ID: uc009mdi.1
GENE: 1500034J01Rik(2)
chr8:73995967-73996143+


(1)
AGO.mut 		(3)
AGO1.ip 		(18)
AGO2.ip 		(2)
AGO3.ip 		(5)
B-CELL 		(34)
BRAIN 		(6)
CELL-LINE 		(3)
DCR.mut 		(3)
DGCR8.mut 		(12)
EMBRYO 		(6)
ESC 		(5)
FIBROBLAST 		(1)
HEART 		(1)
KIDNEY 		(5)
LIVER 		(1)
LUNG 		(1)
LYMPH 		(19)
OTHER 		(10)
OTHER.mut 		(6)
PIWI.ip 		(2)
PIWI.mut 		(8)
SKIN 		(7)
SPLEEN 		(30)
TESTES 		(2)
THYMUS 		(3)
TOTAL-RNA

Sense strand
ACAAGAGCAACTTCAGCAGGTTCCACGCGGACTCTGTGTGCAAGGCCTCGGTGAGTGTGGGGCTGGGGGTGGCGTCACTGTCCTGAGGATGAGGGTTGCCAGCTAACCCACCGCTCCCCATCCACAGAACCGCCGTCCCTCAGTATACCTGCCGACCCGAGAGTACCCGTCAGAACA
.......................................................((((((...((((((((((((.((......)))))).((((((.....)))))).))))))))..))))))...................................................
..................................................51..........................................................................127................................................
SizePerfect hitTotal NormPerfect NormSRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		mjTestesWT1()
Testes Data. (testes)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		mjTestesWT3()
Testes Data. (testes)		mjTestesWT2()
Testes Data. (testes)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		mjTestesWT4()
Testes Data. (testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR206940(GSM723281)
other. (brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR206942(GSM723283)
other. (brain)		GSM475281(GSM475281)
total RNA. (testes)		GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)		SRR306528(GSM750571)
19-24nt. (ago2 brain)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR069834(GSM304914)
Analysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzer. (blood)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR037901(GSM510437)
testes_rep2. (testes)		RuiDGCR8WT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR206939(GSM723280)
other. (brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR553584(SRX182790)
source: Heart. (Heart)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (gland)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR525240(SRA056111/SRX170316)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR206941(GSM723282)
other. (brain)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR553582(SRX182788)
source: Brain. (Brain)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR037902(GSM510438)
testes_rep3. (testes)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
..........................................................................................................CCCACCGCTCCCCATCCACAGT.................................................221235.0031.0028.0017.0012.004.007.008.00-10.005.00-10.00--3.008.009.008.003.003.005.002.00-3.006.002.005.00-1.005.005.002.002.003.002.001.00--1.00--1.002.004.00-1.002.002.002.001.001.00-3.001.00-3.001.001.002.001.003.00--3.00------2.001.00--1.00--1.00---1.00-2.001.00-2.00-----1.00------------1.00-1.001.00--1.00---1.00---1.00----------1.00-----1.00---1.00------
...........................................................................................................CCACCGCTCCCCATCCACAGT.................................................21143.009.007.005.00-6.002.00--2.00-----3.001.00--1.001.00-2.00---------1.00---1.001.00-----1.00--1.00-----------1.00---------------------------2.00------------1.00---1.00-------1.00------1.00--------------1.00--------------
..........................................................................................................CCCACCGCTCCCCATCCACAG..................................................21131.0031.003.002.004.002.003.002.00--3.00---3.00-----1.00--------------1.00---1.00--3.00--------------------------------------------------------------------------1.00----------1.00-------1.00-----------
..........................................................................................................CCCACCGCTCCCCATCCACAGA.................................................22129.0029.001.003.001.00-1.001.00-------3.00------1.00-1.00----1.00----1.001.00---1.00-------1.00-1.002.002.001.00-------------1.00--1.00-------------------------1.00------------------------------1.00--1.00------------1.00-----
...........................................................................................................CCACCGCTCCCCATCCACAGA.................................................21112.0012.00-1.005.00-1.00-------------------------1.00---------------------2.00-----------------------------------------------1.00------------------------1.00--------------------
...........................................................................................................CCACCGCTCCCCATCCACAG..................................................2019.009.001.001.001.001.00-1.00-----------1.00--------1.002.00----------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGGGGTGGCGTCACTGTCCTGAGGATGAGGGTTGCCAGCTAACCCACCGCTCCCCATCCACAGTT................................................798.000.00------8.00-------------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCACA...................................................2017.007.002.00-------1.00----------------------------------------------1.00---------------2.00---------------1.00----------------------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCCCAG..................................................217.000.00---2.003.00---2.00-----------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGGGGTGGCGTC.....................................................................................................2617.007.00---------6.00--------------------------------------------------------------------1.00-------------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGGGGTGGCGT......................................................................................................2516.006.00-----------3.00--------------1.00----1.00----------------------------------------------1.00-------------------------------------------------------------------
.....................TCCACGCGGACTCTGTGTGCAAGGCC..................................................................................................................................2616.006.00-----------------------------------------------------------------1.001.00-----1.00-----------------------------1.00------------------1.00--------------------1.00---
...................................................TGAGTGTGGGGCTGGGGGTGGCGT......................................................................................................2416.006.00---------------------6.00----------------------------------------------------------------------------------------------------------------------------
.......................................................................................................TAACCCACCGCTCCCCATCCACAGT.................................................2515.002.00-1.00------------------------------------------1.00--------1.00-1.00--------------------------------1.00---------------------------------------------------------
