ID: uc009jrb.3
GENE: Cd19(9)
chr7:133553858-133554048-


(12)
B-CELL 		(3)
BRAIN 		(1)
CELL-LINE 		(1)
LIVER 		(1)
OTHER 		(1)
OTHER.mut 		(2)
PIWI.ip 		(2)
SPLEEN 		(5)
TESTES

Sense strand
TTATGAAAATGCAGATGAGGAGCTGGCCCAACCAGTTGGCAGGATGATGGGTGTGTATTTGAGTGAGCGAGGGCTGTCACTCTTGGAAGAAGCTGGAGACCAGGAAAAAAAGTGATATCTTTGTCTCTTTTCTTGTTCCAGACTTCCTGAGCCCCCATGGGTCTGCGTGGGACCCCAGCCGGGAAGCATCC
...................................................................................(((((.(((..((((((.((((............)))).))))))...))).)))))...................................................
.............................................................................78.............................................................141................................................
SizePerfect hitTotal NormPerfect NormSRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		mjLiverWT3()
Liver Data. (liver)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR553586(SRX182792)
source: Testis. (testes)		SRR037937(GSM510475)
293cand2. (cell line)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		mjTestesWT3()
Testes Data. (testes)
................................CAGTTGGCAGGATGATGG.............................................................................................................................................18114.0014.003.002.006.00-1.00--1.00-1.00---------------
..................................................................................TTGGAAGAAGCTGGAGACCAGGA......................................................................................23111.0011.001.001.00-2.00-2.001.001.001.001.00----------1.00----
..................................................................................TTGGAAGAAGCTGGAGACCAGG.......................................................................................22110.0010.00-1.002.00-1.004.001.00-1.00----------------
..........GCAGATGAGGAGCTGGCCC..................................................................................................................................................................1913.003.001.00-1.00--------------1.00-------
............AGATGAGGAGCTGGCCCAACCA.............................................................................................................................................................2213.003.002.00-1.00----------------------
..................................................................................TTGGAAGAAGCTGGAGACCAGGAT.....................................................................................2413.0011.001.00--1.00----1.00----------------
........ATGCAGATGAGGAGCTGGCC...................................................................................................................................................................2013.003.00--1.001.001.00--------------------
.......................................................................................................................TTTGTCTCTTTTCTTGTTCCAGT.................................................2313.001.00--------1.00--1.00-------1.00-----
................GAGGAGCTGGCCCAACCA.............................................................................................................................................................1813.003.00-2.00-1.00---------------------
..............................ACCAGTTGGCAGGATGAT...............................................................................................................................................1812.002.00---2.00---------------------
.............GATGAGGAGCTGGCCCAA................................................................................................................................................................1812.002.001.001.00-----------------------
.TATGAAAATGCAGATGAGGAGCTGGCC...................................................................................................................................................................2712.002.002.00------------------------
......................................................................................................................................................................GTGGGACCCCAGCCGGGAAG.....2012.002.00-1.00--1.00--------------------
........ATGCAGATGAGGAGCTGGCCCAACCA.............................................................................................................................................................2612.002.002.00------------------------
..................................................................................TTGGAAGAAGCTGGAGACCAG........................................................................................2112.002.00----1.00-1.00------------------
......................................................................................................................................................................GTGGGACCCCAGCCGGGAAGCA...2211.001.001.00------------------------
...............................CCAGTTGGCAGGATGATGG.............................................................................................................................................1911.001.00-1.00-----------------------
...................................................................................TGGAAGAAGCTGGAGACTGGG.......................................................................................211.000.00-----------------------1.00-
.............GATGAGGAGCTGGCCCAACCATT...........................................................................................................................................................231.000.00-------1.00-----------------
..................................................................................TTGGAAGAAGCTGGAGACCAGGTT.....................................................................................2411.0010.00-----------1.00-------------
.......................................................................................................................TTTGTCTCTTTTCTTGTTCCAG..................................................2211.001.00---------1.00---------------
...........................CCAACCAGTTGGCAGGATGATGG.............................................................................................................................................2311.001.001.00------------------------
........ATGCAGATGAGGAGCTGGCCCAAC...............................................................................................................................................................2411.001.001.00------------------------
...................................................................................TGGAAGAAGCTGGAGAAT..........................................................................................181.000.00---------------------1.00---
.................................................................................CTTGGAAGAAGCTGGAGATG..........................................................................................201.000.00----------------1.00--------
...TGAAAATGCAGATGAGGAGCTGGCCCAA................................................................................................................................................................2811.001.001.00------------------------
