ID: uc009fyh.7
GENE: Supt5h(14)
chr7:29102288-29102461-


(1)
AGO1.ip 		(3)
AGO2.ip 		(3)
B-CELL 		(15)
BRAIN 		(5)
CELL-LINE 		(2)
DCR.mut 		(1)
DGCR8.mut 		(9)
EMBRYO 		(10)
ESC 		(3)
FIBROBLAST 		(3)
HEART 		(1)
KIDNEY 		(3)
LIVER 		(1)
LUNG 		(2)
LYMPH 		(14)
OTHER 		(7)
OTHER.mut 		(8)
PIWI.ip 		(2)
PIWI.mut 		(1)
SKIN 		(3)
SPLEEN 		(29)
TESTES 		(2)
THYMUS 		(4)
TOTAL-RNA

Sense strand
CAATGAACTCATAGGCCAGACTGTGCGTATCTCCCAGGGACCCTACAAAGGTGAGCCATGGCGTGTGCAGAGGCAGGGGCTGTGGTGGAGGAAGTCCCATACTTCTGACTGCCATTCCTTACAGGCTACATTGGTGTGGTGAAGGATGCCACAGAGTCCACGGCCAGAGTAGAA
..................................................(((((..((((((.((.((((((..((((((...........))))))...))))))))))))))..)))))....................................................
..................................................51.......................................................................124................................................
SizePerfect hitTotal NormPerfect NormSRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR037938(GSM510476)
293Red. (cell line)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR553582(SRX182788)
source: Brain. (Brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		mjTestesWT1()
Testes Data. (testes)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR037935(GSM510473)
293cand3. (cell line)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR206940(GSM723281)
other. (brain)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR553586(SRX182792)
source: Testis. (testes)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		GSM261958(GSM261958)
oocytesmallRNA-24to30. (oocyte)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR095855BC2(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR525237(SRA056111/SRX170313)
Mus musculus domesticus miRNA sequencing. (Blood)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR206942(GSM723283)
other. (brain)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		mjTestesWT2()
Testes Data. (testes)		SRR060845(GSM561991)
total RNA. (brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR039610(GSM527274)
small RNA-Seq. (brain)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		GSM361408(GSM361408)
WholeCerebellum_P6_wt_rep1. (brain)
.......................................................................................................TCTGACTGCCATTCCTTACAGA.................................................22142.0011.005.00-3.004.005.002.00------6.00--------3.002.001.00----1.00----2.00------2.00------------1.00---1.00---1.00-------------1.00----------1.00-----1.00---------------
.......................................................................................................TCTGACTGCCATTCCTTACAGT.................................................22132.0011.002.00-1.003.001.004.00------------1.00------1.00--3.002.004.00-----------1.001.00--1.00--------------1.00----------1.00-----1.001.00-----1.00-1.00-------1.00------------
..................................................GTGAGCCATGGCGTGTGCAGAGGCAG..................................................................................................26118.0018.00-4.00-------1.00-1.00-------2.001.00------------------------1.00--1.00---1.00--1.00----1.00--------1.00---1.00------------------------1.00-------1.00-
.......................................................................................................TCTGACTGCCATTCCTTACAG..................................................21111.0011.001.00---4.001.00----------1.00-----1.001.001.00----1.00------------------------------------------------------------------------------
..................................................GTGAGCCATGGCGTGTGCAGAGG.....................................................................................................2318.008.00-2.00--------2.00-----------------------------1.00-------------1.00-1.001.00--------------------------------------------------
....GAACTCATAGGCCAGACTGTGCGT..................................................................................................................................................2418.008.004.00-3.00-------------------------------------------------------1.00-------------------------------------------------
..................................................GTGAGCCATGGCGTGTGCAGAGGCAGG.................................................................................................2717.007.00-----------5.00---1.00---1.00----------------------------------------------------------------------------------------
................................CCCAGGGACCCTACAAAG............................................................................................................................1816.006.00-----------------1.00--------1.00-----------------------------------------1.00--1.00----------1.00-----------------1.00-------
..................................................................................................................................TTGGTGTGGTGAAGGATGCCACA.....................2315.005.00--------5.00---------------------------------------------------------------------------------------------------
....GAACTCATAGGCCAGACT........................................................................................................................................................1815.005.002.00-2.00--1.00------------------------------------------------------------------------------------------------------
.................................CCAGGGACCCTACAAAG............................................................................................................................1725.005.00--------1.50--------2.00-------------------------------1.00---------------0.50------------------------------------------
........................................................................GCAGGGGCTGTGGTGGAGGAAGTCCC............................................................................2615.005.00-------------5.00----------------------------------------------------------------------------------------------
............................................................GCGTGTGCAGAGGCAGGGGCTGTGG.........................................................................................2514.004.00----------------------1.00-----------3.00-------------------------------------------------------------------------
..................................................GTGAGCCATGGCGTGTGCAGAGGC....................................................................................................2414.004.00-2.00-------1.00----------------------------1.00---------------------------------------------------------------------
..................................................GTGAGCCATGGCGTGTGCAGAGGCAGGGGCTGTGGTGGAGGAAGTCCCATACTTCTGACTGCCATTCCTTACAG..................................................7414.004.00-------4.00----------------------------------------------------------------------------------------------------
..................................................GTGAGCCATGGCGTGTGCAGAGGCA...................................................................................................2514.004.00---------1.00----------1.00-----------------1.00---------------------------------------------------------------1.00-----
