ID: uc009caf.6
GENE: Nod1(6)
chr6:54888166-54888415-


(1)
AGO1.ip 		(3)
AGO2.ip 		(2)
AGO3.ip 		(2)
B-CELL 		(8)
BRAIN 		(3)
CELL-LINE 		(1)
DCR.mut 		(3)
EMBRYO 		(3)
ESC 		(2)
FIBROBLAST 		(1)
KIDNEY 		(5)
LIVER 		(1)
LUNG 		(1)
LYMPH 		(7)
OTHER 		(1)
OTHER.mut 		(1)
OVARY 		(1)
PIWI.ip 		(4)
SKIN 		(5)
SPLEEN 		(6)
TESTES 		(1)
TOTAL-RNA 		(2)
UTERUS

Sense strand
TGGAGCCGTGTAAGGATTTAGTGCAGAAGGGAAGTCTGACTTTGGAGCCAGGCTGAGGCAGAGCCCAAACTCAGGGCTCTGTGAGTTCCCCCTTTAAACCTAGACAGTGGAAATCAGTAGGCGGCATGTACCCACTGTAGGAGAGAGTGTTCAAGCGACAGTGAAACTTATAAAGCCCCTGGCTGTGCTTTCTCTCCAAGTTTATACAACAACCAGATAACTGATATCGGAGCCAGGTATGTGGCCCAAA
...........................................................................................................................................(((((((......((((.(((((...................)))))))))))))))).....................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		mjLiverWT1()
Liver Data. (liver)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		mjTestesWT1()
Testes Data. (testes)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR073955(GSM629281)
total RNA. (blood)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR037911(GSM510448)
newborn_rep4. (total RNA)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR065046(SRR065046)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR014234(GSM319958)
Ovary total. (ovary)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
.........................................................................................................................................TAGGAGAGAGTGTTCAAGCGACAGT........................................................................................25118.0018.007.001.001.00-1.002.00-----1.001.00-1.00--1.00-------1.00-----1.00-----------------------
...................................................................................................................................................................................TGGCTGTGCTTTCTCTCCAAGT.................................................22114.0014.00-1.002.004.00----1.00---1.00-1.001.00-------------------1.00--1.00-------------1.00--
...................................................................................................................................................................................TGGCTGTGCTTTCTCTCCAAGA.................................................2218.005.003.002.00-1.00------1.00-----------------1.00--------------------------
.........................................................................................................................................TAGGAGAGAGTGTTCAAGCGA............................................................................................2116.006.00------1.00--------------------1.00---------1.00------1.00---1.00--1.00---
...................................................................................................................................................................................TGGCTGTGCTTTCTCTCCAAG..................................................2115.005.00-1.00---1.00------------------------------1.00----1.00----1.00--------
.........................................................................................................................................TAGGAGAGAGTGTTCAAGCGACAG.........................................................................................2415.005.00----1.00-----------------1.00-----------1.00--------1.00---1.00-------
...................................................................................................................................................................................TGGCTGTGCTTTCTCTCCAAGTA................................................2313.0014.00-1.001.00--------------------------1.00-------------------------
.........................................................................................................................................TAGGAGAGAGTGTTCAAGCGACA..........................................................................................2312.002.00------1.00------------------------------------------1.00-----
..............................GAAGTCTGACTTTGGAGAAGT.......................................................................................................................................................................................................212.000.00-------------2.00-----------------------------------------
..........................................................................................................................................AGGAGAGAGTGTTCAAGCGACAG.........................................................................................2312.002.00----2.00--------------------------------------------------
...................................................................................................................................................................................TGGCTGTGCTTTCTCTCCAAGTAT...............................................2412.0014.00-1.00------1.00----------------------------------------------
.............................GGAAGTCTGACTTTGGAATG.........................................................................................................................................................................................................202.000.00-------2.00-----------------------------------------------
.........................................................................................................................................TAGGAGAGAGTGTTCAAGCGACAGA........................................................................................2512.005.00--2.00----------------------------------------------------
...................................................................................................................................................................................TGGCTGTGCTTTCTCTCCCAGT.................................................222.000.00---------2.00---------------------------------------------
.........................................................................................................................................TAGGAGAGAGTGTTCAAGCGAC...........................................................................................2211.001.00-------------------1.00-----------------------------------
....................................................................................................................................................................................GGCTGTGCTTTCTCTCCAAA..................................................201.000.00-1.00-----------------------------------------------------
...................................................................................................................................................................................TGGCTGTGCTTTCTCTCCAAGAAT...............................................2411.005.00---------------------1.00---------------------------------
..........................................................................................................................................................................................................................AACTGATATCGGAGCCAGGT............2011.001.00------------------------1.00------------------------------
.........................................................................................CCCTTTAAACCTAGACCTA..............................................................................................................................................191.000.00------------------------------1.00------------------------
.................................................................................................................................ACCCACTGTAGGAGAGAGT......................................................................................................1911.001.00--------------------------------1.00----------------------
..................................................................................................................................................................................CTGGCTGTGCTTTCTCTCCATTTA................................................241.000.00------------------1.00------------------------------------
..........................................................................................................................................AGGAGAGAGTGTTCAAGCGA............................................................................................2011.001.00----------------1.00--------------------------------------
...................................................................................................................................................................................TGGCTGTGCTTTCTCTCCAAT..................................................211.000.00------------------------------------------1.00------------
.............................................................................................................GAAATCAGTAGGCGGCTGGG.........................................................................................................................201.000.00--------------------1.00----------------------------------
..........................................................................................................................................AGGAGAGAGTGTTCAAGCGACAGTG.......................................................................................2511.001.00------1.00------------------------------------------------
.........................................................................................................................................TAGGAGAGAGTGTTCAAGCGACAA.........................................................................................2411.002.00----------1.00--------------------------------------------
.........................................................................................................................................TAGGAGAGAGTGTTCAAGCGACT..........................................................................................2311.001.00----1.00--------------------------------------------------
.........................................................................................................................................TAGGAGAGAGTGTTCAAGCGACAGTA.......................................................................................2611.0018.00-----1.00-------------------------------------------------
...................................................................................................................................................................................TGGCTGTGCTTTCTCTCCAAGTT................................................2311.001.00-----------1.00-------------------------------------------
.........................................................................................................................................................AGCGACAGTGAAACTGAAA..............................................................................191.000.00--------------------------1.00----------------------------
........................................................................................................................................GTAGGAGAGAGTGTTCAAGCGA............................................................................................2211.001.00---------------------------------------1.00---------------
.........................................................................................................................................TAGGAGAGAGTGTTCAAGCG.............................................................................................2011.001.00---------------------------------------------1.00---------
...................................................................................................................................................................................TGGCTGTGCTTTCTCTCCCCGT.................................................221.000.00---------------1.00---------------------------------------
....................GTGCAGAAGGGAAGT.......................................................................................................................................................................................................................1580.120.12------------------------------------------------------0.12

