ID: uc009mmg.0
GENE: Zswim4
chr8:86736655-86736904-


(1)
AGO.mut 		(1)
AGO1.ip 		(13)
AGO2.ip 		(2)
AGO3.ip 		(6)
B-CELL 		(33)
BRAIN 		(2)
CELL-LINE 		(2)
DCR.mut 		(1)
DGCR8.mut 		(8)
EMBRYO 		(6)
ESC 		(4)
FIBROBLAST 		(2)
KIDNEY 		(5)
LIVER 		(4)
LYMPH 		(10)
OTHER 		(8)
OTHER.mut 		(4)
PIWI.ip 		(1)
PIWI.mut 		(4)
SKIN 		(8)
SPLEEN 		(21)
TESTES 		(4)
THYMUS 		(1)
UTERUS

Sense strand
GATCTCTGAGTTTGAGGCCAAGTGGGGCTGCAGAGTGAGATTAACTGCACCCCTTCACATACACCCCCCCCCAAAAAAAAAACAAAAAACAAAAAAACTGATGAAGCTGGGAGGATTCAGAGCCAATGGTTGTAGGGTGGGAAGGGAAAGGGCAGGGTCTGGCTGCACAGATACACACTCTGCCCTCTCCCCACACCCAGGCCCACCAGCGCTGATGAGCATCATGAAGAACTGGTACTCCTTGTTCACC
......................................................................................................................................(((((....((((.((((((((((.((.((....))...)).)))))))))).))))..)))))....................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		mjTestesWT4()
Testes Data. (testes)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR206940(GSM723281)
other. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR038744(GSM527279)
small RNA-Seq. (brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR206942(GSM723283)
other. (brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR073955(GSM629281)
total RNA. (blood)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR060845(GSM561991)
total RNA. (brain)		SRR553582(SRX182788)
source: Brain. (Brain)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR051940(GSM545784)
18-32 nt total small RNAs (Mov10l+/-). (testes)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR028731(GSM400968)
Mili-wt-associated. (testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesWT3()
Testes Data. (testes)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR206939(GSM723280)
other. (brain)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		mjLiverWT1()
Liver Data. (liver)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR306528(GSM750571)
19-24nt. (ago2 brain)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		GSM314558(GSM314558)
ESC wild type (454). (ESC)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR059765(GSM562827)
DN3_control. (thymus)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		SRR042460(GSM539852)
mouse neutrophil cells replicate 2 [09-002]. (blood)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR037906(GSM510442)
brain_rep3. (brain)
..................................................................................................................................................................................TCTGCCCTCTCCCCACACCCAGT.................................................23148.005.00-5.004.00-1.001.00-----4.001.00-4.001.00---2.00-1.00-1.00-1.00----1.00-2.003.00-2.00----------1.00-1.002.00-2.001.00--1.00---1.00---------1.00-------------------1.00-1.00--1.00-------1.00---------------
..................................................................................................................................................................................TCTGCCCTCTCCCCACACCCAGA.................................................23120.005.00--1.00-2.00--7.00--------3.00---------1.00-------1.00-1.00----------2.00------------------------------1.00-----1.00---------------------------------
....................................................................................................................................................................................TGCCCTCTCCCCACACCCAGT.................................................2115.000.00-1.002.00--3.00--------1.00------1.00-1.00----1.00---1.00-1.00--------------------------1.00-------------------------------------------1.00----1.00-------
...................................................................................................................................................................................CTGCCCTCTCCCCACACCCAGT.................................................22115.001.00-----1.00---2.00--2.00---1.00-----2.00--1.00----1.00---1.00-------------1.00-----------------1.00------------1.00------------1.00-------------------------
.......................................................................................................................................................................................................................TGAGCATCATGAAGAACTGGTACTCCT........2716.006.00--------1.00----2.00------2.00-------------------1.00-----------------------------------------------------------------------------
........................................................................................................................................GTGGGAAGGGAAAGGGCAGGGT............................................................................................2215.005.00-1.00--------------------2.00----------------------------------------------------------1.00------------------1.00-----------------
...................................................................................................................................................................................CTGCCCTCTCCCCACACCCAGA.................................................2215.001.00-------------------1.00-------1.00-1.00----------------------------------------------------------------------------1.00----1.00------
..................................................................................................................................................................................TCTGCCCTCTCCCCACACCCAG..................................................2215.005.00--1.00-1.001.00-------------1.00--------------------------1.00-----------------------------------------------------------------------
....................................................................................................................................................................................TGCCCTCTCCCCACACCCAGA.................................................214.000.00------------2.00----------------------------------------1.00------------------------------------1.00---------------------------
.......................................................................................................................................................................................................................TGAGCATCATGAAGAACTGGTACTCCTT.......2813.003.00--------1.00----1.00-------------------------------------------------------------1.00------------------------------------------
................................................................................................................................................................................ACTCTGCCCTCTCCCCACACCCAGT.................................................253.000.00-----2.00----------------------------------------------------1.00-----------------------------------------------------------
............................................................................................................................................GAAGGGAAAGGGCAGGGTCT..........................................................................................2013.003.00---------------------1.00-----------------------1.00--------1.00---------------------------------------------------------------
.........................................................................................................................................TGGGAAGGGAAAGGGCAGGGTCT..........................................................................................2313.003.00-------------------------------------2.00-----------------------------1.00--------------------------------------------------
......................................................................CCAAAAAAAAAACAAAGATA................................................................................................................................................................203.000.00----------3.00-----------------------------------------------------------------------------------------------------------
....................................................................................................................................TAGGGTGGGAAGGGAAAGGGCAGGT.............................................................................................2512.001.00-------------------------------------------------------------------------------------------------------------1.00---1.00----
.........................................................................................................................................TGGGAAGGGAAAGGGCAGGGTC...........................................................................................2212.002.00-1.00----------------------------1.00---------------------------------------------------------------------------------------
