ID: uc009hzo.10
GENE: Sema4b(11)
chr7:87365168-87365377+


(1)
AGO2.ip 		(2)
B-CELL 		(7)
BRAIN 		(5)
EMBRYO 		(6)
ESC 		(1)
LIVER 		(1)
LYMPH 		(7)
OTHER 		(1)
OTHER.ip 		(3)
OTHER.mut 		(5)
PIWI.ip 		(2)
PIWI.mut 		(1)
SPLEEN 		(24)
TESTES 		(1)
THYMUS

Sense strand
CCGTGTGCCTGGCCTGCACAGCACTTATGATGTCCTATTTCTGGGCACTGGTGAGTGTCTGCAGCCCTGCAGAATTGAGTTAAGGAGGGCAATACATGCATGGCTGGTAGATCGTGGGCGGTGGGCTCCACCACGGCCTGAGTCGTGACCATGCTTGCAGGTGATGGCCGCCTGCACAAAGCAGTGACCCTGAGCTCCAGAGTCCACATC
................................................................................................((((.(((((((.(((..(((((.((((......)))).))))).)))...)))).)))))))...................................................
.......................................................................................88......................................................................160................................................
SizePerfect hitTotal NormPerfect NormSRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		mjTestesWT4()
Testes Data. (testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		mjTestesWT3()
Testes Data. (testes)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR073955(GSM629281)
total RNA. (blood)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR028731(GSM400968)
Mili-wt-associated. (testes)		SRR525237(SRA056111/SRX170313)
Mus musculus domesticus miRNA sequencing. (Blood)		GSM509276(GSM509276)
small RNA cloning by length. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
............................................................................................TACATGCATGGCTGGTAGATCGTGG.............................................................................................25124.0024.005.004.00-5.001.001.001.001.00-2.00-2.00---------------------------------1.001.00--------
............................................................................................TACATGCATGGCTGGTAGATCGTGGG............................................................................................26111.0011.005.002.00-1.001.001.001.00------------------------------------------------
........................................................................................................TGGTAGATCGTGGGCGGTG.......................................................................................19110.0010.00--10.00----------------------------------------------------
...............................................................................................ATGCATGGCTGGTAGATCGTGGGCGGT........................................................................................2714.004.002.00-----1.00--------1.00---------------------------------------
.............................................................................................ACATGCATGGCTGGTAGATCGTGGG............................................................................................2513.003.00-1.00---------1.00-------------------------------------1.00-----
........................................................................................................................................CCTGAGTCGTGACCATGCTTGCAG..................................................2413.003.00--------3.00----------------------------------------------
.............................................................................................ACATGCATGGCTGGTAGATCGTGG.............................................................................................2413.003.001.00------1.00-----------------------------------1.00-----------
..........................................................................................................................................TGAGTCGTGACCATGCTTGCAG..................................................2212.002.00-----------------------------------------1.00------1.00------
..............................................................................................CATGCATGGCTGGTAGATCGTGGG............................................................................................2412.002.00-------1.00------------------------1.00----------------------
.............................................................................................ACATGCATGGCTGGTAGATCGT...............................................................................................2212.002.00-------------------2.00-----------------------------------
.............................................................................................ACATGCATGGCTGGTAGATCGTGGGC...........................................................................................2612.002.001.00------1.00-----------------------------------------------
............................................................................................TACATGCATGGCTGGTAGATCGTGGGCGGTGGGCTCCACCACGGCCTGAGTCGTGACCATGCTTGCAGT.................................................692.000.00------------2.00------------------------------------------
...................................................................................................................GGGCGGTGGGCTCCACCACGGCCTGAGTCGTGA..............................................................3312.002.00----------------------2.00--------------------------------
................................................................................................................................................................................CAAAGCAGTGACCCTGAGCTCC............2212.002.00--------------------2.00----------------------------------
...............................................................................................ATGCATGGCTGGTAGATCGTGGGCGG.........................................................................................2612.002.00----1.00-1.00------------------------------------------------
.....................................................................................................................................................................................CAGTGACCCTGAGCTCCAGAG........2112.002.00--------------1.00------------------------------------1.00---
.............................................................................................ACATGCATGGCTGGTAGATCGTG..............................................................................................2312.002.00----1.00------------------------------------------1.00-------
............................................................................................TACATGCATGGCTGGTAGA...................................................................................................1912.002.00------------------1.00------1.00-----------------------------
..................................................GTGAGTGTCTGCAGCCCTGCAGA.........................................................................................................................................2312.002.00---------------------2.00---------------------------------
...........................................................................................................................................GAGTCGTGACCATGCTTGCAG..................................................2112.002.00----------2.00--------------------------------------------