Antisense strand
TGGAGCCGTGTAAGGATTTAGTGCAGAAGGGAAGTCTGACTTTGGAGCCAGGCTGAGGCAGAGCCCAAACTCAGGGCTCTGTGAGTTCCCCCTTTAAACCTAGACAGTGGAAATCAGTAGGCGGCATGTACCCACTGTAGGAGAGAGTGTTCAAGCGACAGTGAAACTTATAAAGCCCCTGGCTGTGCTTTCTCTCCAAGTTTATACAACAACCAGATAACTGATATCGGAGCCAGGTATGTGGCCCAAA
...........................................................................................................................................(((((((......((((.(((((...................)))))))))))))))).....................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		mjLiverWT1()
Liver Data. (liver)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		mjTestesWT1()
Testes Data. (testes)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR073955(GSM629281)
total RNA. (blood)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR037911(GSM510448)
newborn_rep4. (total RNA)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR065046(SRR065046)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR014234(GSM319958)
Ovary total. (ovary)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
.......................................................................................................................................................CAAGCGACAGTGAAACTTATATTA........................................................................... 241.000.00--------------------------------------------------1.00----
...................................................................................................CTAGACAGTGGAAATTCGG.................................................................................................................................... 191.000.00-----------------------1.00-------------------------------
.............................................AGCCAGGCTGAGGCAGAGCCCAAACTCA................................................................................................................................................................................. 2811.001.00----------------------------------------1.00--------------
..................................................................................GAGTTCCCCCTTTAATAT...................................................................................................................................................... 181.000.00-----------------------------------------------------1.00-
......................................................................................................................................................................................CTGTGCTTTCTCTCCAAC.................................................. 181.000.00---------------------------------1.00---------------------