....................................................................................................................................TAGGGTGGGAAGGGAAAGGG..................................................................................................2012.002.00-----------1.00------------------------------------------------1.00---------------------------------------------------------
..................................................................................................................................................................................TCTGCCCTCTCCCCACACCCAGC.................................................2312.005.001.00-----------------------------------------------------1.00---------------------------------------------------------------
..................................................................................................................................................................................TCTGCCCTCTCCCCACACCCA...................................................2112.002.00----1.00----------------------------------------------------1.00------------------------------------------------------------
......................................................................CCAAAAAAAAAACAAAGAGC................................................................................................................................................................202.000.00---2.00------------------------------------------------------------------------------------------------------------------
......................................................................CCAAAAAAAAAACAAAGAGG................................................................................................................................................................202.000.00---2.00------------------------------------------------------------------------------------------------------------------
......................................................................CCAAAAAAAAAACAAGGG..................................................................................................................................................................182.000.00------------------2.00---------------------------------------------------------------------------------------------------
...........................................................................................................................................GGAAGGGAAAGGGCAGGGTCTG.........................................................................................2212.002.00--------------------------------------------------1.00-------------------1.00-----------------------------------------------
.............................................................................................................................................AAGGGAAAGGGCAGGGTCTGGTAT.....................................................................................2412.002.002.00---------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................AAGGGAAAGGGCAGGGTCT..........................................................................................1912.002.00--------------------------1.00----------------------------------------------------------------------1.00--------------------
.....................................................................................................................................................................................................................GATGAGCATCATGAAGAACTGGT..............2312.002.00-----------------2.00----------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TCTGCCCTCTCCCCACACCCAGTT................................................2412.005.00---------------1.00------------1.00-----------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................ATGAAGAACTGGTACTC..........1712.002.00------------------------1.00-------------------1.00-------------------------------------------------------------------------
........................................................................................................................................GTGGGAAGGGAAAGGGCAGGG.............................................................................................2112.002.00---------2.00------------------------------------------------------------------------------------------------------------
......................................................................CCAAAAAAAAAACAAAGAGT................................................................................................................................................................202.000.00---2.00------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................CGCTGATGAGCATCATGAAGAACTGGT..............2712.002.00--------------------1.00-------------------1.00-----------------------------------------------------------------------------
...............................................................................................................................................................................CACTCTGCCCTCTCCCCACACCCAGT.................................................262.000.00--1.00-------------------------1.00-----------------------------------------------------------------------------------------
........................................................................................................................................................................................................................GAGCATCATGAAGAACTG................1822.002.00--------------------------------------2.00-------------------------------------------------------------------------------
.............................................................................................................................................AAGGGAAAGGGCAGGGTCTGG........................................................................................2112.002.00--------------------------------------------------------------------1.00--1.00----------------------------------------------
....................................................................................................................................TAGGGTGGGAAGGGAAAGGGCAG...............................................................................................2312.002.00-1.00-----------------------------1.00--------------------------------------------------------------------------------------
....................................................................................................................................TAGGGTGGGAAGGGAAAGG...................................................................................................1921.501.500.500.50---------0.50----------------------------------------------------------------------------------------------------------
............................................................................................................................................GAAGGGAAAGGGCAGGGTCTG.........................................................................................2111.001.00-----------------------------1.00----------------------------------------------------------------------------------------
.............................................................................................................................................AAGGGAAAGGGCAGGGTCTGAAA......................................................................................231.000.001.00---------------------------------------------------------------------------------------------------------------------
....................................................................................................................................TAGGGTGGGAAGGGAAAGGGCAT...............................................................................................231.000.00---------------1.00------------------------------------------------------------------------------------------------------
......................TGGGGCTGCAGAGTGTAT..................................................................................................................................................................................................................181.000.00--------------------------------------------1.00-------------------------------------------------------------------------
.............................................................................................................................................AAGGGAAAGGGCAGGGTCTGA........................................................................................211.000.00--------------------------------------------------1.00-------------------------------------------------------------------