...................................................TGAGCCATGGCGTGTGCAGAGGCAGG.................................................................................................2614.004.00---------------1.00----1.00------------------1.00--------1.00-----------------------------------------------------------
..................................................GTGAGCCATGGCGTGTGCAGAGGCAGT.................................................................................................2714.0018.00-1.00-------1.00---------1.00------------------------------1.00---------------------------------------------------------
..................................................GTGAGCCATGGCGTGTGCAGAGA.....................................................................................................2313.001.00----------3.00-------------------------------------------------------------------------------------------------
.......................................................................................................TCTGACTGCCATTCCTTACA...................................................2013.003.00--1.001.00---------------------------------------------1.00----------------------------------------------------------
............AGGCCAGACTGTGCGTATCTCCCA..........................................................................................................................................2413.003.00----------------3.00-------------------------------------------------------------------------------------------
............................ATCTCCCAGGGACCCTACAAAGGCT.........................................................................................................................253.000.002.00---------------------------------------------1.00-------------------------------------------------------------
................................................................GTGCAGAGGCAGGGGCTGTGG.........................................................................................2113.003.00---------------------------2.00---------------------------1.00----------------------------------------------------
......................GTGCGTATCTCCCAGGGACCCTACAAAG............................................................................................................................2813.003.00-------------------------------------3.00----------------------------------------------------------------------
.AATGAACTCATAGGCCAGACTGT......................................................................................................................................................2313.003.001.00----1.00---------------------------------------------1.00--------------------------------------------------------
...................................................TGAGCCATGGCGTGTGCAGAGGC....................................................................................................2313.003.00-3.00----------------------------------------------------------------------------------------------------------
...............................................................................................CCCATACTTCTGACTGCCATTCC........................................................2313.003.00-----------------------------------3.00------------------------------------------------------------------------
...TGAACTCATAGGCCAGACTGTGCGTA.................................................................................................................................................2613.003.00--------------1.001.00-----------------------1.00--------------------------------------------------------------------
..............................................................GTGTGCAGAGGCAGGGGCTGTGG.........................................................................................2313.003.00-------------------------1.00---------------1.00---------------------1.00--------------------------------------------
.................................................................................................................................ATTGGTGTGGTGAAGGATG..........................1912.002.00-----------------------------------------------------------1.00--------------------1.00---------------------------
...............................................................................................................................ACATTGGTGTGGTGAAGGAT...........................2012.002.001.00----1.00------------------------------------------------------------------------------------------------------
...................................................................CAGAGGCAGGGGCTGTGG.........................................................................................1842.002.00---------------------------2.00--------------------------------------------------------------------------------
...............................................................TGTGCAGAGGCAGGGGCTGTGG.........................................................................................2212.002.00-------------------------1.00---------------1.00------------------------------------------------------------------
..................................................................................................................................................TGCCACAGAGTCCACGGCCA........2012.002.00-------------------------------2.00----------------------------------------------------------------------------
..................................................GTGAGCCATGGCGTGTGCAG........................................................................................................2012.002.00-------------------------------------------------------------------------------------------------------1.001.00---
..................................................GTGAGCCATGGCGTGTGCAGAGGCAT..................................................................................................2612.004.00-1.00------------1.00---------------------------------------------------------------------------------------------
.......CTCATAGGCCAGACTTAGG....................................................................................................................................................192.000.00-----------------------------------------------2.00------------------------------------------------------------
........................GCGTATCTCCCAGGGACCCTACAAAGGCTA........................................................................................................................301.000.00-------------------------------------------------------------------------------------------------1.00----------
...........................................................................................AAGTCCCATACTTCTGACTGCC.............................................................2211.001.00------------------------------------1.00-----------------------------------------------------------------------
...................................................TGAGCCATGGCGTGTGCAGAGGCAG..................................................................................................2511.001.00---------------1.00--------------------------------------------------------------------------------------------
....................................................................AGAGGCAGGGGCTGTGGTGGAGGAAGTCCCATACTTCTGACTGCCATTCCTTACAGTT................................................581.000.00-------1.00----------------------------------------------------------------------------------------------------