.....................................................................................................................................................TGCCGACCCGAGAGTACCCGTC......2214.004.00-------------------------------------------3.00-----------------------------------1.00------------------------------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCACAGC.................................................2214.0031.00-1.001.00---------------------2.00-------------------------------------------------------------------------------------------------------------------------
............................................................................................................CACCGCTCCCCATCCACAGT.................................................204.000.00-----------------------------------1.00-----------------------------------------------------1.00--1.00---------------------------------------1.00-------------
..................................................GTGAGTGTGGGGCTGGGGGTGGCGTCACTGTCCTGAGGATGAGGGTTGCCAGCTAACCCACCGCTCCCCATCCACAGA.................................................7813.003.00------3.00-------------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCACCGT.................................................2213.001.001.00--1.00------------------------------1.00---------------------------------------------------------------------------------------------------------------
.....................TCCACGCGGACTCTGTGTGCAAGGCCT.................................................................................................................................2713.003.00-------------------------------------------------------------2.00---1.00--------------------------------------------------------------------------------
.........................CGCGGACTCTGTGTGCAAGG....................................................................................................................................2013.003.00------------3.00-------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................TAACCCACCGCTCCCCATCCACA...................................................2313.003.00------------------1.00--------1.00-----------------------------1.00----------------------------------------------------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCACAGTT................................................2313.0031.00--1.00-------------------------------------------------------------1.00-----1.00---------------------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGAAGA...........................................................................................................203.000.00---------------------------------------3.00----------------------------------------------------------------------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCACACC.................................................2213.007.00--3.00-----------------------------------------------------------------------------------------------------------------------------------------------
...........................CGGACTCTGTGTGCAAGG....................................................................................................................................1812.002.00-----------2.00--------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................TAACCCACCGCTCCCCATCCACAG..................................................2412.002.00-1.00---1.00--------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................TGAGGATGAGGGTTGCCAGCTAACCCA...................................................................2712.002.00--------------------------2.00-----------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGGGGTGGCGTCA....................................................................................................2712.002.00---------------------------------------------------------------------------------------------------------1.00------------------------------1.00---------
..........................................................................................................CCCACCGCTCCCCATCCACATT.................................................2212.007.002.00-------------------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCACAGTA................................................2312.0031.00-1.00----------------------1.00-------------------------------------------------------------------------------------------------------------------------
...........................................................................................................CCACCGCTCCCCATCCACAGTT................................................2212.009.001.00-----------------1.00-------------------------------------------------------------------------------------------------------------------------------
..............................................................................TGTCCTGAGGATGAGGGTTGCCAGCTA........................................................................2712.002.00---------------------------------------------------------------------------------2.00----------------------------------------------------------------
..........................GCGGACTCTGTGTGCAAGGCCT.................................................................................................................................2212.002.00------------------------------------------------------------2.00-------------------------------------------------------------------------------------
...........................CGGACTCTGTGTGCAAG.....................................................................................................................................1712.002.00-----------2.00--------------------------------------------------------------------------------------------------------------------------------------
....................TTCCACGCGGACTCTGTGTGCAAGGCCT.................................................................................................................................2812.002.00-------------------------------------------------------------1.00----1.00-------------------------------------------------------------------------------
...........................................................................................................CCACCGCTCCCCATCCACAGTAA...............................................2312.009.00--------------------------------------------------2.00-----------------------------------------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGGGGTGGCG.......................................................................................................2412.002.00------------1.00---------------------------------------------1.00---------------------------------------------------------------------------------------
..................................................................................CTGAGGATGAGGGTTGCC.............................................................................1812.002.00-------------------------------1.00----------------------------------------------------------------1.00-------------------------------------------------