............................................................................................TACATGCATGGCTGGTAGATCGTGGT............................................................................................2612.0024.001.00-----------------1.00------------------------------------
..........................ATGATGTCCTATTTCTGGGCACT.................................................................................................................................................................2311.001.00------------------------------1.00------------------------
.......................................................................................................................................................................CCGCCTGCACAAAGCAGT.........................1811.001.00-----------------------1.00-------------------------------
....................................................................................................TGGCTGGTAGATCGTGGGCGGAATT.....................................................................................251.000.00------------------------1.00------------------------------
..............................................................................................CATGCATGGCTGGTAGATCGTGGGCGG.........................................................................................2711.001.00---------------1.00---------------------------------------
.................................................................................................................................................................................AAAGCAGTGACCCTGAGCTCCAGAG........2511.001.00---------1.00---------------------------------------------
.................................................................................................GCATGGCTGGTAGATCGTGGGCGG.........................................................................................2411.001.00----------------------------------------------------1.00--
......................................................................AGAATTGAGTTAAGGTAG..........................................................................................................................181.000.00-----------------------------------------------------1.00-
...................................................................TGCAGAATTGAGTTAATCGA...........................................................................................................................201.000.00-------------------------------1.00-----------------------
..............................................................................................CATGCATGGCTGGTAGATCGT...............................................................................................2111.001.00------------------------1.00------------------------------
...........................................................................................................................................................................................CCCTGAGCTCCAGAGTCCAC...2011.001.00-----------------------1.00-------------------------------
.........TGGCCTGCACAGCACTTATGATGTCCTA.............................................................................................................................................................................2811.001.00---1.00---------------------------------------------------
................................................................................................TGCATGGCTGGTAGATCGTGGGCGG.........................................................................................2511.001.00-1.00-----------------------------------------------------
....................................................................................................................................................................................GCAGTGACCCTGAGCTCCAGAGTCCAC...2711.001.00-1.00-----------------------------------------------------
...............................................................................................ATGCATGGCTGGTAGATCGTGGGCG..........................................................................................2511.001.00---------------------------1.00---------------------------
.......................................................................................................................................................................................GTGACCCTGAGCTCCAGAGTC......2111.001.00----------1.00--------------------------------------------
..............................................................................................CATGCATGGCTGGTAGATCGTG..............................................................................................2211.001.00---------------------------------------1.00---------------
..................................................................................................................................................................................AAGCAGTGACCCTGAGCTCCAGAGTCCA....2811.001.00--------------------------------------------1.00----------
............................................................................................TACATGCATGGCTGGTAGATCGTG..............................................................................................2411.001.00-----1.00-------------------------------------------------
..........................................................................................................................................TGAGTCGTGACCATGCTTGCAGT.................................................2311.002.00--------------------------------------1.00----------------
.............................................................................................ACATGCATGGCTGGTAGATCGTGGT............................................................................................2511.003.001.00------------------------------------------------------
...................................................................TGCAGAATTGAGTTAACCGA...........................................................................................................................201.000.00-------------1.00-----------------------------------------
................................TCCTATTTCTGGGCACTGGTGATGGC........................................................................................................................................................261.000.00--------------------------------------------------1.00----
..............................................................AGCCCTGCAGAATTGAGTTAAGGAGGGCAATACATGCATGGCTGGTAGATCGTGGGCG..........................................................................................5811.001.00------------1.00------------------------------------------
............................................................................................TACATGCATGGCTGGTAGATCGTGA.............................................................................................2511.001.00-----------------1.00-------------------------------------
...............................................................................................ATGCATGGCTGGTAGATCGTGGGCGGTG.......................................................................................2811.001.001.00------------------------------------------------------