..................................................................................TTGGAAGAAGCTGGAGACCAGGAG.....................................................................................2411.0011.00--------1.00----------------
..............................ACCAGTTGGCAGGATGATGGAA...........................................................................................................................................2211.001.00----1.00--------------------
.......AATGCAGATGAGGAGCTGGCCCAA................................................................................................................................................................2411.001.001.00------------------------
............AGATGAGGAGCTGGCCCAAC...............................................................................................................................................................2011.001.00----------1.00--------------
...............................CCAGTTGGCAGGATGATGGGTGTGTA......................................................................................................................................2611.001.00-------1.00-----------------
............................CAACCAGTTGGCAGGATGATGG.............................................................................................................................................2211.001.00---------1.00---------------
...........CAGATGAGGAGCTGGCTTT.................................................................................................................................................................191.000.00-1.00-----------------------
..................................................................................TTGGAAGAAGCTGGAGACCAGGAAA....................................................................................2511.001.00-1.00-----------------------
............AGATGAGGAGCTGGCCCAAGCA.............................................................................................................................................................221.000.00---1.00---------------------
................................................................................................................................................................................AGCCGGGAAGCATCCAAA181.000.00----------------------1.00--
........ATGCAGATGAGGAGCTGGCCCA.................................................................................................................................................................2211.001.001.00------------------------
.TATGAAAATGCAGATGAGGAGCTGG.....................................................................................................................................................................2511.001.00-1.00-----------------------
...................................TTGGCAGGATGATGGACT..........................................................................................................................................181.000.001.00------------------------
......................................GCAGGATGATGGGTGTGTATT....................................................................................................................................2111.001.00--1.00----------------------
..................................GTTGGCAGGATGATGGGTGTGTATTTGA.................................................................................................................................2811.001.00-1.00-----------------------
......AAATGCAGATGAGGAGCTGGCCCA.................................................................................................................................................................2411.001.00-1.00-----------------------
..........GCAGATGAGGAGCTGGCCCAA................................................................................................................................................................2111.001.00--1.00----------------------
....GAAAATGCAGATGAGGAGCTGGCCCAA................................................................................................................................................................2711.001.00-1.00-----------------------
........ATGCAGATGAGGAGCTGGCCCAA................................................................................................................................................................2311.001.00------1.00------------------
..............................................................................ACTCTTGGAAGAAGCTGGAGA............................................................................................2111.001.00-1.00-----------------------
.....................................................................................GAAGAAGCTGGAGACGGT........................................................................................181.000.00-------------1.00-----------
.....AAAATGCAGATGAGGAGCTT......................................................................................................................................................................201.000.00--1.00----------------------
...........................................................................................................................................................CATGGGTCTGCGTGGGT...................171.000.00--------------1.00----------
..............................ACCAGTTGGCAGGATGATGGA............................................................................................................................................2111.001.00-1.00-----------------------
..............ATGAGGAGCTGGCCCAACC..............................................................................................................................................................1911.001.00---1.00---------------------
..........GCAGATGAGGAGCTGGCCCAAC...............................................................................................................................................................2211.001.00-----1.00-------------------
............................CAACCAGTTGGCAGGATGATGGAT...........................................................................................................................................2411.001.001.00------------------------
..................................................................................TTGGAAGAAGCTGGAGACA..........................................................................................191.000.00---1.00---------------------
..................................................................................TTGGAAGAAGCTGGAGACCAGA.......................................................................................2211.002.00----------1.00--------------
..................................................................................TTGGAAGAAGCTGGAGACC..........................................................................................1911.001.00----1.00--------------------
