ID: uc009mgj.7
GENE: Nwd1(7)
chr8:75198803-75199052+


(2)
AGO2.ip 		(20)
BRAIN 		(8)
CELL-LINE 		(2)
DCR.mut 		(1)
DGCR8.mut 		(1)
EMBRYO 		(1)
ESC 		(2)
OTHER 		(2)
OTHER.mut 		(1)
SPLEEN 		(3)
TESTES

Sense strand
AGAGTTATACTGCAGATAGAGGTTGCTGGCAGCATCTGGGGTGGAGTCCTGGTCAAGGCTCCACATTACATCAATCACAGCTCAGTGCCCACTACAGAGACCCATCAGCCTCAGTGCCAGAAATGTTGAGTTTAAGAGTCCAGGAAGACAGGATGACCATTCTCCAGCTCTCAGAATGATCCATTCCTTGTCCTCCACAGGGAACATGAGTTGGATCTCATGTCGGGGCATCTCTGGAGGCATTGAGGTC
..............................................................................................................................................(((.(((((((.((.((((((.........)))))).))...)))).))).)))......................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR206942(GSM723283)
other. (brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR206941(GSM723282)
other. (brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR073954(GSM629280)
total RNA. (blood)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR037935(GSM510473)
293cand3. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR037936(GSM510474)
293cand1. (cell line)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR206940(GSM723281)
other. (brain)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
.............................................................................................................................................AGGAAGACAGGATGACCATTCT.......................................................................................2215.005.001.00----3.00--1.00---------------------------
..............................................................................................................................................................................AATGATCCATTCCTTGTCCTCCA.....................................................2314.004.00-1.001.001.00--------------------------1.00-----
..............................................................................................................................................................................AATGATCCATTCCTTGTCCTCC......................................................2214.004.00-------2.00-------------------1.00---1.00----
............................................................................................................................................CAGGAAGACAGGATGACCATTC........................................................................................2213.003.00---1.00------------------1.00---------1.00---
...............................................................................................................................................................................ATGATCCATTCCTTGTCCTCCAC....................................................2313.003.00---------1.00----------------1.00------1.00--
...............................................................................................................................................................................ATGATCCATTCCTTGTCCT........................................................1913.003.00------3.00-----------------------------
..............................................................................................................................................................................AATGATCCATTCCTTGTCC.........................................................1912.002.001.00----------1.00------------------------
...............................................................................................................................................................................ATGATCCATTCCTTGTCCTCCACAGT.................................................2612.001.00-1.00-----1.00----------------------------
..........................................................................................................................................................................................................AACATGAGTTGGATCCTGT.............................191.000.00-------------1.00----------------------
..............................................................................................................................................................................AATGATCCATTCCTTGTCCTCCACAGT.................................................2711.001.00-1.00----------------------------------
..............................................................................................................................................................................AATGATCCATTCCTTGTCCTC.......................................................2111.001.00-----------1.00------------------------
..............................................................................................................................................................................AATGATCCATTCCTTGTCCTCCAT....................................................2411.004.00--1.00---------------------------------
...........................................................................................................................................CCAGGAAGACAGGATGACCATT.........................................................................................2211.001.001.00-----------------------------------
..................................TCTGGGGTGGAGTCCAC.......................................................................................................................................................................................................171.000.00--------------1.00---------------------
...............................................................................................................................................................................ATGATCCATTCCTTGTCCTCCACAG..................................................2511.001.00------------1.00-----------------------
..............................................................................................................................................................................AATGATCCATTCCTTGTCCTCCAC....................................................2411.001.00-1.00----------------------------------
...............................................................................................................................................................................ATGATCCATTCCTTGTCCTC.......................................................2011.001.00------------1.00-----------------------
..............................................................................................................................................................................AATGATCCATTCCTTGTCCTCCACAG..................................................2611.001.00--------1.00---------------------------
............................................................................................................................................................................................................CATGAGTTGGATCTCATGTCGGGGC.....................2511.001.00--1.00---------------------------------
...............................................................................................................................................................................ATGATCCATTCCTTGTCCTCC......................................................2111.001.00------------------------1.00-----------
.............................................................................................................................................AGGAAGACAGGATGACCATTC........................................................................................2111.001.00----1.00-------------------------------
............................................................................................................................................CAGGAAGACAGGATGACCATT.........................................................................................2111.001.001.00-----------------------------------
...........................................................................................................................................CCAGGAAGACAGGATGCAGA...........................................................................................201.000.00------------------1.00-----------------
..............................................................................................................................................................................AATGATCCATTCCTTGTCCTCCACT...................................................2511.001.00---------1.00--------------------------
............................................................................................................................................CAGGAAGACAGGATGACCAT..........................................................................................2011.001.00---1.00--------------------------------
...........................................................................................................................................CCAGGAAGACAGGATGACCAT..........................................................................................2111.001.00----1.00-------------------------------
................................................................................................................................................................................................................AGTTGGATCTCATGTCGG........................1820.500.50--------0.50---------------------------

Antisense strand
AGAGTTATACTGCAGATAGAGGTTGCTGGCAGCATCTGGGGTGGAGTCCTGGTCAAGGCTCCACATTACATCAATCACAGCTCAGTGCCCACTACAGAGACCCATCAGCCTCAGTGCCAGAAATGTTGAGTTTAAGAGTCCAGGAAGACAGGATGACCATTCTCCAGCTCTCAGAATGATCCATTCCTTGTCCTCCACAGGGAACATGAGTTGGATCTCATGTCGGGGCATCTCTGGAGGCATTGAGGTC
..............................................................................................................................................(((.(((((((.((.((((((.........)))))).))...)))).))).)))......................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR206942(GSM723283)
other. (brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR206941(GSM723282)
other. (brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR073954(GSM629280)
total RNA. (blood)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR037935(GSM510473)
293cand3. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR037936(GSM510474)
293cand1. (cell line)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR206940(GSM723281)
other. (brain)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
...............................................................................................................................................................................................................GAGTTGGATCTCATGTTGAG....................... 203.000.00----------2.00------------1.00------------
.............................................................................................................................................................................................................ATGAGTTGGATCTCATGTAGC........................ 211.000.00-----------------1.00------------------
.............................................................................................ACAGAGACCCATCAGCGGT.......................................................................................................................................... 191.000.00----------------------------1.00-------
.................................................................................................................................................................CTCCAGCTCTCAGAACTA....................................................................... 181.000.00---------------1.00--------------------
............................................................................................TACAGAGACCCATCAGAA............................................................................................................................................ 181.000.00-----------------------------1.00------
...............................................................................................................................................................................................................GAGTTGGATCTCATGTTGA........................ 191.000.00--------------------1.00---------------
.........................................................................................CACTACAGAGACCCAACA............................................................................................................................................... 181.000.00----1.00-------------------------------
.......................................................................................CCCACTACAGAGACCCGTA................................................................................................................................................ 191.000.00----------------1.00-------------------
.......................................................................CAATCACAGCTCAGTGCCACC.............................................................................................................................................................. 211.000.00-------------------------1.00----------
..............................................................................................................................................................................................................TGAGTTGGATCTCATGTGAGC....................... 211.000.00---------------------1.00--------------
............................GCAGCATCTGGGGTGGACG........................................................................................................................................................................................................... 191.000.00-------------------1.00----------------
...................................................................ACATCAATCACAGCTC....................................................................................................................................................................... 1620.500.50----------------------------------0.50-
.........................................................................................................................................................TGACCATTCTCCAGC.................................................................................. 1580.120.12-----------------------------------0.12