........................................................................GCAGGGGCTGTGGTGGAGGAAGTCCA............................................................................261.000.00-------------1.00----------------------------------------------------------------------------------------------
...........TAGGCCAGACTGTGCGTATCTCCCAGGGACC....................................................................................................................................3111.001.00-------------------------------------------1.00----------------------------------------------------------------
.....................TGTGCGTATCTCCCAGGGACCCTAT................................................................................................................................251.000.00----------------------------------------------------------------------1.00-------------------------------------
....................................................................................................................................GGTGTGGTGAAGGATGCCACAGA...................2311.001.001.00-----------------------------------------------------------------------------------------------------------
.............................TCTCCCAGGGACCCTACAAAGGC..........................................................................................................................231.000.00-------------------------------1.00----------------------------------------------------------------------------
.....AACTCATAGGCCAGACTGT......................................................................................................................................................1911.001.00----------------------------------------------------------1.00-------------------------------------------------
.....................................................................................................................................................CACAGAGTCCACGGCCAGA......1911.001.00--------------------------1.00---------------------------------------------------------------------------------
..................................................GTGAGCCATGGCGTGTGCAGAGGCAGGGGCTGTGGTGGAGGAAGTCCCATACTTCTGACTGCCATTCCTTACAGT.................................................7511.004.00-------1.00----------------------------------------------------------------------------------------------------
..............................................................................................................................TACATTGGTGTGGTGAAGGATGCC........................2411.001.00--------------------1.00---------------------------------------------------------------------------------------
.................AGACTGTGCGTATCTCCCAGGGA......................................................................................................................................2311.001.00-----------------------------------------------------------1.00------------------------------------------------
..................................................GTGAGCCATGGCGTGTGCAGAGGCAGGGGCTGTGGTGGAGGAAGTCCCATACTTCTGACTGCCATTCCTTA.....................................................7111.001.00-------1.00----------------------------------------------------------------------------------------------------
.....AACTCATAGGCCAGACTGTGCGT..................................................................................................................................................2311.001.00------------------1.00-----------------------------------------------------------------------------------------
.....AACTCATAGGCCAGACGGCT.....................................................................................................................................................201.000.00--------------------------------------------1.00---------------------------------------------------------------
.AATGAACTCATAGGCCAGACT........................................................................................................................................................2111.001.001.00-----------------------------------------------------------------------------------------------------------
....................................................................................................................................GGTGTGGTGAAGGATGCCAC......................2011.001.001.00-----------------------------------------------------------------------------------------------------------
......................................................................AGGCAGGGGCTGTGGTGGAGGAAG................................................................................2411.001.00-------------------------1.00----------------------------------------------------------------------------------
.......................................................................................................TCTGACTGCCATTCCTTACAGC.................................................2211.0011.00----1.00-------------------------------------------------------------------------------------------------------
.......................TGCGTATCTCCCAGGGACCCTACAAAGGC..........................................................................................................................291.000.00---------------------------------------1.00--------------------------------------------------------------------
.......................................................................GGCAGGGGCTGTGGTGGAGGA..................................................................................2111.001.00-----------------------1.00------------------------------------------------------------------------------------
.......................................................................................................TCTGACTGCCATTCCTTACAGAT................................................2311.0011.00---1.00--------------------------------------------------------------------------------------------------------
....................................................................................................................................GGTGTGGTGAAGGATGCCACAGAGTC................2611.001.00-1.00----------------------------------------------------------------------------------------------------------
..........................................................TGGCGTGTGCAGAGGCAGGGGCT.............................................................................................2311.001.00---------------------------------------------------------------------------------------------------------1.00--
................CAGACTGTGCGTATCTCCCAGGGA......................................................................................................................................2411.001.00-----------------------------1.00------------------------------------------------------------------------------
..................................CAGGGACCCTACAAAGGCT.........................................................................................................................191.000.00--------------------------------1.00---------------------------------------------------------------------------
