ID: uc009gzz.10
GENE: Ptpn5(10)
chr7:54346155-54346404-


(5)
AGO2.ip 		(24)
BRAIN 		(2)
CELL-LINE 		(1)
DCR.mut 		(2)
DGCR8.mut 		(2)
EMBRYO 		(1)
ESC 		(4)
LYMPH 		(2)
OTHER 		(1)
PIWI.ip 		(5)
SPLEEN 		(1)
TESTES 		(1)
TOTAL-RNA

Sense strand
GAGGGGCTGTCTCAGTTGCCTGTGATTAGTTTTTCTCCTGAAGAGTGCTGAGGCCTCCTCTGGGTACACCACCCTTCCCTCCACTGCCCAGTCTGAGAGGCTTGGGAGCCTCCTTGGGGGCTGAAGGTGAGCTCTGCAGGGCAATATAGGGGCAAAGGGCTGCAGCCGTACACTCAGTCTGCGCCTCCCAACTGCCCCAGCTTGCCTGTGGGGTGCTCTGGCTCAGTGGCCATGGCCACTCCTGGCTGCA
....................................................................................................................................................((((((..((((.((((....((.....))))))))))......))))))....................................................
.............................................................................................................................................142.......................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR038744(GSM527279)
small RNA-Seq. (brain)		SRR206941(GSM723282)
other. (brain)		SRR206942(GSM723283)
other. (brain)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR206940(GSM723281)
other. (brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR060845(GSM561991)
total RNA. (brain)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR206939(GSM723280)
other. (brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR059773(GSM562835)
CD4_Dicer. (spleen)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		GSM510453(GSM510453)
newborn_rep9. (total RNA)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)
..................................................................................................................................................TAGGGGCAAAGGGCTGCAG.....................................................................................1917.007.002.001.001.00---1.00------1.00------------------------1.00---
..................................................................................................................................................TAGGGGCAAAGGGCTGCAGC....................................................................................2017.007.00--1.00---1.00-1.002.00-------1.00-------------------1.00----
..................................................................................................................................................TAGGGGCAAAGGGCTGCAGCCGT.................................................................................2316.006.00---1.00---------1.00----1.00-1.00--1.00-----1.00------------
..................................................................................................................................................TAGGGGCAAAGGGCTGCAGCCG..................................................................................2215.005.00----2.001.00---------------------1.001.00-------------
..................................................................................................................................................................................CTGCGCCTCCCAACTGCCCCAGA.................................................233.000.002.00--------1.00--------------------------------
..................................................................................................................................................TAGGGGCAAAGGGCTGCA......................................................................................1813.003.00-1.00-1.00------------1.00-------------------------
..................................................................................................................................................TAGGGGCAAAGGGCTGCAGCC...................................................................................2113.003.001.00--1.00--------------1.00-----------------------
..................................................................................................................................................TAGGGGCAAAGGGCTGCAGCAAT.................................................................................2313.007.00-2.00---1.00------------------------------------
..................................................................................................................................................TAGGGGCAAAGGGCTGCAGA....................................................................................2013.007.001.00---1.001.00------------------------------------
..................................................................................................................................................TAGGGGCAAAGGGCTGCAGCCGA.................................................................................2312.005.00------1.00----1.00------------------------------
...................................................................................................................................................AGGGGCAAAGGGCTGCAGCC...................................................................................2012.002.00-------1.00----1.00-----------------------------
.........................................................................................................................TGAAGGTGAGCTCTGCAGGGCAATA........................................................................................................2512.002.00--2.00---------------------------------------
..................................................................................................................................................TAGGGGCAAAGGGCTGCAGCCA..................................................................................2212.003.00----------------------1.00------------1.00------
...................................................................................................................................................AGGGGCAAAGGGCTGCAGC....................................................................................1911.001.00--------------------------1.00---------------
................TGCCTGTGATTAGTTTTTCTC.....................................................................................................................................................................................................................2111.001.00------------------------------------1.00-----
......................................................................................CCCAGTCTGAGAGGCCCT..................................................................................................................................................181.000.00--------------------------------1.00---------
..................................................................................................................................................TAGGGGCAAAGGGCTGCAGCCGTAT...............................................................................251.000.00--------1.00---------------------------------
.................................................................................................................................................................................TCTGCGCCTCCCAACTGCCCCAGA.................................................241.000.00-----------------1.00------------------------
..................................................................................................................................................TAGGGGCAAAGGGCTGCAGTTA..................................................................................2211.007.00----------------1.00-------------------------
..................................................................................................................................................TAGGGGCAAAGGGCTGCATT....................................................................................2011.003.00---1.00--------------------------------------
...................................................................................................................................................AGGGGCAAAGGGCTGCAGCCG..................................................................................2111.001.00-------1.00----------------------------------
..................................................................................................................................................TAGGGGCAAAGGGCTGCAGCAG..................................................................................2211.007.00-----1.00------------------------------------
..................................................................................................................................................TAGGGGCAAAGGGCTGCAGCCGTAC...............................................................................2511.001.00-----------1.00------------------------------
....................................................................................................................................................GGGGCAAAGGGCTGCAGCC...................................................................................1911.001.00------------1.00-----------------------------
...........................................................................................................................................................AGGGCTGCAGCCGTACATAT...........................................................................201.000.00----------1.00-------------------------------
...................................................................................................................................................AGGGGCAAAGGGCTGCAG.....................................................................................1811.001.00----1.00-------------------------------------
..................................................................................................................................................TAGGGGCAAAGGGCTGCAGCAAG.................................................................................2311.007.00---------------1.00--------------------------
...................................................................................................................................................AGGGGCAAAGGGCTGCAGCCGA.................................................................................2211.001.00-------1.00----------------------------------
..................................................................................................................................................TAGGGGCAAAGGGCTGCAGT....................................................................................2011.007.00---------------1.00--------------------------
..................................................................................................................................................TAGGGGCAAAGGGCTGCAGCCGAA................................................................................2411.005.00------------------------------1.00-----------
.AGGGGCTGTCTCAGTTGC.......................................................................................................................................................................................................................................1811.001.00-1.00----------------------------------------
................................................................................................................................................................................................................TGGGGTGCTCTGGCTCAGTGG.....................2111.001.00------1.00-----------------------------------
.................................................................................................................................................................................TCTGCGCCTCCCAACTGCCCCAGT.................................................241.000.00---------------------------------------1.00--
...................................................................................................................................................AGGGGCAAAGGGCTGCAGCCAA.................................................................................2211.002.00--------------1.00---------------------------
.................................................................................................................................................ATAGGGGCAAAGGGCTGCAGCCAAT................................................................................251.000.00--------------1.00---------------------------
.......................................................................................................GGGAGCCTCCTTGGGGTT.................................................................................................................................181.000.00-------------------------1.00----------------
...................................................................................................................................................AGGGGCAAAGGGCTGCAT.....................................................................................181.000.00----------------------------------1.00-------
..................................................................................................................................................TAGGGGCAAAGGGCTGCAGCCGAG................................................................................2411.005.00--------1.00---------------------------------
..................................................................................................................................................TAGGGGCAAAGGGCTGCAGCCATAT...............................................................................2511.003.00---------------------1.00--------------------
................................................................................................................................................................TGCAGCCGTACAC.............................................................................1360.170.17-----------------------------------------0.17

