ID: uc009mlc.0
GENE: Cd97(19)
chr8:86247752-86247927-


(1)
AGO.mut 		(3)
AGO1.ip 		(10)
AGO2.ip 		(9)
B-CELL 		(20)
BRAIN 		(3)
CELL-LINE 		(1)
DGCR8.mut 		(7)
EMBRYO 		(11)
ESC 		(7)
FIBROBLAST 		(2)
HEART 		(1)
KIDNEY 		(10)
LIVER 		(2)
LUNG 		(3)
LYMPH 		(16)
OTHER 		(4)
OTHER.mut 		(1)
PANCREAS 		(5)
PIWI.ip 		(1)
SKIN 		(9)
SPLEEN 		(18)
TESTES 		(1)
THYMUS 		(5)
TOTAL-RNA 		(1)
UTERUS

Sense strand
ACACAGAGTTCAACTCTTCCACAACAGGCACTGGCACCAGCCAAACACGGGTAAGGGGCTGGCCTGCAGTGGGGCTGGGAGGGCAGGCCTAGGTGAGCTCAGCCTCAAAGGCCTCCTTCTCTGCAGGCTCTCAGGTCCTCAGAATCAGGGATGTGAAGGCGAGTTCCATGAAGGAC
.........................................................................((.(((((((.((((((...((((......)))).))))))))))))).))....................................................
................................................................65...........................................................126................................................
SizePerfect hitTotal NormPerfect NormSRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		mjLiverWT3()
Liver Data. (liver)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		mjTestesWT3()
Testes Data. (testes)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR073954(GSM629280)
total RNA. (blood)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR525240(SRA056111/SRX170316)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR525241(SRA056111/SRX170317)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR069834(GSM304914)
Analysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzer. (blood)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR059768(GSM562830)
Treg_control. (spleen)		mjTestesWT1()
Testes Data. (testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR525244(SRA056111/SRX170320)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR553586(SRX182792)
source: Testis. (testes)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesWT2()
Testes Data. (testes)		SRR060845(GSM561991)
total RNA. (brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR077864(GSM637801)
18-30 nt small RNAs. (liver)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)
.........................................................................................................CAAAGGCCTCCTTCTCTGCAGT.................................................221178.0038.0070.00-11.003.00-5.00-2.00--4.00-1.00--1.005.005.002.001.00--3.00-2.001.003.004.003.002.00-3.001.003.00-1.002.001.002.001.001.00--3.002.00-3.002.002.00-2.001.001.00------2.00--2.00----2.001.00-1.001.00-----------------1.00--1.001.00------1.00------1.00---1.00---1.001.00---1.001.00-----
.........................................................................................................CAAAGGCCTCCTTCTCTGCAG..................................................21138.0038.004.00-3.001.00---1.004.00-2.00--2.00----1.00----2.00-----1.001.00-1.00-------2.00----3.00--------2.001.00--2.00-----------------------1.00-1.00---1.00--1.00------1.00----------------------------
..................................................GTAAGGGGCTGGCCTGCAGTGGGGCTGGGAGGGCAGGCCTAGGTGAGCTCAGCCTCAAAGGCCTCCTTCTCTGCAG..................................................76122.0022.00-22.00-----------------------------------------------------------------------------------------------------------------------------
.........................................................................................................CAAAGGCCTCCTTCTCTGCAGA.................................................22115.0038.00---2.00---3.00----1.001.00-----2.00---------1.00--1.00---------1.00------------1.00----1.00---------------------------------1.00--------------------------------
..................................................GTAAGGGGCTGGCCTGCAGTGGGGCTGGGAGGGCAGGCCTAGGTGAGCTCAGCCTCAAAGGCCTCCTTCTCTGCA...................................................75112.0012.00-12.00-----------------------------------------------------------------------------------------------------------------------------
.........................................................................................................CAAAGGCCTCCTTCTCTGCAGTT................................................23110.0038.005.00--2.00----------------------1.00---1.00-----------------------------1.00------------------------------------------------------------------
.........................................................................................................CAAAGGCCTCCTTCTCTGCAGTTT...............................................2415.0038.00-----3.00----------------------------------------------------------------------------------------------------------------1.00---1.00----
..................................................GTAAGGGGCTGGCCTGCAGTGGGGCTGGGAGGGCAGGCCTAGGTGAGCTCAGCCTCAAAGGCCTCCTTCTC.......................................................7114.004.00-4.00-----------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................GAATCAGGGATGTGAAGGCGA..............2114.004.00----2.00---------------1.00-------------1.00--------------------------------------------------------------------------------------------
..................................................GTAAGGGGCTGGCCTGCAGTGGGGCTGGGAGGGCAGGCCTAGGTGAGCTCAGCCTCAAAGGCCTCCTTCTCTG.....................................................7314.004.00-4.00-----------------------------------------------------------------------------------------------------------------------------
..................................................GTAAGGGGCTGGCCTGCAGTGGGGCTGGGAGGGCAGGCCTAGGTGAGCTCAGCCTCAAAGGCCTCCTTCTCTGC....................................................7414.004.00-4.00-----------------------------------------------------------------------------------------------------------------------------
..........................................................................................................AAAGGCCTCCTTCTCTGCAGT.................................................214.000.00-------------------------1.00----------1.001.00------------------------------------------1.00----------------------------------------------