...................................................................................................................................................................................CTGCCCTCTCCCCACACCCAGC.................................................2211.001.00-----------------------------1.00----------------------------------------------------------------------------------------
......................TGGGGCTGCAGAGTGTAC..................................................................................................................................................................................................................181.000.00------------------------1.00---------------------------------------------------------------------------------------------
...................................................................................................................................GTAGGGTGGGAAGGGAAAGGGCAG...............................................................................................2411.001.00---------------1.00------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CTGCCCTCTCCCCACACCCAGAA................................................2311.001.00----------------------------------------------------------------------------1.00-----------------------------------------
....................................................................................................................................................................................................................TGATGAGCATCATGAAGAACTGGTACT...........2711.001.00--------1.00-------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGGGAAGGGAAAGGGGTC...............................................................................................181.000.00-------------------------------1.00--------------------------------------------------------------------------------------
......................................................................CCAAAAAAAAAACAAAAGACC...............................................................................................................................................................211.000.00---1.00------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................ACTCTGCCCTCTCCCCACACCCAGA.................................................251.000.00----1.00-----------------------------------------------------------------------------------------------------------------
......................................................................CCAAAAAAAAAACAAAAAAGG...............................................................................................................................................................211.000.00---1.00------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................GCGCTGATGAGCATCATGAAGAACTGGT..............2811.001.00--------1.00-------------------------------------------------------------------------------------------------------------
........................................................................................................................................GTGGGAAGGGAAAGGGGGCT..............................................................................................201.000.001.00---------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CTGCCCTCTCCCCACACCCAG..................................................2111.001.00------------------------------------------1.00---------------------------------------------------------------------------
..................................................................CCCCCCAAAAAAAAAACAAAAAAGGTA.............................................................................................................................................................271.000.00------1.00---------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CTGCCCTCTCCCCACACCCAGTAAA..............................................2511.001.00-----------------------------------------------------------------------------------------------------1.00----------------
.................................................................................................................................................................................................................CGCTGATGAGCATCATGAAGAACTGGTA.............2811.001.00-------------1.00--------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................TCATGAAGAACTGGTACTCCTTGT.....2411.001.00-----------------------------------------------------------------1.00----------------------------------------------------
.............................................................................................................................................AAGGGAAAGGGCAGGGTCTGGAAT.....................................................................................2411.002.00------------------------------------1.00---------------------------------------------------------------------------------
.............................................................................................................................................AAGGGAAAGGGCAGGGTCTGT........................................................................................211.000.00-----------------------------------------------------------------------------------1.00----------------------------------
...................................................................................................................................................................................CTGCCCTCTCCCCACACCCAGTT................................................2311.001.00-------------------------------------------------------1.00--------------------------------------------------------------
....................................................................................................................................TAGGGTGGGAAGGGAAAGGGCAAA..............................................................................................241.000.00---------------------------------------1.00------------------------------------------------------------------------------
..TCTCTGAGTTTGAGGG........................................................................................................................................................................................................................................161.000.00-----------------------------------------1.00----------------------------------------------------------------------------
............................................................................................................................................GAAGGGAAAGGGCAGGGTCTGAAA......................................................................................2411.001.00-------------------------------------------------------------------------1.00--------------------------------------------
.........................................................................................................................................TGGGAAGGGAAAGGGCAGGAATT..........................................................................................231.000.00--------------------------------------------------------------------------------------1.00-------------------------------
............................................................................................................................................GAAGGGAAAGGGCAGGGTCTGA........................................................................................2211.001.00-------------------------------------------------------------------------------------------------------------------1.00--
............................................................................................................................................................................................................................ATCATGAAGAACTGGTACT...........1911.001.00-------------------------------------------1.00--------------------------------------------------------------------------
....................................................................................................................................................................................TGCCCTCTCCCCACACCCAGTTT...............................................231.000.00----------------------------------------------------------------------------------------------------------------1.00-----
............................................................................................................................................GAAGGGAAAGGGCAGGGTCTGAA.......................................................................................2311.001.001.00---------------------------------------------------------------------------------------------------------------------
