ID: uc009ikc.3
GENE: Capn5(3)
chr7:105274903-105275152-


(1)
AGO.mut 		(1)
AGO1.ip 		(11)
AGO2.ip 		(1)
B-CELL 		(26)
BRAIN 		(2)
CELL-LINE 		(1)
DCR.mut 		(1)
DGCR8.mut 		(4)
EMBRYO 		(6)
ESC 		(1)
FIBROBLAST 		(2)
LIVER 		(6)
OTHER 		(2)
OTHER.mut 		(1)
PIWI.ip 		(1)
SKIN 		(1)
SPLEEN 		(6)
TESTES 		(2)
THYMUS 		(3)
TOTAL-RNA

Sense strand
AGCACAAGGGCCTCTGTGCTTTTCATACCCTTCCCTTCAGCCCTAACCAAACACTAACCTAATCTTGTCCTTATAGATGTGCTAGTTCTGGATATTGTCTGTCTGTGTATCCTACTGATCCTTTCGTGGTAGCCACTTGGAGATGGGATAGTCTCTGATGCGGGGCTGTTTATGCCCCATCTCCTCTTGTCTCCACACAGGTGGAAGAGAACCGCCAATACCGTATGCACAGCCTACAGCATAAGGCCGC
.............................................................................................................................((((.((.((...(((((((((((((((((......))))))))......)))))))))...)).))))))......................................................
.....................................................................................................................118...............................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR394083(GSM855969)
"background strain: C57BL6/SV129cell type: KR. (cell line)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR206941(GSM723282)
other. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		mjTestesWT1()
Testes Data. (testes)		SRR206942(GSM723283)
other. (brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR073955(GSM629281)
total RNA. (blood)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR206939(GSM723280)
other. (brain)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR306528(GSM750571)
19-24nt. (ago2 brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR206940(GSM723281)
other. (brain)		GSM314559(GSM314559)
ESC dgcr8 (454). (ESC)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
..........................................................................................................................TTCGTGGTAGCCACTTGGAGAT..........................................................................................................22118.0018.0018.00------------------------------------------------------------
...........................................................................................................................TCGTGGTAGCCACTTGGAGATG.........................................................................................................22111.0011.00-1.00--1.001.00-1.00------2.00----1.00---------1.00----------1.00-----1.00--------1.00-----
...................................................................................................................................................................................TCTCCTCTTGTCTCCACACAGT.................................................22110.003.00-2.00------2.00-------1.00-----1.00----------1.00-1.00-1.00------------1.00----------
...........................................................................................................................TCGTGGTAGCCACTTGGAGATGG........................................................................................................23110.0010.00-2.001.00--1.00-------------------1.00------1.00--------1.00--1.001.00-------1.00-------
..........................................................................................................................TTCGTGGTAGCCACTTGGAGATG.........................................................................................................2318.008.00-1.00-2.00---1.00----1.00------------1.00----1.00---------------------1.00--------
..........................................................................................................................TTCGTGGTAGCCACTTGGAG............................................................................................................2015.005.00----1.00----1.00------------1.001.00-------------------1.00-----------------
...........................................................................................................................TCGTGGTAGCCACTTGGAGAT..........................................................................................................2115.005.00----1.00----1.001.00----------1.00-----------------------------1.00---------
...........................................................................................................................TCGTGGTAGCCACTTGGAGA...........................................................................................................2014.004.00----------1.001.00-------1.00-1.00---------------------------------------
..................................................................................................................................................................................ATCTCCTCTTGTCTCCACACAGT.................................................2314.001.00-1.00---------------------1.00----------1.00--------------1.00-----------
...........................................................................................................................TCGTGGTAGCCACTTGGAGATA.........................................................................................................2213.005.00-2.00---------1.00-------------------------------------------------
...........................................................................................................................TCGTGGTAGCCACTTGGAGATGGT.......................................................................................................2413.0010.00-1.00----------------------1.00----------------------1.00-------------
...................................................................................................................................................................................TCTCCTCTTGTCTCCACACAG..................................................2113.003.00--------1.00-------------------1.00--1.00-----------------------------
............................................................................................................................CGTGGTAGCCACTTGGAGATGG........................................................................................................2213.003.00---1.00--1.00-----------------------------------------------1.00------
.......................................................................................CTGGATATTGTCTGTCTGTGTATCCTACTGATCCTTTCGTGGTAGCCACTTGGAGATGGGATAGTCTCTGATGCGGGGCTGTTTATG............................................................................8712.002.00--------------------2.00----------------------------------------
............................................................................................................................CGTGGTAGCCACTTGGAGATGGA.......................................................................................................2312.003.00------2.00------------------------------------------------------
...........................................................................................................................TCGTGGTAGCCACTTGGAGATGGA.......................................................................................................2412.0010.00--1.00---------------1.00------------------------------------------
...........................................................................................................................TCGTGGTAGCCACTTGGAG............................................................................................................1912.002.00----------1.00-----1.00--------------------------------------------
......................................................................................................................................................................................................AGGTGGAAGAGAACCG....................................1641.751.75---------------------------1.00------------------------------0.50-0.25
...................................................................................................................................................................................TCTCCTCTTGTCTCCACACAGA.................................................2211.003.00---------1.00---------------------------------------------------
............................................................................................................................CGTGGTAGCCACTTGGAGATG.........................................................................................................2111.001.00-----------------1.00-------------------------------------------
...........................................................................................................................TCGTGGTAGCCACTTGGAGATT.........................................................................................................2211.005.00--1.00----------------------------------------------------------
..........................................................................................................................TTCGTGGTAGCCACTTGGAGATGA........................................................................................................2411.008.00--------------------------1.00----------------------------------
.........................................................................................................................................................................................................TGGAAGAGAACCGCCAATA..............................1911.001.00---------------------------------------1.00---------------------
..........................................................................................................................TTCGTGGTAGCCACTTGGAGA...........................................................................................................2111.001.00------------------------------------------------1.00------------
............................................................................................................................CGTGGTAGCCACTTGGAGATGGG.......................................................................................................2311.001.00-----1.00-------------------------------------------------------
..........................................................................................................................TTCGTGGTAGCCACTTGGAGATT.........................................................................................................2311.0018.00--------------------------------------1.00----------------------
..................................................................................................................................................................................ATCTCCTCTTGTCTCCACACAAT.................................................231.000.00-1.00-----------------------------------------------------------
..............................................................................................................................TGGTAGCCACTTGGAGATGGGAT.....................................................................................................2311.001.00-1.00-----------------------------------------------------------
.........................................................................................................................TTTCGTGGTAGCCACTTGGA.............................................................................................................2011.001.00--1.00----------------------------------------------------------
..................................................................................................................................................................................ATCTCCTCTTGTCTCCACACAG..................................................2211.001.00-----------1.00-------------------------------------------------
..........................................................................................................................TTCGTGGTAGCCACTTGGAGATGTAT......................................................................................................2611.008.00------------------1.00------------------------------------------
...................................................................................................................................................................................TCTCCTCTTGTCTCCACACAGTT................................................2311.003.00-1.00-----------------------------------------------------------
...........................................................................................................................TCGTGGTAGCCACTTGGAGATGT........................................................................................................2311.0011.00--1.00----------------------------------------------------------
...........................................................................................................................TCGTGGTAGCCACTTGGAAA...........................................................................................................201.000.00---------------------------------------------------------1.00---
..........................................................................................................................TTCGTGGTAGCCACTTGGAGATGGTT......................................................................................................261.000.00----1.00--------------------------------------------------------
.....................................................................................................................................................................................TCCTCTTGTCTCCACACAGT.................................................201.000.00------------1.00------------------------------------------------
..........................................................................................................................TTCGTGGTAGCCACTTGGAGATA.........................................................................................................2311.0018.00------------------------------------------1.00------------------
............................................................................................................................CGTGGTAGCCACTTGGAGATGGGTT.....................................................................................................2511.001.00---1.00---------------------------------------------------------
...........................................................................................................................................................................................................................ACCGTATGCACAGCCTACAGCAT........2311.001.00-------1.00-----------------------------------------------------
..........................................................................................................................TTCGTGGTAGCCACTTGGAA............................................................................................................201.000.00-----------------1.00-------------------------------------------
...........................................................................................................................TCGTGGTAGCCACTTGGAGATGGTAA.....................................................................................................2611.0010.00------------------------------------1.00------------------------
...................................................................................................................................................................................TCTCCTCTTGTCTCCACACAT..................................................211.000.00-1.00-----------------------------------------------------------