..................................................GTAAGGGGCTGGCCTGCAGTGGGGCTGGGAGGGCAGGCCTAGGTGAGCTCAGCCTCAAAGGCCTCCTTCTCTGCAGA.................................................7714.0022.00-4.00-----------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................AGAATCAGGGATGTGAAGGCG...............2113.003.00----1.00----------------------------------2.00---------------------------------------------------------------------------------------
...........................................................................................................................................CAGAATCAGGGATGTGAAGG.................2013.003.00---------3.00---------------------------------------------------------------------------------------------------------------------
.........................................................................................................CAAAGGCCTCCTTCTCTGCAGTAA...............................................2413.0038.00--------2.00------1.00---------------------------------------------------------------------------------------------------------------
..............................................................................................................................................AATCAGGGATGTGAAGGCGAGTTT..........2413.002.00-----------------------1.00-----------1.00-------------------------------------1.00-----------------------------------------------------
.........................................................................................................CAAAGGCCTCCTTCTCTGCAGTAG...............................................2413.0038.00--------------------------------------------------------------------------1.00--------1.00-1.00-----------------------------------------
.............................................................................................................................................GAATCAGGGATGTGAAGGCGAGTT...........2413.003.00----1.00-------------------------------------------------------------1.00--1.00---------------------------------------------------------
.....................................................................TGGGGCTGGGAGGGCAT..........................................................................................173.000.00---------3.00---------------------------------------------------------------------------------------------------------------------
.......GTTCAACTCTTCCACAACAGGC...................................................................................................................................................2212.002.00------------1.00-----------------------------------------------------------------------------------------------------1.00------------
..............................................................................................................................................AATCAGGGATGTGAAGGCG...............1912.002.00---1.00------------------------1.00--------------------------------------------------------------------------------------------------
..............................................................................................................................................AATCAGGGATGTGAAGGCGAGT............2212.002.00-------------1.00---------------------------------------------------------------------------------1.00-------------------------------
.........................................................................................................CAAAGGCCTCCTTCTCTGCAGTA................................................2312.0038.00-----------------------------------------------------1.00-----------------------------------------------------------------------1.00-
..............................................................................................................................................AATCAGGGATGTGAAGGCGAGTT...........2312.002.00-------------1.00------1.00----------------------------------------------------------------------------------------------------------
............................................................................................................................................AGAATCAGGGATGTGAAGGCGAGTTC..........2612.002.00--------------------1.001.00---------------------------------------------------------------------------------------------------------
...........................................................................................................................................CAGAATCAGGGATGTGAAGGCGAGTTCC.........2812.002.00------------------------------------------2.00------------------------------------------------------------------------------------
.........................................................................................................CAAAGGCCTCCTTCTCTGCAGAAA...............................................2412.0038.00---1.00-------1.00-------------------------------------------------------------------------------------------------------------------
............................................................................................................................................AGAATCAGGGATGTGAAGGCGAGT............2412.002.00-----------1.00------------------------------------------------------------1.00------------------------------------------------------
..........................................................................................................AAAGGCCTCCTTCTCTGCAGTA................................................222.000.00---------------2.00---------------------------------------------------------------------------------------------------------------
..................................................................................................................................................AGGGATGTGAAGGCGAGTTCC.........2112.002.00---------------------1.00------------1.00--------------------------------------------------------------------------------------------
.............................................................................................................................................GAATCAGGGATGTGAAGGCGAGT............2312.002.00----2.00--------------------------------------------------------------------------------------------------------------------------
.........................................................................................................CAAAGGCCTCCTTCTCTGCAGAA................................................2312.0038.00---------------------------------------------------1.00--------------------------------------------------------------------------1.00