....................................................................................................................................TAGGGTGGGAAGGGAAAGGT..................................................................................................2021.001.50----0.50----------------------------------------------------------------------------------------------------------------0.50
....................................................................................................................................TAGGGTGGGAAGGGAAAGGGCAGGG.............................................................................................2511.001.00----------------------------------------------------------------------------------------1.00-----------------------------
............................................................................................................................................................................................................ACCAGCGCTGATGAGCATCATGAAGAAC..................2811.001.00-------------1.00--------------------------------------------------------------------------------------------------------
.............................................................................................................................................AAGGGAAAGGGCAGGGTCTGGATT.....................................................................................2411.002.001.00---------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................CACTCTGCCCTCTCCCCACACCT....................................................231.000.00----1.00-----------------------------------------------------------------------------------------------------------------
..........................................................................................................................................GGGAAGGGAAAGGGCAGGGTCT..........................................................................................2211.001.00-----------------------------------------------------------1.00----------------------------------------------------------
.............................................................................................................................................AAGGGAAAGGGCAGGGTCTGTAT......................................................................................231.000.00---------1.00------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................CATGAAGAACTGGTACT...........1711.001.00--------------------------------------------------------------------------------1.00-------------------------------------
......................................................................CCAAAAAAAAAACAAGCG..................................................................................................................................................................181.000.00----------1.00-----------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGGGAAGGGAAAGGGCAA...............................................................................................181.000.00---------------------1.00------------------------------------------------------------------------------------------------
....................................................................................................................................TAGGGTGGGAAGGGAAAGTAA.................................................................................................211.000.00----1.00-----------------------------------------------------------------------------------------------------------------
........................................................................................................................................GTGGGAAGGGAAAGGGCAGG..............................................................................................2021.001.00--------------------------------------------------------0.50---0.50---------------------------------------------------------
..................................................................................................................................................................................................................................AAGAACTGGTACTCCTTGT.....1911.001.00-----------------1.00----------------------------------------------------------------------------------------------------
.................................................................................................................................................................................CTCTGCCCTCTCCCCACACCCAGT.................................................241.000.00--------------------------------------------------------------1.00-------------------------------------------------------
.....................................................................................................................................AGGGTGGGAAGGGAAAGGGCAG...............................................................................................2211.001.00-------------------------------1.00--------------------------------------------------------------------------------------
..............................................................................................................................................AGGGAAAGGGCAGGGTCTGTAA......................................................................................221.000.00------------------------------------------------------------------------1.00---------------------------------------------
..............................................................................................................................................................................................................................CATGAAGAACTGGTACTCCT........2011.001.00-------------------------------------------1.00--------------------------------------------------------------------------
....................................................................................................................................TAGGGTGGGAAGGGAAAGGGC.................................................................................................2111.001.001.00---------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................GGTGGGAAGGGAAAGGGAAGT..............................................................................................211.000.00------------------1.00---------------------------------------------------------------------------------------------------
...........................................................................................................................................GGAAGGGAAAGGGCAGGGTCT..........................................................................................2111.001.00--------------------------------------------------------------------------------------------------1.00-------------------
....................................................................................................................................TAGGGTGGGAAGGGAAAGGGCAGG..............................................................................................2411.001.00---------------------------------------1.00------------------------------------------------------------------------------
................................................................................................................................................................................................................................TGAAGAACTGGTACTCCTTG......2011.001.00----------------------------------------------------------------1.00-----------------------------------------------------
......................................................................CCAAAAAAAAAACAAAGGGG................................................................................................................................................................201.000.00---1.00------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................AGGGTGGGAAGGGAAAGGGCAGGGA............................................................................................2511.001.00------------------------------------------------------------------------------------------------------------1.00---------
.....................................................................................................................................AGGGTGGGAAGGGAAAGGGCAGGG.............................................................................................2411.001.00-----------------------------------------------------------------------------------------------------------1.00----------
...................................................................................................................................................................................CTGCCCTCTCCCCACACCC....................................................1911.001.00-------------------------1.00--------------------------------------------------------------------------------------------