.............................................................GCTGGGGGTGGCGTCCGA..................................................................................................182.000.00-------------------2.00------------------------------------------------------------------------------------------------------------------------------
...................................................................................TGAGGATGAGGGTTGCCAGCTA........................................................................2212.002.00-----------------------------------------------------2.00--------------------------------------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGGGGTGGCGTCACTGTCCTGAGGATGAGGGTTGCCAGCTAACCCACCGCTCCCCATCCACAGT.................................................782.000.00------2.00-------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGGGGT...........................................................................................................2032.002.000.33-0.33----------------------0.33------------------0.330.33----------------------------------------0.33-----------------------------------------------------------
...............GCAGGTTCCACGCGGACTCT..............................................................................................................................................2011.001.00-------------------------------------------------------------------1.00------------------------------------------------------------------------------
......GCAACTTCAGCAGGTTCCACGCGGACTCT..............................................................................................................................................2911.001.00-----------------1.00--------------------------------------------------------------------------------------------------------------------------------
........................................................GTGGGGCTGGGGGTGGCGTCA....................................................................................................2111.001.00------------------------------------------------------------------------------------------------------------------------------------------1.00-------
...........................................................................................................CCACCGCTCCCCATCCACATA.................................................2111.001.00----------------------------------------------------------1.00---------------------------------------------------------------------------------------
...............................................................................................................................................................AGAGTACCCGTCAGAAC.1711.001.00------------------------------------1.00-------------------------------------------------------------------------------------------------------------
...................................GTGTGCAAGGCCTCGAACC...........................................................................................................................191.000.00----------------------1.00---------------------------------------------------------------------------------------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCACAGAAGT..............................................251.000.00-----------------------------------------------------------------------------------------------------------------------------------------1.00--------
..........................................................................................................CCCACCGCTCCCCATCCACAGAAA...............................................241.000.00-------------------------------------1.00------------------------------------------------------------------------------------------------------------
.....................TCCACGCGGACTCTGTGTGCAAGGC...................................................................................................................................2511.001.00------------1.00-------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................AGAGTACCCGTCAGAACCGGG2111.001.00--------------------------------------------------------1.00-----------------------------------------------------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCACAGCT................................................2311.0031.00-1.00------------------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCACAGG.................................................2211.0031.00----------1.00---------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................CACCGCTCCCCATCCACAGTAA...............................................221.000.00-------------------------------------------------------------------------------1.00------------------------------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCACAGTAT...............................................2411.0031.00-------------------------------------------------------------------------1.00------------------------------------------------------------------------
.............................................................................................................ACCGCTCCCCATCCACAGACCC..............................................221.000.00------------------------------------------------------------1.00-------------------------------------------------------------------------------------
.....................TCCACGCGGACTCTGTGTGCA.......................................................................................................................................2111.001.00--------------------1.00-----------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGGGGTGT.........................................................................................................2231.000.67--------------------------------------------------------------------------------------------------------------------------------1.00-----------------
....................TTCCACGCGGACTCTGTGTGCAAGGCCTC................................................................................................................................2911.001.00----------------------------------------------------------------------------------------------------------------------------------1.00---------------
...........................CGGACTCTGTGTGCAAGGCCTCGAACC...........................................................................................................................271.000.00------------------------------------------------------------------------------------------------------------1.00-------------------------------------
........................ACGCGGACTCTGTGTGCAAGGCC..................................................................................................................................2311.001.00-----------------------------------------------------------------------------------------------------------------------1.00--------------------------
..................................................GTGAGTGTGGGGCTGGGGGTGGCGGC.....................................................................................................2611.002.00------------1.00-------------------------------------------------------------------------------------------------------------------------------------