.................................................................................................................................................CAGGGATGTGAAGGCGAGTT...........2012.002.00----1.00-------------------------------------------------------------------------------------------------------1.00------------------
..................................................................................................................................................AGGGATGTGAAGGCGAGT............1812.002.00-----------1.00------------------------------------------------------1.00------------------------------------------------------------
...................................................................................................................................................GGGATGTGAAGGCGAGTTCC.........2011.001.00----1.00--------------------------------------------------------------------------------------------------------------------------
.............CTCTTCCACAACAGGCACTGGCA............................................................................................................................................2311.001.00------------------------------1.00------------------------------------------------------------------------------------------------
................................................................................................GCTCAGCCTCAAAGGCCTCCTTT.........................................................231.000.00------------------------------------------------------------------------------------------------------1.00------------------------
........................................................................GGCTGGGAGGGCAGGCCTAGGTGAG...............................................................................2511.001.00--------------------------------------------1.00----------------------------------------------------------------------------------
..............................................................................................................................................AATCAGGGATGTGAAGGCGAGTTC..........2411.001.00-------------------------------------------------1.00-----------------------------------------------------------------------------
..........................................................................................................AAAGGCCTCCTTCTCTGCAGTTT...............................................231.000.001.00------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................GAATCAGGGATGTGAAGGCGAGTTT..........2511.003.00-----------1.00-------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................TCAGAATCAGGGATGTGAAGG.................2111.001.001.00------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................GAATCAGGGATGTGAAGGC................1911.001.00---------------------1.00---------------------------------------------------------------------------------------------------------
................................................................................................................................................TCAGGGATGTGAAGGCGAGTTCCATG......2611.001.00---------------------------------------------------------------------------------------1.00---------------------------------------
.........................................................................................................CAAAGGCCTCCTTCTCTGCAGTTGT..............................................2511.0038.00-------------------------------------------------------------------------------------------------------1.00-----------------------
..................................................GTAAGGGGCTGGCCTGCAGTGGGGCTGGGAGGGCAGGCCTAGGTGAGCTCAGCCTCAAAGGCCTCCTTCT........................................................7011.001.00-1.00-----------------------------------------------------------------------------------------------------------------------------
...........AACTCTTCCACAACAGGCACTGGC.............................................................................................................................................2411.001.00------------------------------1.00------------------------------------------------------------------------------------------------
...................................................................................CAGGCCTAGGTGAGCTCAGC.........................................................................2011.001.00-------------------------------------------------------------1.00-----------------------------------------------------------------
.............................................................GCCTGCAGTGGGGCTTGCC................................................................................................191.000.00----------------------------------------------------------------------------1.00--------------------------------------------------
..........................................................................................................................................TCAGAATCAGGGATGTGAAGGCGAATT...........271.000.00-------------------------------------------------1.00-----------------------------------------------------------------------------
..........................................................................................................................GCAGGCTCTCAGGTCGGTC...................................191.000.00-----------------------------------------------------------------------------------------------------------------1.00-------------
............................................................................................................................................AGAATCAGGGATGTGAAGGCGA..............2211.001.001.00------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................AATCAGGGATGTGAAGGCGAGTTCCT........261.000.00----------------------------------------------------1.00--------------------------------------------------------------------------
.........................................................................GCTGGGAGGGCAGGCCTAGGTGA................................................................................2311.001.00----------------------------------------------------------------------------------------------------------1.00--------------------
