................................2411.001.00---------1.00-----------------------------------
...............................................................................................TAAGCCCTGGGAGTAGAC.........................................................................................................................................1811.001.00--------------------------------------------1.00
.................................................................................................................................................................................ATTGGGTCTTGGTCTCCCTGT....................................................2111.001.001.00--------------------------------------------
.................................................................................................................................................................................ATTGGGTCTTGGTCTCCCTGTT...................................................2211.001.001.00--------------------------------------------
...........................................................................................................................................................................................................................AAGGACCCAGAGGTGTTT.............181.000.00---------------------------------1.00-----------
..................................................................................................................................................................................TTGGGTCTTGGTCTCCCTGCA...................................................2111.001.00--------1.00------------------------------------
............................................................................................................................................................................................................CATGACAACCAGCTCAAGGACCCAGA....................2611.001.00--1.00------------------------------------------
...........................................................................................................................................ACCTGGGGCTTCCAAGTGCC...........................................................................................2011.001.00-----------------------1.00---------------------
.......ACTGGAAGTAGAGTCGAAA................................................................................................................................................................................................................................191.000.00---1.00-----------------------------------------
.......ACTGGAAGTAGAGTCGTG.................................................................................................................................................................................................................................181.000.00---------------------------1.00-----------------
..CTGAGACTGGAAGTATTCT.....................................................................................................................................................................................................................................191.000.00---------------------1.00-----------------------
..................................................................................................................................................................................TTGGGTCTTGGTCTCCCTGCAGTAT...............................................2511.0014.001.00--------------------------------------------
..................................................................................................................................................................................TTGGGTCTTGGTCTCCCTGCAATT................................................2411.001.00---------------1.00-----------------------------
.......ACTGGAAGTAGAGTCTAAAG...............................................................................................................................................................................................................................201.000.00---1.00-----------------------------------------
.................................................................................................................................................................................ATTGGGTCTTGGTCTCCCTG.....................................................2011.001.00----------------------1.00----------------------
.................................................................................................................................................................................ATTGGGTCTTGGTCTCCCTGCAGTT................................................2511.001.001.00--------------------------------------------
...................................................................................................CCCTGGGAGTAGACCGCA.....................................................................................................................................181.000.00------------------1.00--------------------------
...........................................................................................................................................................................................................GCATGACAACCAGCTCAAGGACCCA......................2511.001.00------1.00--------------------------------------
..................................................................................................................................................................................TTGGGTCTTGGTCTCCCTGCAGATT...............................................2511.0010.00--1.00------------------------------------------
.......ACTGGAAGTAGAGTCAAA.................................................................................................................................................................................................................................181.000.00-----------------------------1.00---------------
.................................................................................................................................................................................ATTGGGTCTTGGTCTCCCTGCAGTAT...............................................2611.005.001.00--------------------------------------------
................................................................................................................................................................................GATTGGGTCTTGGTCTCCCTGT....................................................221.000.001.00--------------------------------------------
.................................................................................................................................................................................ATTGGGTCTTGGTCTCCCTGCATAAT...............................................2611.002.001.00--------------------------------------------
.......ACTGGAAGTAGAGTCTGAAG...............................................................................................................................................................................................................................201.000.00---1.00-----------------------------------------
.................................................................................................................................................................................ATTGGGTCTTGGTCTCCCTACAG..................................................2311.004.00----------------------------1.00----------------
.................................................................................................................................................................................ATTGGGTCTTGGTCTCCCTGCAGTTT...............................................2611.001.001.00--------------------------------------------
..................................................................................................................................................................................TTGGGTCTTGGTCTCCCTGCAGAAT...............................................2511.0010.00--------------1.00------------------------------
..................................................................................................................................................................................TTGGGTCTTGGTCTCCCTGCAAAA................................................2411.001.00-1.00-------------------------------------------
..................................................................................................................................................................................TTGGGTCTTGGTCTCCCTGCAA..................................................2211.001.00---------------------------------------1.00-----
.......ACTGGAAGTAGAGTCTGAA................................................................................................................................................................................................................................191.000.00-------------1.00-------------------------------
................................................................................................................................................................................................................ACAACCAGCTCAAGGACCCA......................2011.001.00--------------------1.00------------------------
..................................................................................................................................................................................TTGGGTCTTGGTCTCCCTGCAGTAA...............................................2511.0014.001.00--------------------------------------------
...............................................TAGCCCCTGAGTCATTGGTGA......................................................................................................................................................................................2111.001.00------1.00--------------------------------------
................................................................GTGAACTCAAGACTC...........................................................................................................................................................................1550.200.20-------0.20-------------------------------------

Antisense strand
AGCTGAGACTGGAAGTAGAGTCTTTAATCTCCCAGAAATACCTCATTTAGCCCCTGAGTCATTGGTGAACTCAAGACTCAGGCACATTGTACACCTAAGCCCTGGGAGTAGACCTCATTTCATAAGGCTGTCACCTACCACCTGGGGCTTCCAAGTGCCCATTCCCACAGCTGAGGGATTGGGTCTTGGTCTCCCTGCAGTTTGCATGACAACCAGCTCAAGGACCCAGAGGTGCTGAGTCTTGTGGAGC
................................................................................................((((((..((.((((....((..((....)).))....))))..))..))))))(((((.(((((.((((........)))).)))))))))).............................................................
..........................................................................................91...........................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR059769(GSM562831)
Treg_Drosha. (spleen)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		mjLiverWT3()
Liver Data. (liver)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR077864(GSM637801)
18-30 nt small RNAs. (liver)		SRR073954(GSM629280)
total RNA. (blood)		mjTestesWT1()
Testes Data. (testes)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM475281(GSM475281)
total RNA. (testes)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR553582(SRX182788)
source: Brain. (Brain)		GSM475280(GSM475280)
Mili-IP. (mili testes)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
................................................................................................................................................................................................................ACAACCAGCTCAAGGGCC........................ 181.000.00------------------------------------1.00--------
.............................................................................................................................................................................................TCTCCCTGCAGTTTGATA........................................... 181.000.00----------------1.00----------------------------
............................................................................................................................................CCTGGGGCTTCCAAGGCAC........................................................................................... 191.000.00----------------------------------------1.00----
.......................................................................................................................................................................................................................GCTCAAGGACCCAGAAAA................. 181.000.00------------------------------------------1.00--
.........................................................................................................................................CCACCTGGGGCTTCCAACA.............................................................................................. 191.000.00-----------------------------------1.00---------