.....................................................................................................................................GTGTGGTGAAGGATGCCACAGAGTCC...............2611.001.00------------------------------------------------------1.00-----------------------------------------------------
.................AGACTGTGCGTATCTCCCAGGGACCCT..................................................................................................................................2711.001.00---------1.00--------------------------------------------------------------------------------------------------
...TGAACTCATAGGCCAGACTGT......................................................................................................................................................2111.001.00-------------------------------------------------------------------------------------------1.00----------------
.................................CCAGGGACCCTACAAAGGTGAGCC.....................................................................................................................2411.001.00-----------------1.00------------------------------------------------------------------------------------------
....................................................................AGAGGCAGGGGCTGTGTCT.......................................................................................191.000.00----------------------------------------------------------------1.00-------------------------------------------
..................................................GTGAGCCATGGCGTGTGCAGAGTCA...................................................................................................2511.001.00-----------------------------------------------------------------------------------1.00------------------------
..............................................................................................TCCCATACTTCTGACTGCCA............................................................2011.001.00-------------------------------------------------------------------1.00----------------------------------------
........TCATAGGCCAGACTGTGCGTATCTCCC...........................................................................................................................................2711.001.00----------------------------------------------------------------------------------------------1.00-------------
.................................................................................................CATACTTCTGACTGCCATTCCT.......................................................2211.001.001.00-----------------------------------------------------------------------------------------------------------
..............................................................................................TCCCATACTTCTGACTGCCATTCT........................................................241.000.00--1.00---------------------------------------------------------------------------------------------------------
..................................................GTGAGCCATGGCGTGTGCAGA.......................................................................................................2111.001.00--------------------------------------------------------1.00---------------------------------------------------
............AGGCCAGACTGTGCGTATCTCCC...........................................................................................................................................2311.001.00---------------------------------------------------1.00--------------------------------------------------------
...TGAACTCATAGGCCAGAC.........................................................................................................................................................1811.001.00------------------------1.00-----------------------------------------------------------------------------------
............................................................................................................................................GAAGGATGCCACAGAGTCCACGGCCA........2611.001.00----------------------------------------------------1.00-------------------------------------------------------
..................................................GTGAGCCATGGCGTGTGCAGAG......................................................................................................2211.001.00-----------------------------------------------------------------------------------------------------1.00------
............................................................GCGTGTGCAGAGGCAGGGG...............................................................................................1911.001.00------------------------------------1.00-----------------------------------------------------------------------
........................................................................GCAGGGGCTGTGGTGGAGGAAGGC..............................................................................241.000.00------------------------------------1.00-----------------------------------------------------------------------
......ACTCATAGGCCAGACTGTGCGTATCTCCC...........................................................................................................................................2911.001.00---------------1.00--------------------------------------------------------------------------------------------
..............................................................................................TCCCATACTTCTGACTGCCAT...........................................................2111.001.00--------------------------------------------------------------1.00---------------------------------------------
....................................................................................................ACTTCTGACTGCCATTCCTTACAG..................................................2411.001.00---------------------1.00--------------------------------------------------------------------------------------
.........................................................................CAGGGGCTGTGGTGGAT....................................................................................171.000.00-----------------------------------------1.00------------------------------------------------------------------
...............................TCCCAGGGACCCTACAAAGGCT.........................................................................................................................221.000.00--------------------------------1.00---------------------------------------------------------------------------
....GAACTCATAGGCCAGACTGT......................................................................................................................................................2011.001.00--1.00---------------------------------------------------------------------------------------------------------
...................................................................CAGAGGCAGGGGCTGTGGT........................................................................................1911.001.00-----------------1.00------------------------------------------------------------------------------------------
.......................................................................................................TCTGACTGCCATTCCTTACAGAA................................................2311.0011.00---1.00--------------------------------------------------------------------------------------------------------
