ID: uc009ese.1
GENE: Tm7sf3(1)
chr6:146554763-146555012-


(1)
AGO.mut 		(2)
AGO1.ip 		(5)
AGO2.ip 		(1)
AGO3.ip 		(1)
B-CELL 		(22)
BRAIN 		(3)
CELL-LINE 		(2)
DCR.mut 		(4)
EMBRYO 		(7)
ESC 		(1)
FIBROBLAST 		(1)
HEART 		(1)
KIDNEY 		(3)
LIVER 		(3)
LYMPH 		(7)
OTHER 		(1)
OTHER.mut 		(2)
PANCREAS 		(1)
PIWI.mut 		(3)
SKIN 		(1)
SPLEEN 		(5)
TESTES 		(2)
THYMUS 		(1)
UTERUS

Sense strand
CGGGGGAGGGGAGGACAGGAACGAATATGATAAAAATACACTGTATGAAACTCTCACAGAATAAAAAGCAGACCCACTGTGGGCAAGGAAGGTTGTTTTACCATAGCCCTTGTCAGTGCTGAGACAGCACGAGGCCACCGAGAGAGCTGGAGGCTGCTCTCATTCCAAGGGTGATACCTGTCTCCTCTGCTCTCCCGCAGTTGAACATCCTGGCTTGTGGAGTCGTGGGCTCCTACTCCGTGGTGTTGGC
..........................................................................................................................................((.((((((.((((((.....(((((.....))))).....))))))...)))))).)).....................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR095853(SRX039174)
"sequencing of miRNA from wild type and disea. (heart)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR206939(GSM723280)
other. (brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR206941(GSM723282)
other. (brain)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (gland)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		GSM361395(GSM361395)
CGNP_P6_wt_rep2. (brain)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR206942(GSM723283)
other. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		GSM361402(GSM361402)
CGNP_P6_p53--_Ink4c--_rep5. (brain)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCT............................................................................................2219.009.001.001.00----------------2.00-------1.00--1.00--1.00---------1.00-------------------1.00----
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGC.............................................................................................2118.008.00-----2.00----------2.00--------1.00----1.00--1.00-1.00-------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCTA...........................................................................................2314.009.00----------------------2.00---1.00---------1.00------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCAA...........................................................................................2313.008.001.001.00-----1.00-----------------------------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCT...............................................................................................1913.003.00-3.00-----------------------------------------------------------------
..................................................................................................................................................................................TGTCTCCTCTGCTCTCCCGCAGT.................................................2313.003.00-------------------------------------------1.00------1.001.00---------------
................................................................................................................................................................................CCTGTCTCCTCTGCTCTCCCGC....................................................2213.003.00--1.00----------------1.00--------1.00--------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCTT...........................................................................................2313.009.00------------------------1.00------------1.00---------------1.00-------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTG..............................................................................................2012.002.00--------------------2.00----------------------------------------------
..................................................................................................................................................................................TGTCTCCTCTGCTCTCCCGCAG..................................................2212.002.00-----------------1.00-------------------------------1.00-----------------
..................................................................................................................................................................................................CCGCAGTTGAACAT..........................................1412.002.00---1.00-----------------------1.00---------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCTTT..........................................................................................2412.009.00----1.00--------------------------------------------------1.00-----------
..........................................................................................................................................CGAGAGAGCTGGAGGCTGCT............................................................................................2012.002.00---------------------------------------1.00-----------------1.00---------
...........................................................................................................................................GAGAGAGCTGGAGGCTGCT............................................................................................1912.002.00---------------2.00---------------------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCTATAA........................................................................................2612.009.00----1.00----1.00---------------------------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCTAT..........................................................................................2412.009.00---------1.00-----------1.00---------------------------------------------
.....................................................................................................................................................................................................................CTTGTGGAGTCGTGGGCTCCTAC..............2312.002.00-----------------------2.00-------------------------------------------
..........................................................................................................................GACAGCACGAGGCCACCAGCG...........................................................................................................212.000.00----------------------------------------------1.00--------------1.00-----
................................................................................................................................................................................CCTGTCTCCTCTGCTCTCCCGCAG..................................................2411.001.00----------1.00--------------------------------------------------------
........................................................................................................................................................................................................TTGAACATCCTGGCTTGTGGAGTCGTGGG.....................2911.001.00-----------------------------------------------1.00-------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGTA............................................................................................2211.002.00-----------------1.00-------------------------------------------------
.......................................................................................................................................CACCGAGAGAGCTGGAGGCTGCTAT..........................................................................................2511.001.00-------------1.00-----------------------------------------------------
..................................................................................................................................................................................TGTCTCCTCTGCTCTCCCGCAGA.................................................2311.002.00--------1.00----------------------------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGAAGA..........................................................................................2411.002.00------1.00------------------------------------------------------------