.........TCAACTCTTCCACAACAGGCACTGGCACC..........................................................................................................................................2911.001.00-----------------------------------------------------------------1.00-------------------------------------------------------------
...................................................................AGTGGGGCTGGGAGGGCAG..........................................................................................1911.001.00-----1.00-------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................TCAGGGATGTGAAGGCGAGTTCCA........2411.001.00--------------------------------------------------------------------------------------1.00----------------------------------------
..................................................GTAAGGGGCTGGCCTGCAGTGGGGCTGGGAGGGCAGGCCTAGGTGAGCTCAGCCTCAAAGGCCTCCTTCTCTGAAG..................................................7611.004.00-1.00-----------------------------------------------------------------------------------------------------------------------------
..................................................GTAAGGGGCTGGCCTGCAGTGGGGCTGGGAGGGCAGGCCTAGGTGAGCTCAGCCTCAAAGGCCTCCTTCTCTGCAA..................................................7611.0012.00-1.00-----------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................TCAGAATCAGGGATGTGAAGGA................2211.001.00---------------------------------------------------------------------------------1.00---------------------------------------------
.........................................................................................................CAAAGGCCTCCTTCTCTGCAGTAAT..............................................2511.0038.00-------------------------1.00-----------------------------------------------------------------------------------------------------
.......................................................................GGGCTGGGAGGGCAGTGGT......................................................................................191.000.00-------------------------------------------------------------------------------1.00-----------------------------------------------
.........................................................................................................CAAAGGCCTCCTTCTCTGTAGT.................................................221.000.00----------------------------------------------------------------------------------------------------------------1.00--------------
.................................................................................................................................................CAGGGATGTGAAGGCGAGTTCCA........2311.001.00---------------------1.00---------------------------------------------------------------------------------------------------------
.................TCCACAACAGGCACTGGCA............................................................................................................................................1911.001.00-------------------1.00-----------------------------------------------------------------------------------------------------------
................................................................................................................................TCTCAGGTCCTCAGAACT..............................181.000.00----------------------------------------------------------------------------------------------------------------------------1.00--
........................................................................GGCTGGGAGGGCAGGCCTAGGTGA................................................................................2411.001.001.00------------------------------------------------------------------------------------------------------------------------------
..................................................GTAAGGGGCTGGCCTGCAGTGGGGCTGGGAGGGCAGGCCTAGGTGAGCTCAGCCTCAAAGGCCTCCTTCTCTGCAGT.................................................7711.0022.00-1.00-----------------------------------------------------------------------------------------------------------------------------
...............CTTCCACAACAGGCACTGGCACCA.........................................................................................................................................2411.001.00-------------------------1.00-----------------------------------------------------------------------------------------------------
.........................................................................................................CAAAGGCCTCCTTCTCTGCAGTGA...............................................2411.0038.00-----------------------------------1.00-------------------------------------------------------------------------------------------
...........................................................................................................................................CAGAATCAGGGATGTGAAGGCG...............2211.001.00-----------------------------------------------------------------------------1.00-------------------------------------------------
..........................................................CTGGCCTGCAGTGGGGAG....................................................................................................181.000.00-----------------------------------------1.00-------------------------------------------------------------------------------------
..........................................................CTGGCCTGCAGTGGGCGC....................................................................................................181.000.00-----------------------------------------1.00-------------------------------------------------------------------------------------
.........................................................................................................................................CTCAGAATCAGGGATGTGAAGGCGA..............2511.001.00-----------1.00-------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................GGATGTGAAGGCGAGT............1611.001.00---------------------------------------------------------------------------------------------------------1.00---------------------