.....AACTCATAGGCCAGACTGCTAC...................................................................................................................................................221.000.00---------------------------------1.00--------------------------------------------------------------------------
................CAGACTGTGCGTATCTCCCAGGGACCC...................................................................................................................................2711.001.00--------------1.00---------------------------------------------------------------------------------------------
.......................TGCGTATCTCCCAGGGACCCTACAAAGT...........................................................................................................................2811.001.00--------------------------------------1.00---------------------------------------------------------------------
........................................................................................................CTGACTGCCATTCCTTACAG..................................................2011.001.00--------------------------------------------1.00---------------------------------------------------------------
................................CCCAGGGACCCTACAATT............................................................................................................................181.000.00--------------------------1.00---------------------------------------------------------------------------------
..............GCCAGACTGTGCGTATCTCCCA..........................................................................................................................................2211.001.00-----------------------------------------------------------------1.00------------------------------------------
..ATGAACTCATAGGCCAGACTGTGCG...................................................................................................................................................2511.001.00---------1.00--------------------------------------------------------------------------------------------------
............................ATCTCCCAGGGACCCTACAAAGGT..........................................................................................................................2411.001.001.00-----------------------------------------------------------------------------------------------------------
..............GCCAGACTGTGCGTATCTCCCAGGGACCC...................................................................................................................................2911.001.00---------------------------------------------1.00--------------------------------------------------------------
...TGAACTCATAGGCCAGA..........................................................................................................................................................1711.001.00-----------------------------------------------------1.00------------------------------------------------------
............................................................................................................................................................TCCACGGCCAGAGTAGAA1811.001.00----------------1.00-------------------------------------------------------------------------------------------
...........TAGGCCAGACTGTGCGTATCTCC............................................................................................................................................2311.001.00-----------------------------------------------------------------------------1.00------------------------------
.......................TGCGTATCTCCCAGGGACCCTACAAAG............................................................................................................................2711.001.00----------------------------------------------------------------------------------------1.00-------------------
..................................................GTGAGCCATGGCGTGT............................................................................................................1611.001.00------------------1.00-----------------------------------------------------------------------------------------
......................................................................................................................................TGTGGTGAAGGATGCCACAGAGT.................2311.001.00------------------1.00-----------------------------------------------------------------------------------------
.AATGAACTCATAGGCCAGACTGTGC....................................................................................................................................................2511.001.00----------------------------------------------------------------------------1.00-------------------------------
......................................................................................................TTCTGACTGCCATTCCTTACAGT.................................................231.000.00----------1.00-------------------------------------------------------------------------------------------------
...................................................................CAGAGGCAGGGGCTGTTG.........................................................................................181.000.00--------------------------------------------------------------1.00---------------------------------------------
..................................................GTGAGCCATGGCGTGTGCA.........................................................................................................1911.001.00------------------------------------------------------------1.00-----------------------------------------------
.AATGAACTCATAGGCCAGACTGTGCG...................................................................................................................................................2611.001.00--------------1.00---------------------------------------------------------------------------------------------
...............CCAGACTGTGCGTATCTCCCAGGG.......................................................................................................................................2411.001.00--------------1.00---------------------------------------------------------------------------------------------
....................................................................AGAGGCAGGGGCTGTGTTTT......................................................................................201.000.00------------------------------------------------------------------------------------------------1.00-----------
................CAGACTGTGCGTATCTCC............................................................................................................................................1811.001.00---------------------------------------------------------------1.00--------------------------------------------
...............CCAGACTGTGCGTATCTC.............................................................................................................................................1811.001.00---------------------------------------------------------------------------------------------------1.00--------
..................................................................................................................................TTGGTGTGGTGAAGGATGCCACAG....................2411.001.00------------------------------------------------------------------------------------------1.00-----------------