....................TTCCACGCGGACTCTGTGTGCAAGGTA..................................................................................................................................271.000.00----------------------------------------------------------------------------------------------------------------1.00---------------------------------
..................................................GTGAGTGTGGGGCTGGGGGTGGC........................................................................................................2311.001.00-----------------------------------------------------------------------------------------------------------------1.00--------------------------------
............................................................................................................CACCGCTCCCCATCCACAGTTA...............................................221.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGGGGTC..........................................................................................................2131.002.00---------------------------------------------------------------------------------------------------1.00----------------------------------------------
.........ACTTCAGCAGGTTCCACGCGGACTCTGT............................................................................................................................................2811.001.00-------------------------------------------1.00------------------------------------------------------------------------------------------------------
...................................................TGAGTGTGGGGCTGGGGGTGGCGTC.....................................................................................................2511.001.00---------------------------------------1.00----------------------------------------------------------------------------------------------------------
...................................................................................TGAGGATGAGGGTTGCCAGCTAA.......................................................................2311.001.00--------------------------------------------------------------------------------------1.00-----------------------------------------------------------
................................................................................................................................ACCGCCGTCCCTCAGT.................................1611.001.00------------------------------------------------------------------------------------------------------------------------1.00-------------------------
..................................................GTGAGTGTGGGGCTGGGGTGTA.........................................................................................................221.000.00-----------------------------------------------------------------------------------1.00--------------------------------------------------------------
...................................................................................TGAGGATGAGGGTTGCCA............................................................................1811.001.00--1.00-----------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................TAACCCACCGCTCCCCATCCAC....................................................2211.001.00-1.00------------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................CCACCGCTCCCCATCCACAGAA................................................2211.001.00----------------------1.00---------------------------------------------------------------------------------------------------------------------------
...................................................................................TGAGGATGAGGGTTGGGAA...........................................................................191.000.00---------------------------------------------------------------------------1.00----------------------------------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCCCA...................................................201.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................CCACCGCTCCCCATCCACAGCT................................................2211.009.001.00-------------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................TCAGTATACCTGCCGACCCGAGAGT.............2511.001.00--------------------------------------------------------------------------------------------------1.00-----------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCACAGTAA...............................................2411.0031.00-1.00------------------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCAC....................................................1911.001.00-----------------1.00--------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCACAGTTA...............................................2411.0031.00-----1.00--------------------------------------------------------------------------------------------------------------------------------------------
........................ACGCGGACTCTGTGTGC........................................................................................................................................1711.001.00-------------------------------------------------------------------------------------------------------------------------------------1.00------------
.......................................................................................................TAACCCACCGCTCCCCATCC......................................................2011.001.00-----------------1.00--------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................ATACCTGCCGACCCGAGAGT.............2011.001.00------------------------------------------------------------------------------------------1.00-------------------------------------------------------
.................................................................................................................................................TACCTGCCGACCCGAGAGTACCCGTC......2611.001.00------------------------------------------------------------------------1.00-------------------------------------------------------------------------
..........CTTCAGCAGGTTCCAGAGC....................................................................................................................................................191.000.00-------------------------------------------------------------------------------------------------------1.00------------------------------------------
..............................................................................TGTCCTGAGGATGAGGGTTG...............................................................................2011.001.00---------------------------------------------------------------------------------------------------------------------1.00----------------------------
...........................................................................................................CCACCGCTCCCCATCCACAGTTTT..............................................2411.009.00-----------------------------------------------------------------------------1.00--------------------------------------------------------------------