.........................................................................................................CAAAGGCCTCCTTCTCTGCATT.................................................221.000.00---------------1.00---------------------------------------------------------------------------------------------------------------
.........................................................................................................CAAAGGCCTCCTTCTCTGCAA..................................................211.000.001.00------------------------------------------------------------------------------------------------------------------------------
.............................................................GCCTGCAGTGGGGCTGTGTC...............................................................................................201.000.00---------------------------------------------------------------------------1.00---------------------------------------------------
...........................................................................................................................................CAGAATCAGGGATGTGAAGGCGA..............2311.001.00--------------------------------------1.00----------------------------------------------------------------------------------------
............................................................................................................................................AGAATCAGGGATGTGAAGGCGAGTTCA.........2711.002.00----1.00--------------------------------------------------------------------------------------------------------------------------
...............................TGGCACCAGCCAAACACGG..............................................................................................................................1911.001.00---1.00---------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................TCAGGGATGTGAAGGCGAGTTCC.........2311.001.00--------------------1.00----------------------------------------------------------------------------------------------------------
.....................................................................TGGGGCTGGGAGGGCAGTAAT......................................................................................211.000.00-----------------------------------------------------------------------------------------------------1.00-------------------------
...........................................................................................................................................CAGAATCAGGGATGTGAAGGCGAGT............2511.001.00-------------------------------------1.00-----------------------------------------------------------------------------------------
.........................................................................................................CAAAGGCCTCCTTCTCTGT....................................................191.000.001.00------------------------------------------------------------------------------------------------------------------------------
...................................................................AGTGGGGCTGGGAGGGCAGT.........................................................................................2011.001.00-------------------------------------------------------------1.00-----------------------------------------------------------------
..................................................................CAGTGGGGCTGGGAGGGCAGGCC.......................................................................................2311.001.00-----------------------1.00-------------------------------------------------------------------------------------------------------
............................................................................................................AGGCCTCCTTCTCTGCAGTTT...............................................211.000.00-------1.00-----------------------------------------------------------------------------------------------------------------------
................TTCCACAACAGGCACTGG..............................................................................................................................................1811.001.00--------------------------------------------------------------------------------------------------------1.00----------------------
.....................................................................TGGGGCTGGGAGGGCAGGCCTAGGTGAGCTCAGCCTCAAAGGCCTCCTTCTCTGCAGA.................................................581.000.00-1.00-----------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................ATCAGGGATGTGAAGGCGAGTTA..........231.000.00------------------------------------------------------------------------------------------------1.00------------------------------
..............................................................................................................................................AATCAGGGATGTGAAGGCGA..............2011.001.00----------------------------------1.00--------------------------------------------------------------------------------------------
.................................................................................................................................................CAGGGATGTGAAGGCGAGTTT..........2111.002.00--------------------------------------------------------------------------------------------------------------1.00----------------
......................................................................GGGGCTGGGAGGGCAGGCC.......................................................................................1920.500.50-------------------------------0.50-----------------------------------------------------------------------------------------------

Antisense strand
ACACAGAGTTCAACTCTTCCACAACAGGCACTGGCACCAGCCAAACACGGGTAAGGGGCTGGCCTGCAGTGGGGCTGGGAGGGCAGGCCTAGGTGAGCTCAGCCTCAAAGGCCTCCTTCTCTGCAGGCTCTCAGGTCCTCAGAATCAGGGATGTGAAGGCGAGTTCCATGAAGGAC
.........................................................................((.(((((((.((((((...((((......)))).))))))))))))).))....................................................
................................................................65...........................................................126................................................