Antisense strand
GAGGGGCTGTCTCAGTTGCCTGTGATTAGTTTTTCTCCTGAAGAGTGCTGAGGCCTCCTCTGGGTACACCACCCTTCCCTCCACTGCCCAGTCTGAGAGGCTTGGGAGCCTCCTTGGGGGCTGAAGGTGAGCTCTGCAGGGCAATATAGGGGCAAAGGGCTGCAGCCGTACACTCAGTCTGCGCCTCCCAACTGCCCCAGCTTGCCTGTGGGGTGCTCTGGCTCAGTGGCCATGGCCACTCCTGGCTGCA
....................................................................................................................................................((((((..((((.((((....((.....))))))))))......))))))....................................................
.............................................................................................................................................142.......................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR038744(GSM527279)
small RNA-Seq. (brain)		SRR206941(GSM723282)
other. (brain)		SRR206942(GSM723283)
other. (brain)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR206940(GSM723281)
other. (brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR060845(GSM561991)
total RNA. (brain)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR206939(GSM723280)
other. (brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR059773(GSM562835)
CD4_Dicer. (spleen)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		GSM510453(GSM510453)
newborn_rep9. (total RNA)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)
......................................................................ACCCTTCCCTCCACTGCCCAGTCTGA.......................................................................................................................................................... 2611.001.00---------------------------------1.00--------
...............TTGCCTGTGATTAGTAGGA........................................................................................................................................................................................................................ 191.000.00----------------------------------------1.00-
........................................................................................CAGTCTGAGAGGCTTTTG................................................................................................................................................ 181.000.00-------------------------------1.00----------
....................................................................................................................................................................................................CCAGCTTGCCTGTGGTCT.................................... 181.000.00------------------------1.00-----------------
.............................................................................................................................................................................TCAGTCTGCGCCTCCCATA.......................................................... 191.000.00----------1.00-------------------------------
.......................................................................................................................................................................................CCTCCCAACTGCCCCAGAG................................................ 191.000.00-------------------1.00----------------------