...........................................................................................................CCACCGCTCCCCATCCACCGT.................................................211.000.00----------------------------------------------1.00---------------------------------------------------------------------------------------------------
...................GTTCCACGCGGACTCTGTGTTCA.......................................................................................................................................2311.001.00----------------------------------------------------------------------------1.00---------------------------------------------------------------------
...................................................................................TGAGGATGAGGGTTGTA.............................................................................171.000.00--------------------------------------------------------------------------1.00-----------------------------------------------------------------------
.........................................................................................................ACCCACCGCTCCCCATCCACAGT.................................................231.000.00-----------------------------------------1.00--------------------------------------------------------------------------------------------------------
...AGAGCAACTTCAGCAAGT............................................................................................................................................................181.000.00---------------------------------------------------------------------------------------------------------------------------------------------1.00----
........AACTTCAGCAGGTTCCACGCGGACTCTG.............................................................................................................................................2811.001.00--------------------------------------1.00-----------------------------------------------------------------------------------------------------------
...................................................TGAGTGTGGGGCTGGGCG............................................................................................................181.000.00--------------------------------------------------------------------------1.00-----------------------------------------------------------------------
.......................................................................................................TAACCCACCGCTCCCCATCCACACT.................................................2511.003.00-1.00------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................GTGGCGTCACTGTCCTGAGGATGAG....................................................................................2511.001.00--------------------------------------------------------------------------------------------------------------------------1.00-----------------------
...................................................................................................................................................CCTGCCGACCCGAGAGTACCCGTCAGT...271.000.00-----------------------------------------------------------------------------1.00--------------------------------------------------------------------
..AAGAGCAACTTCAGCAGGTTCC.........................................................................................................................................................2211.001.00--------------------1.00-----------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................CCCGAGAGTACCCGTCAGA...1911.001.00-----------------------------------1.00--------------------------------------------------------------------------------------------------------------
.........................................................................GTCACTGTCCTGAGGATGAGGGTTGCCAGC..........................................................................3011.001.00---------------------------------------------------------------------------------------------------------------------------1.00----------------------
...................GTTCCACGCGGACTCTGTGT..........................................................................................................................................2011.001.00--------------------------------------------------------------------------------1.00-----------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGAT.............................................................................................................181.000.00----------------------------------1.00---------------------------------------------------------------------------------------------------------------
...........................................................................................................CCACCGCTCCCCATCCACA...................................................1911.001.001.00-------------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGGGGTG..........................................................................................................2130.670.67------------------------0.33----------------------------------------------------------------------------------------------------------------------0.33--
..................................................GTGAGTGTGGGGCTGGGGGTGG.........................................................................................................2230.330.33-----------------------------------------------------------------------------------------------------------------------------------------------0.33--
..................................................GTGAGTGTGGGGCTGGGGG............................................................................................................1930.330.33----------------0.33---------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGGGGTTAT........................................................................................................2330.332.00-0.33------------------------------------------------------------------------------------------------------------------------------------------------
..............................ACTCTGTGTGCAAGGC...................................................................................................................................1660.170.17------------------------------------------------------------------------------------------------------------------------------------------------0.17-
..................................................GTGAGTGTGGGGCTGGG..............................................................................................................1790.110.11-------------------------------------------------------------------------------------------------------------------------------------------------0.11

Antisense strand
ACAAGAGCAACTTCAGCAGGTTCCACGCGGACTCTGTGTGCAAGGCCTCGGTGAGTGTGGGGCTGGGGGTGGCGTCACTGTCCTGAGGATGAGGGTTGCCAGCTAACCCACCGCTCCCCATCCACAGAACCGCCGTCCCTCAGTATACCTGCCGACCCGAGAGTACCCGTCAGAACA
.......................................................((((((...((((((((((((.((......)))))).((((((.....)))))).))))))))..))))))...................................................