............................ATCTCCCAGGGACCCTACAAAGGC..........................................................................................................................241.000.00--------------------------1.00---------------------------------------------------------------------------------
..................GACTGTGCGTATCTCCCAGGGACCCTACA...............................................................................................................................2911.001.00------------------------------------------1.00-----------------------------------------------------------------
.......................................................................................................TCTGACTGCCATTCCTTACAGTT................................................2311.0011.00-----------------------1.00------------------------------------------------------------------------------------
...................................................................................................................................TGGTGTGGTGAAGGATG..........................1711.001.00---1.00--------------------------------------------------------------------------------------------------------
..ATGAACTCATAGGCC.............................................................................................................................................................1570.430.43-------------------0.14----------------------0.140.14----------------------------------------------------------------

Antisense strand
CAATGAACTCATAGGCCAGACTGTGCGTATCTCCCAGGGACCCTACAAAGGTGAGCCATGGCGTGTGCAGAGGCAGGGGCTGTGGTGGAGGAAGTCCCATACTTCTGACTGCCATTCCTTACAGGCTACATTGGTGTGGTGAAGGATGCCACAGAGTCCACGGCCAGAGTAGAA
..................................................(((((..((((((.((.((((((..((((((...........))))))...))))))))))))))..)))))....................................................
..................................................51.......................................................................124................................................
SizePerfect hitTotal NormPerfect NormSRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR037938(GSM510476)
293Red. (cell line)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR553582(SRX182788)
source: Brain. (Brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		mjTestesWT1()
Testes Data. (testes)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR037935(GSM510473)
293cand3. (cell line)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR206940(GSM723281)
other. (brain)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR553586(SRX182792)
source: Testis. (testes)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		GSM261958(GSM261958)
oocytesmallRNA-24to30. (oocyte)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR095855BC2(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR525237(SRA056111/SRX170313)
Mus musculus domesticus miRNA sequencing. (Blood)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR206942(GSM723283)
other. (brain)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		mjTestesWT2()
Testes Data. (testes)		SRR060845(GSM561991)
total RNA. (brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR039610(GSM527274)
small RNA-Seq. (brain)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		GSM361408(GSM361408)
WholeCerebellum_P6_wt_rep1. (brain)
......ACTCATAGGCCAGACTGAA..................................................................................................................................................... 199.000.00------9.00-----------------------------------------------------------------------------------------------------
.............................TCTCCCAGGGACCCTAAAA.............................................................................................................................. 191.000.00------------------------------------------------------------------------------------1.00-----------------------
................................................................................................CCATACTTCTGACTGCCATTCCTTA..................................................... 2511.001.00------------------------------------------------------------------1.00-----------------------------------------
...........................TATCTCCCAGGGACCCTTGA............................................................................................................................... 201.000.00--------------------------------1.00---------------------------------------------------------------------------
...TGAACTCATAGGCCAGCAGC....................................................................................................................................................... 201.000.00--------------------------------------------------------------------------1.00---------------------------------
......ACTCATAGGCCAGACGAC...................................................................................................................................................... 181.000.00---------------------------------------------------------------------------------------------1.00--------------
.....................................................................................................................................................CACAGAGTCCACGGCTGG....... 181.000.00-----------------------------------------------------------------------------------------1.00------------------
.....................................GGACCCTACAAAGGTG......................................................................................................................... 1611.001.00------------------1.00-----------------------------------------------------------------------------------------
................................................................GTGCAGAGGCAGGGGCCC............................................................................................ 181.000.00-----------------------------------------------------------------------------------------------------------1.00
...........................................................................................AAGTCCCATACTTCT.................................................................... 1570.570.57----------------------------------------------------------------0.57-------------------------------------------
...........................................TACAAAGGTGAGCCA.................................................................................................................... 1580.120.12----------------------------------------------------------------0.12-------------------------------------------
...............................................................................CTGTGGTGGAGGAAGT............................................................................... 1690.110.11------------------------------------------------------------------0.11-----------------------------------------
....................................................................................................................................GGTGTGGTGAAGGAT........................... 1590.110.11------------------------------------------0.11-----------------------------------------------------------------