SizePerfect hitTotal NormPerfect NormSRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		mjLiverWT3()
Liver Data. (liver)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		mjTestesWT3()
Testes Data. (testes)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR073954(GSM629280)
total RNA. (blood)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR525240(SRA056111/SRX170316)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR525241(SRA056111/SRX170317)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR069834(GSM304914)
Analysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzer. (blood)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR059768(GSM562830)
Treg_control. (spleen)		mjTestesWT1()
Testes Data. (testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR525244(SRA056111/SRX170320)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR553586(SRX182792)
source: Testis. (testes)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesWT2()
Testes Data. (testes)		SRR060845(GSM561991)
total RNA. (brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR077864(GSM637801)
18-30 nt small RNAs. (liver)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)
...................CACAACAGGCACTGGCAGA.......................................................................................................................................... 197.000.00------3.00-------2.00---------------------------------------------------------------------------1.00----------------------------1.00-------
..................................................................................................................CCTTCTCTGCAGGCTCTCAGGTCCTCA................................... 2714.004.00---------------------------------------------------------1.00------1.001.00-------------------------------------------1.00-----------------
..................................................................................................................CCTTCTCTGCAGGCTCTCAGGTCC...................................... 2412.002.00---------------------------------------------------------------2.00---------------------------------------------------------------
...................CACAACAGGCACTGGA............................................................................................................................................. 162.000.00------2.00------------------------------------------------------------------------------------------------------------------------
...................CACAACAGGCACTGGAGA........................................................................................................................................... 182.000.00--------------1.00------------------------------------------------------------------------------------------------------------1.00---
....AGAGTTCAACTCTTCCACAAC....................................................................................................................................................... 2112.002.00------------1.00-----------1.00------------------------------------------------------------------------------------------------------
...................................................................................................................CTTCTCTGCAGGCTCTCAGGTCCTCA................................... 2611.001.00---------------------------------------------------------1.00---------------------------------------------------------------------
...................CACAACAGGCACTGGCA............................................................................................................................................ 171.000.00--------------1.00----------------------------------------------------------------------------------------------------------------
..................................................................................................................CCTTCTCTGCAGGCTCTCAGGTCCTC.................................... 2611.001.00--------------------------------------------------------1.00----------------------------------------------------------------------
......................................................................................................................................GTCCTCAGAATCAGGGATGA...................... 201.000.00---------------------------------------------------------------------------------------------------------------------1.00---------
..................................................................................................................CCTTCTCTGCAGGCTCTCAGGTCCTCATT................................. 291.000.00---------------------------------------------------------------------------------------------------1.00---------------------------
.....................................................................................................................TCTCTGCAGGCTCTCAGGTCCTCAGAA................................ 2711.001.00------------------------------------------------------------------------------1.00------------------------------------------------
..............................................................................................................................GCTCTCAGGTCCTCATGAG............................... 191.000.00----------------------1.00--------------------------------------------------------------------------------------------------------
.................................................................................................................TCCTTCTCTGCAGGCTCTCAGGTCCTCA................................... 2811.001.00--------------------------------------------------------1.00----------------------------------------------------------------------
...................................................................................................CAGCCTCAAAGGCCTCCTTCTCTGCAGGG................................................ 291.000.00----------------------------------------------------------------1.00--------------------------------------------------------------
..............................................................................................................GCCTCCTTCTCTGCAGGCTCTCAGGTC....................................... 2711.001.00-------------------------------------------------------------------------------------------------1.00-----------------------------
..ACAGAGTTCAACTCTTCCACAAC....................................................................................................................................................... 2311.001.00------------------------1.00------------------------------------------------------------------------------------------------------
..................................................................................................................................TCAGGTCCTCAGAATCTT............................ 181.000.00-----------------------------------------------------1.00-------------------------------------------------------------------------
...CAGAGTTCAACTCTTCCACAACAGGC................................................................................................................................................... 2611.001.00------------------1.00------------------------------------------------------------------------------------------------------------
...................CACAACAGGCACTGGCAGAT......................................................................................................................................... 201.000.00------1.00------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................GCGAGTTCCATGAAGGGCC 191.000.00-----------------------------------------1.00-------------------------------------------------------------------------------------
..................CCACAACAGGCACTGGGA............................................................................................................................................ 181.000.00------1.00------------------------------------------------------------------------------------------------------------------------
...................CACAACAGGCACTGGAG............................................................................................................................................ 171.000.00--------------1.00----------------------------------------------------------------------------------------------------------------
......AGTTCAACTCTTCCAACT........................................................................................................................................................ 181.000.00------------1.00------------------------------------------------------------------------------------------------------------------
........................................................................................................................CTGCAGGCTCTCAGGT........................................ 1650.200.20--------------------------------0.20----------------------------------------------------------------------------------------------