Antisense strand
AGCACAAGGGCCTCTGTGCTTTTCATACCCTTCCCTTCAGCCCTAACCAAACACTAACCTAATCTTGTCCTTATAGATGTGCTAGTTCTGGATATTGTCTGTCTGTGTATCCTACTGATCCTTTCGTGGTAGCCACTTGGAGATGGGATAGTCTCTGATGCGGGGCTGTTTATGCCCCATCTCCTCTTGTCTCCACACAGGTGGAAGAGAACCGCCAATACCGTATGCACAGCCTACAGCATAAGGCCGC
.............................................................................................................................((((.((.((...(((((((((((((((((......))))))))......)))))))))...)).))))))......................................................
.....................................................................................................................118...............................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR394083(GSM855969)
"background strain: C57BL6/SV129cell type: KR. (cell line)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR206941(GSM723282)
other. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		mjTestesWT1()
Testes Data. (testes)		SRR206942(GSM723283)
other. (brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR073955(GSM629281)
total RNA. (blood)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR206939(GSM723280)
other. (brain)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR306528(GSM750571)
19-24nt. (ago2 brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR206940(GSM723281)
other. (brain)		GSM314559(GSM314559)
ESC dgcr8 (454). (ESC)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
............TCTGTGCTTTTCATACTGTT.......................................................................................................................................................................................................................... 202.000.00---------------2.00---------------------------------------------
.....................................................................................................................................................................................................................GCCAATACCGTATGCACAGCCTACAGCA......... 2812.002.00-------------2.00-----------------------------------------------
........................................CCCTAACCAAACACTGAAC............................................................................................................................................................................................... 191.000.00------------------------1.00------------------------------------
.................................................................................................................ACTGATCCTTTCGTGCCTT...................................................................................................................... 191.000.00--------------------------------------------------------1.00----
.......................................................AACCTAATCTTGTCCTT.................................................................................................................................................................................. 1720.500.50--------------------------0.50----------------------------------
..........................ACCCTTCCCTTCAGCCCT.............................................................................................................................................................................................................. 1820.500.50-----------------------------------------------------------0.50-