........................................................................................................................................GTGGGAAGGGAAAGGGCAG...............................................................................................1921.001.00-----------------------0.50--------------------------------------------------------------------------------------------0.50-
....................................................................................................................................TAGGGTGGGAAGGGAAAGGGCTAT..............................................................................................2411.001.00---------------------------------------------------------1.00------------------------------------------------------------
....................................................................................................................................................................................................................TGATGAGCATCATGAAGAACTGGTAC............2611.001.00--------------------1.00-------------------------------------------------------------------------------------------------
.....................................................................................................................................AGGGTGGGAAGGGAAAGGGCAGGTT............................................................................................251.000.00----------------------------------------------------------1.00-----------------------------------------------------------
.....................................................................................................................................................................................................................GATGAGCATCATGAAGAACTGGTACTCCTT.......3011.001.00--------1.00-------------------------------------------------------------------------------------------------------------
.............................................................................................................................................AAGGGAAAGGGCAGGGTCTGAA.......................................................................................221.000.00-------------------------------------------------------------------------------------------------------1.00--------------
.............................................................................................................................ATGGTTGTAGGGTGGGAAGGG........................................................................................................2111.001.00----------1.00-----------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGGGAAGGGAAAGGGCAGGAAT...........................................................................................221.000.00-----------------1.00----------------------------------------------------------------------------------------------------
.........................................................................................................................................TGGGAAGGGAAAGGGCCTTA.............................................................................................201.000.00---------------------------------------------------------------------------------------1.00------------------------------
.............................................................................................................................................AAGGGAAAGGGCAGGGTCTGGAGTT....................................................................................2511.002.00--------------------------1.00-------------------------------------------------------------------------------------------
.........................................................................................................................................TGGGAAGGGAAAGGGCAGGGAAT..........................................................................................231.000.00---------1.00------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TCTGCCCTCTCCCCACACCCATT.................................................2311.002.00---------------1.00------------------------------------------------------------------------------------------------------
......................................................................CCAAAAAAAAAACAAAAGCG................................................................................................................................................................201.000.00----------1.00-----------------------------------------------------------------------------------------------------------
.............................................................................................................................................AAGGGAAAGGGCAGGGTCTGGATA.....................................................................................2411.002.001.00---------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................TGGCTGCACAGATACGGC.........................................................................181.000.00--------------------------------------------------------------------------------------------------------1.00-------------
......................................................................CCAAAAAAAAAACAAAAAAGATA.............................................................................................................................................................231.000.00-----------------------------------------1.00----------------------------------------------------------------------------
.............................................................................................................................................AAGGGAAAGGGCAGGGTCTGGAAA.....................................................................................2411.002.00---------------------------------------------------------------------------------------------------1.00------------------
...................................................................................................................................................................................CTGCCCTCTCCCCACACCCA...................................................2011.001.00------------------1.00---------------------------------------------------------------------------------------------------
...............................................................................................................................................................................CACTCTGCCCTCTCCCCACACT.....................................................221.000.00--------------------------------------------------------1.00-------------------------------------------------------------
.........................................................................................................................................................................................................................AGCATCATGAAGAACTGGTACTCCTTG......2711.001.00--------1.00-------------------------------------------------------------------------------------------------------------
...........................................................................................................................................GGAAGGGAAAGGGCAGGGTCTGTAAT.....................................................................................2611.002.00-------------------------------------------------------------------------------------1.00--------------------------------
...................................................................................................................................................................................CTGCCCTCTCCCCACACCCCG..................................................2111.001.00------------------------------------------1.00---------------------------------------------------------------------------
....................................................................................................................................TAGGGTGGGAAGGGAAAGA...................................................................................................191.000.00-----------------------------------------------------------------------------------------------1.00----------------------
............................................................................................................................................GAAGGGAAAGGGCAGGGTCTGGT.......................................................................................231.000.00----------------------------------------------------------------------------------1.00-----------------------------------
...................................................................CCCCCAAAAAAAAAACAAAAAACATT.............................................................................................................................................................261.000.00-----------------------------------------------------------------------------1.00----------------------------------------