.....................................................................................................................................CGGCCTGAGTCGTGACCATGCTTGCAG..................................................2711.001.00-----------------1.00-------------------------------------
........CTGGCCTGCACAGCACTTATGATGTCCTA.............................................................................................................................................................................2911.001.00-1.00-----------------------------------------------------
........................................................................................................TGGTAGATCGTGGGCGGTGGG.....................................................................................2111.001.00----------------------------1.00--------------------------
.............................................................................................................................................................................GCACAAAGCAGTGACAGGT..................191.000.00----------------------------------------1.00--------------
................................................................................................TGCATGGCTGGTAGATCGTGGGCGGT........................................................................................2611.001.00------------------------------------------1.00------------
................................................................................................................................................................................CAAAGCAGTGACCCTGAGCTCCAG..........2411.001.00-----1.00-------------------------------------------------
...........................................................................................ATACATGCATGGCTGGTAGATCGTGGG............................................................................................2711.001.00---1.00---------------------------------------------------
..........................................................................................................................................TGAGTCGTGACCATGCTTGC....................................................2011.001.00-----------------------------1.00-------------------------
.................................................................................................GCATGGCTGGTAGATCGTGGGCGGT........................................................................................2511.001.00------------------------------------1.00------------------
.......................................................................................................................................................................................GTGACCCTGAGCTCCAGAGT.......2011.001.00----1.00--------------------------------------------------
........................................................................................................................................CCTGAGTCGTGACCATGCTTGCAGA.................................................2511.003.00----------------------------------1.00--------------------
........................................................................................................................................CCTGAGTCGTGACCATGCTTGC....................................................2211.001.00--------------------------1.00----------------------------
............................................................................................TACATGCATGGCTGGTGGT...................................................................................................191.000.00-------------1.00-----------------------------------------
...........................................................................................ATACATGCATGGCTGGGAGG...................................................................................................201.000.00-1.00-----------------------------------------------------
..............................................................................................CATGCATGGCTGGTAGATCGTGGGC...........................................................................................2511.001.00---1.00---------------------------------------------------
.............................................................................................ACATGCATGGCTGGTAGATCGTGGGCGA.........................................................................................281.000.00--------------1.00----------------------------------------
.........................TATGATGTCCTATTTCTGGGCACTGGT..............................................................................................................................................................2711.001.00-------------------------------------1.00-----------------
.............................................................................................ACATGCATGGCTGGTAGATCGTGA.............................................................................................2411.002.00-----------------------------------1.00-------------------
..................................................................................................................TGGGCGGTGGGCTCC.................................................................................1530.330.33------------------------------------------------------0.33

Antisense strand
CCGTGTGCCTGGCCTGCACAGCACTTATGATGTCCTATTTCTGGGCACTGGTGAGTGTCTGCAGCCCTGCAGAATTGAGTTAAGGAGGGCAATACATGCATGGCTGGTAGATCGTGGGCGGTGGGCTCCACCACGGCCTGAGTCGTGACCATGCTTGCAGGTGATGGCCGCCTGCACAAAGCAGTGACCCTGAGCTCCAGAGTCCACATC
................................................................................................((((.(((((((.(((..(((((.((((......)))).))))).)))...)))).)))))))...................................................
.......................................................................................88......................................................................160................................................
SizePerfect hitTotal NormPerfect NormSRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		mjTestesWT4()
Testes Data. (testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		mjTestesWT3()
Testes Data. (testes)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR073955(GSM629281)
total RNA. (blood)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR028731(GSM400968)
Mili-wt-associated. (testes)		SRR525237(SRA056111/SRX170313)
Mus musculus domesticus miRNA sequencing. (Blood)		GSM509276(GSM509276)
small RNA cloning by length. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
........................................................................................................................................................................................TGACCCTGAGCTCCATTGC....... 192.000.00----------------2.00--------------------------------------
...........................................................................................ATACATGCATGGCTGAGG..................................................................................................... 181.000.00---------------------------------1.00---------------------