.........................................................................................................................................................................................................TGAACATCCTGGCTTGTGGAGTCGTGG......................2711.001.00-------------------1.00-----------------------------------------------
.......................................................................................................................................CACCGAGAGAGCTGGAGGCTGCT............................................................................................2311.001.00-------------1.00-----------------------------------------------------
.................................................................................................................................................GCTGGAGGCTGCTCTCATTCC....................................................................................2111.001.00----------1.00--------------------------------------------------------
........................................................................................................................................................................................................TTGAACATCCTGGCTTGTGG..............................2011.001.00--------1.00----------------------------------------------------------
.................................................................................................................................................................................CTGTCTCCTCTGCTCTCCCGCAG..................................................2311.001.00----------1.00--------------------------------------------------------
................................................................................................................................................................................CCTGTCTCCTCTGCTCTCCCGCAGT.................................................2511.001.00--1.00----------------------------------------------------------------
.......................................................................................................................................CACCGAGAGAGCTGGAGGCTGTAG...........................................................................................2411.001.00----------------------------------1.00--------------------------------
.................................................................................................................................................................................CTGTCTCCTCTGCTCTCCCGCTT..................................................2311.001.00----------------------------------------1.00--------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCG............................................................................................2211.008.00----------------------------------------------------------1.00--------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGTAA...........................................................................................2311.002.001.00------------------------------------------------------------------
......................................................................................................................................................................................................................TTGTGGAGTCGTGGGCT...................1711.001.00-----------1.00-------------------------------------------------------
.........................................................................................................................................CCGAGAGAGCTGGAGGCTGCTAA..........................................................................................231.000.00---------------------------------------------1.00---------------------
..............ACAGGAACGAATATGAAT..........................................................................................................................................................................................................................181.000.00--------------------------------------1.00----------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCTTA..........................................................................................2411.009.00------------1.00------------------------------------------------------
..................................................................................................................................................................................TGTCTCCTCTGCTCTCCCGCAGTT................................................2411.001.00----------------------------------------------------1.00--------------
........................................................................................................................................ACCGAGAGAGCTGGAGG.................................................................................................1711.001.00--1.00----------------------------------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCTTTAT........................................................................................2611.009.001.00------------------------------------------------------------------
.................................................................................................................................................................................................................CTGGCTTGTGGAGTCGTGGGCTCC.................2411.001.00------------------------------------------------1.00------------------
.................................................................................................................................................GCTGGAGGCTGCTCTTCC.......................................................................................181.000.00--------1.00----------------------------------------------------------
......................................................................................................................................................................................................................................TCCTACTCCGTGGTGTTGG.1911.001.00---------------------1.00---------------------------------------------
.....GAGGGGAGGACAGGACGC...................................................................................................................................................................................................................................181.000.00-----1.00-------------------------------------------------------------
...............................................................................................................................................................................ACCTGTCTCCTCTGCTCTCCCGCAT..................................................251.000.00--1.00----------------------------------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCAAT..........................................................................................2411.008.00--------------------------------------------1.00----------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCTCAA.........................................................................................251.000.00---------1.00---------------------------------------------------------
...............................................................................TGGGCAAGGAAGGTTTTC.........................................................................................................................................................181.000.00---1.00---------------------------------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCTAAA.........................................................................................2511.009.00------------------------1.00------------------------------------------
..........................................................................................................................................................................................................GAACATCCTGGCTTGTGGAGT...........................2111.001.00------1.00------------------------------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCTCAG.........................................................................................251.000.00-------------------------------1.00-----------------------------------