.........................................................................................................................................TGGGAAGGGAAAGGGCAGGTT............................................................................................211.000.001.00---------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................CACTCTGCCCTCTCCCCACACCCAT..................................................251.000.00---------------------------1.00------------------------------------------------------------------------------------------
........................................................................................................................................GTGGGAAGGGAAAGGGCAGGGTC...........................................................................................2311.001.00-----------------------------------1.00----------------------------------------------------------------------------------
...................................................................................AAAAAACAAAAAAACTGCGG...................................................................................................................................................201.000.00------------------------1.00---------------------------------------------------------------------------------------------
......................TGGGGCTGCAGAGTGATT..................................................................................................................................................................................................................181.000.00------------------------------------------------------------------------------------------------------------------1.00---
........................................................................................................................................GTGGGAAGGGAAAGGGCAGGGTAT..........................................................................................2411.005.001.00---------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TGCCCTCTCCCCACACCCAGTA................................................221.000.00---------------------------1.00------------------------------------------------------------------------------------------
....................................................................................................................................TAGGGTGGGAAGGGAAAGGAA.................................................................................................2120.501.50----------------0.50-----------------------------------------------------------------------------------------------------
...................................................................................................................................................AAGGGCAGGGTCTGGCTG.....................................................................................1820.500.50--------------------------------------------------------0.50-------------------------------------------------------------
........................................................................................................................................GTGGGAAGGGAAAGGGCAGTA.............................................................................................2120.501.000.50---------------------------------------------------------------------------------------------------------------------
....................................................................................................................................TAGGGTGGGAAGGGAAAGGTAG................................................................................................2220.501.50------------------------------------0.50---------------------------------------------------------------------------------

Antisense strand
GATCTCTGAGTTTGAGGCCAAGTGGGGCTGCAGAGTGAGATTAACTGCACCCCTTCACATACACCCCCCCCCAAAAAAAAAACAAAAAACAAAAAAACTGATGAAGCTGGGAGGATTCAGAGCCAATGGTTGTAGGGTGGGAAGGGAAAGGGCAGGGTCTGGCTGCACAGATACACACTCTGCCCTCTCCCCACACCCAGGCCCACCAGCGCTGATGAGCATCATGAAGAACTGGTACTCCTTGTTCACC
......................................................................................................................................(((((....((((.((((((((((.((.((....))...)).)))))))))).))))..)))))....................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		mjTestesWT4()
Testes Data. (testes)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR206940(GSM723281)
other. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR038744(GSM527279)
small RNA-Seq. (brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR206942(GSM723283)
other. (brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR073955(GSM629281)
total RNA. (blood)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR060845(GSM561991)
total RNA. (brain)		SRR553582(SRX182788)
source: Brain. (Brain)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR051940(GSM545784)
18-32 nt total small RNAs (Mov10l+/-). (testes)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR028731(GSM400968)
Mili-wt-associated. (testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesWT3()
Testes Data. (testes)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR206939(GSM723280)
other. (brain)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		mjLiverWT1()
Liver Data. (liver)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR306528(GSM750571)
19-24nt. (ago2 brain)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		GSM314558(GSM314558)
ESC wild type (454). (ESC)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR059765(GSM562827)
DN3_control. (thymus)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		SRR042460(GSM539852)
mouse neutrophil cells replicate 2 [09-002]. (blood)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR037906(GSM510442)
brain_rep3. (brain)
........................................TTAACTGCACCCCTTC.................................................................................................................................................................................................. 1617.007.00------7.00---------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................ACACTCTGCCCTCTCCCCACA....................................................... 2112.002.00-----------------------1.00----------------------------1.00-----------------------------------------------------------------
..................................................................................................................................................................................TCTGCCCTCTCCCCACACCCAT.................................................. 2211.000.00---------------------------------------------1.00------------------------------------------------------------------------
.............................................................................................................................................................................CACACTCTGCCCTCTCCCTGG........................................................ 211.000.00---------------------------------------------------------------1.00------------------------------------------------------
....................................................................CCCCAAAAAAAAAACAAAAAAGA............................................................................................................................................................... 231.000.00---------------------------------------------------------------------------------------------1.00------------------------
.........................................TAACTGCACCCCTTCCTGA.............................................................................................................................................................................................. 191.000.00-----------------------------------------------------1.00----------------------------------------------------------------
..................................................................CCCCCCAAAAAAAAAAAAAA.................................................................................................................................................................... 201.000.00------------------------------------------------------------------------------------------------1.00---------------------
..................................................................CCCCCCAAAAAAAAACGGT..................................................................................................................................................................... 191.000.00--------------------------------------------------------------------------1.00-------------------------------------------