..................................................51..........................................................................127................................................
SizePerfect hitTotal NormPerfect NormSRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		mjTestesWT1()
Testes Data. (testes)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		mjTestesWT3()
Testes Data. (testes)		mjTestesWT2()
Testes Data. (testes)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		mjTestesWT4()
Testes Data. (testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR206940(GSM723281)
other. (brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR206942(GSM723283)
other. (brain)		GSM475281(GSM475281)
total RNA. (testes)		GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)		SRR306528(GSM750571)
19-24nt. (ago2 brain)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR069834(GSM304914)
Analysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzer. (blood)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR037901(GSM510437)
testes_rep2. (testes)		RuiDGCR8WT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR206939(GSM723280)
other. (brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR553584(SRX182790)
source: Heart. (Heart)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (gland)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR525240(SRA056111/SRX170316)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR206941(GSM723282)
other. (brain)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR553582(SRX182788)
source: Brain. (Brain)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR037902(GSM510438)
testes_rep3. (testes)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
...................................................................................................................................................CCTGCCGACCCGAGAGTACCCGTCA..... 2516.006.00---------5.00-1.00--------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................GCCGTCCCTCAGTATACCTGCCGAA..................... 252.000.00------------------------------------2.00-------------------------------------------------------------------------------------------------------------
.................................................................................................................................................TACCTGCCGACCCGAGAGTACCCGTCA..... 2712.002.00-----------2.00--------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................GCCGACCCGAGAGTACCCGTCAGAACA 2712.002.00--------------------------------------2.00-----------------------------------------------------------------------------------------------------------
......................................................................................................CTAACCCACCGCTCCTCGG........................................................ 191.000.00--------------------------------------------------------------------1.00-----------------------------------------------------------------------------
......................................................................................................................................................GCCGACCCGAGAGTACCCGTCAGAA.. 2511.001.00--------------------------------------1.00-----------------------------------------------------------------------------------------------------------
.....................................................................................................................................................TGCCGACCCGAGAGTACCCGTCAGA... 2511.001.00------------1.00-------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................CCACCGCTCCCCATCCCGCT.................................................. 201.000.00-----------------------------------------------------------------------------------------------1.00--------------------------------------------------
................................................................................................................................ACCGCCGTCCCTCAG.................................. 1511.001.00---------------------------------------------------------------1.00----------------------------------------------------------------------------------
..............................................................................TGTCCTGAGGATGAGAAC................................................................................. 181.000.00---------------------------------------------------------------------------------------------------------------1.00----------------------------------
................CAGGTTCCACGCGG................................................................................................................................................... 1411.001.00---------------------------------------------------------------1.00----------------------------------------------------------------------------------
.................................................................................................................................CCGCCGTCCCTCAGTGAGT............................. 191.000.00-----------------------------------1.00--------------------------------------------------------------------------------------------------------------
....................................TGTGCAAGGCCTCGGAG............................................................................................................................ 171.000.00----------------------------------------------------------------------------------------------1.00---------------------------------------------------
...................................................................................................................................GCCGTCCCTCAGTATACC............................ 1811.001.00--------------------------1.00-----------------------------------------------------------------------------------------------------------------------
......................................................................................................CTAACCCACCGCTCCGGGG........................................................ 191.000.00--------------------------------------------------------------------1.00-----------------------------------------------------------------------------
.........................................................................................................................................CCTCAGTATACCTGCCGACCCGAGA............... 2511.001.00------------------------------------1.00-------------------------------------------------------------------------------------------------------------
.................................................................................................................................CCGCCGTCCCTCA................................... 1350.200.20---------------------------------------------------------------0.20----------------------------------------------------------------------------------