........................................................................................................................................................................................................................GTGGAGTCGTGGGC....................1431.001.00---------------------------0.67-------------------------------------0.33-
........................................................................................................................................ACCGAGAGAGCTGGAGGAC...............................................................................................1911.001.00-------1.00-----------------------------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTTT.............................................................................................2111.003.00-------1.00-----------------------------------------------------------
..............................................................................................................................................................................TACCTGTCTCCTCTGCTCTCCCGC....................................................2411.001.00-----------------------------------------1.00-------------------------
.......................................................................................................................................CACCGAGAGAGCTGGAGGCTG..............................................................................................2111.001.00-------------------------1.00-----------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGT.............................................................................................2111.002.00------1.00------------------------------------------------------------
.................................................................................................................................................................................CTGTCTCCTCTGCTCTCCCGCAGT.................................................2411.001.00------------1.00------------------------------------------------------
...................................ATACACTGTATGAAACTGTAT..................................................................................................................................................................................................211.000.00---1.00---------------------------------------------------------------
.............................................................................................................................................GAGAGCTGGAGGCTGTAG...........................................................................................181.000.00------------------------------------------------------1.00------------
............................................................................................................................................AGAGAGCTGGAGGCTGGGG...........................................................................................191.000.00--------------1.00----------------------------------------------------
............................................................................................................................................................................................................................AGTCGTGGGCTCCTACT.............1711.001.00------------------------------------------------------------1.00------
.................................................................................................................................................................................CTGTCTCCTCTGCTCTCCCGC....................................................2111.001.00--------------1.00----------------------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCTAAT.........................................................................................2511.009.001.00------------------------------------------------------------------
...............................................................................................................................................................................ACCTGTCTCCTCTGCTCTCCCGCT...................................................241.000.00-----------1.00-------------------------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCTTTAA........................................................................................2611.009.00----1.00--------------------------------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCTAA..........................................................................................2411.009.001.00------------------------------------------------------------------
........................................................................................................................................................................................................TTGAACATCCTGGCTT..................................1620.500.50-----------0.50-------------------------------------------------------
.............................................................................................................................................................................ATACCTGTCTCCTCTGCT...........................................................1820.500.50----------------------------------------------------------------0.50--
..........................ATGATAAAAATACACTGTAT............................................................................................................................................................................................................2050.200.20-----------------------------0.20-------------------------------------

Antisense strand
CGGGGGAGGGGAGGACAGGAACGAATATGATAAAAATACACTGTATGAAACTCTCACAGAATAAAAAGCAGACCCACTGTGGGCAAGGAAGGTTGTTTTACCATAGCCCTTGTCAGTGCTGAGACAGCACGAGGCCACCGAGAGAGCTGGAGGCTGCTCTCATTCCAAGGGTGATACCTGTCTCCTCTGCTCTCCCGCAGTTGAACATCCTGGCTTGTGGAGTCGTGGGCTCCTACTCCGTGGTGTTGGC
..........................................................................................................................................((.((((((.((((((.....(((((.....))))).....))))))...)))))).)).....................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR095853(SRX039174)
"sequencing of miRNA from wild type and disea. (heart)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR206939(GSM723280)
other. (brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR206941(GSM723282)
other. (brain)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (gland)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		GSM361395(GSM361395)
CGNP_P6_wt_rep2. (brain)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR206942(GSM723283)
other. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		GSM361402(GSM361402)
CGNP_P6_p53--_Ink4c--_rep5. (brain)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
..................................................................................................TACCATAGCCCTTGTCAG...................................................................................................................................... 1811.001.00--------------------------------------------------------1.00----------
.....................CGAATATGATAAAAATACACTGTATGAA......................................................................................................................................................................................................... 2811.001.00-----------------------------------------------------------1.00-------
...................................................................................................................................................................................................................................GGCTCCTACTCCGTGGT...... 1720.500.50---------------------------------------------------------------0.50---
....................................................................................................................................................................................................................................GCTCCTACTCCGTGGT...... 1620.500.50----------------------------0.50--------------------------------------