..ATGAAAATGCAGATGAGGAGCTGGCC...................................................................................................................................................................2611.001.001.00------------------------
................................................................................TCTTGGAAGAAGCTGGAGACC..........................................................................................2111.001.00----------1.00--------------
.....AAAATGCAGATGAGGAGCTGG.....................................................................................................................................................................2111.001.00-1.00-----------------------
..............................ACCAGTTGGCAGGATGATGG.............................................................................................................................................2011.001.00-1.00-----------------------
..................................GTTGGCAGGATGATGGGTG..........................................................................................................................................1911.001.00----1.00--------------------
.................................AGTTGGCAGGATGATGGACT..........................................................................................................................................201.000.00--1.00----------------------
...........CAGATGAGGAGCTGGCTT..................................................................................................................................................................181.000.00--1.00----------------------
...........CAGATGAGGAGCTGGCCCAACCA.............................................................................................................................................................2311.001.00-1.00-----------------------
..................................................................................TTGGAAGAAGCTGGAGACCAGGAA.....................................................................................2411.001.00-1.00-----------------------
............AGATGAGGAGCTGGCCCATA...............................................................................................................................................................201.000.00-------1.00-----------------
..................................................................................TTGGAAGAAGCTGGAGACCAGGAAT....................................................................................2511.001.00------1.00------------------
......................................................................................AAGAAGCTGGAGACCTC........................................................................................171.000.00------------------1.00------
......AAATGCAGATGAGGAGCTGGCC...................................................................................................................................................................2211.001.001.00------------------------
...........CAGATGAGGAGCTGGCCT..................................................................................................................................................................181.000.00--1.00----------------------
..............ATGAGGAGCTGGCCCAAC...............................................................................................................................................................1811.001.001.00------------------------
..................................GTTGGCAGGATGATGGACTT.........................................................................................................................................201.000.00---1.00---------------------
...........CAGATGAGGAGCTGGCCCAA................................................................................................................................................................2011.001.00---1.00---------------------
..................................................................................TTGGAAGAAGCTGGAGACCAGGATTAT..................................................................................2711.0011.00----------1.00--------------
...................................................................................TGGAAGAAGCTGGAGAAGGA........................................................................................201.000.00-1.00-----------------------
.................................................................................CTTGGAAGAAGCTGGAGACC..........................................................................................2011.001.00-1.00-----------------------
.........TGCAGATGAGGAGCTGGCCCA.................................................................................................................................................................2111.001.00---1.00---------------------
........ATGCAGATGAGGAGCTGG.....................................................................................................................................................................1820.500.50----0.50--------------------
............................................................................................................................................................ATGGGTCTGCGTGGG....................1540.250.25------------------------0.25
...............................................................TGAGCGAGGGCTGT..................................................................................................................1490.110.11-------------0.11-----------

Antisense strand
TTATGAAAATGCAGATGAGGAGCTGGCCCAACCAGTTGGCAGGATGATGGGTGTGTATTTGAGTGAGCGAGGGCTGTCACTCTTGGAAGAAGCTGGAGACCAGGAAAAAAAGTGATATCTTTGTCTCTTTTCTTGTTCCAGACTTCCTGAGCCCCCATGGGTCTGCGTGGGACCCCAGCCGGGAAGCATCC
...................................................................................(((((.(((..((((((.((((............)))).))))))...))).)))))...................................................
.............................................................................78.............................................................141................................................
SizePerfect hitTotal NormPerfect NormSRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		mjLiverWT3()
Liver Data. (liver)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR553586(SRX182792)
source: Testis. (testes)		SRR037937(GSM510475)
293cand2. (cell line)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		mjTestesWT3()
Testes Data. (testes)
...............................................................................................................GTGATATCTTTGTCTCTTTTCTTGTTCCA................................................... 2911.001.00------------1.00------------
.................................................................................................................GATATCTTTGTCTCTTTTCTTGTTCCA................................................... 2711.001.00------------1.00------------
...........................................................................................................................TCTCTTTTCTTGTTCCAGACTTCCTG.......................................... 2611.001.00---------------1.00---------