ID: uc008zsv.14
GENE: Sfswap(14)
chr5:130075316-130075565+


(2)
AGO1.ip 		(14)
AGO2.ip 		(2)
AGO3.ip 		(3)
B-CELL 		(27)
BRAIN 		(2)
DCR.mut 		(2)
DGCR8.mut 		(5)
EMBRYO 		(5)
ESC 		(2)
FIBROBLAST 		(1)
HEART 		(1)
KIDNEY 		(3)
LIVER 		(6)
OTHER 		(4)
OTHER.mut 		(1)
PIWI.ip 		(1)
PIWI.mut 		(6)
SKIN 		(2)
SPLEEN 		(11)
TESTES 		(1)
THYMUS

Sense strand
GACTCAGGAGGTGGAAGAAGGAAGATCAGGAGTTTATTTATGGTCCTCCTCAGCTTCATAGTTAGTTCAAAGCCATCCCAGAATATATGTCTTCAAAAGACAAAAAAAGGTCTCGTGTGTGGAGGGGCCCCTTGACACCAATTGAGACTGCCCTCTTGTCGAGCACTCCATGTACCCTGACAAGAGCACTTCTCTTTCAGAAGTCCCCACGAGAAGAAGAAGAAACGGCGCTCACGGTCTCGCACCAAAG
...............................................................................................................................................((((.(((..((((((((...((.....))....)))))))))))..))))........................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		mjTestesWT3()
Testes Data. (testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		mjTestesWT1()
Testes Data. (testes)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR206940(GSM723281)
other. (brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR095853(SRX039174)
"sequencing of miRNA from wild type and disea. (heart)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR206942(GSM723283)
other. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		mjLiverWT3()
Liver Data. (liver)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR206941(GSM723282)
other. (brain)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
.............................................................................................................................................TTGAGACTGCCCTCTTGTCGAG.......................................................................................22199.0099.0030.004.003.00-6.004.003.003.004.00-2.003.003.002.00-2.003.00-2.002.002.002.002.003.001.00--1.00---2.00--1.001.00-1.00----1.00--1.00-1.00--1.00----1.00----------1.001.00-----
.............................................................................................................................................TTGAGACTGCCCTCTTGTCGAGC......................................................................................23178.0078.0055.001.003.005.00---1.00-6.00----5.00-1.00-----------1.00--------------------------------------------
............................................................................................................................................ATTGAGACTGCCCTCTTGTCGAG.......................................................................................23117.0017.007.00-1.00-1.00-----------1.004.00--------------1.00----1.00------------------------1.00----------
.............................................................................................................................................TTGAGACTGCCCTCTTGTCGAGA......................................................................................23115.0099.008.00-1.001.00------2.00--2.00-------------------------------------------------------1.00---
.............................................................................................................................................TTGAGACTGCCCTCTTGTCGAGT......................................................................................23112.0099.002.00--3.00-----------2.00--1.00-1.00--------------1.00------------1.00---------------1.00--------
.............................................................................................................................................TTGAGACTGCCCTCTTGTCGA........................................................................................2117.007.001.002.00--------1.00-1.001.00---------------------------------------------------1.00-------
.............................................................................................................................................TTGAGACTGCCCTCTTGTCG.........................................................................................2017.007.001.00-------2.00--1.00-------1.00-1.00-------1.00-------------------------------------------
............................................................................................................................................ATTGAGACTGCCCTCTTGTCGAGT......................................................................................2416.0017.00-----1.004.00--------1.00---------------------------------------------------------
............................................................................................................................................ATTGAGACTGCCCTCTTGTCG.........................................................................................2115.005.00-1.00---1.00------------------1.00-----1.00-1.00----------------------------------------
..............................................................................................................................................TGAGACTGCCCTCTTGTCGAGC......................................................................................2214.004.003.00------------------------1.00-----------------------------------------------
.................................................................................................................................................................................TGACAAGAGCACTTCTCTTTCA...................................................2214.004.00-1.00--------------------------------1.00--------1.00-------------------1.00---------
.................................................................................................................................................................................TGACAAGAGCACTTCTCTTTC....................................................2113.003.00-------------------------1.001.00-------------------------------1.00--------------
............................................................................................................................................ATTGAGACTGCCCTCTTGTCGA........................................................................................2213.003.00-2.00-----------------1.00-----------------------------------------------------
...........................................................................................................................................AATTGAGACTGCCCTCTTGTCG.........................................................................................2213.003.001.00----1.00------------------------1.00------------------------------------------
............................................................................................................................................ATTGAGACTGCCCTCTTGTCGAGA......................................................................................2412.0017.001.00---1.00--------------------------------------------------------------------
.............................................................................................................................................TTGAGACTGCCCTCTTGTCGAGCACT...................................................................................2612.002.00------------------1.00-------------------------------------------------1.00----
............................................................................................................................................ATTGAGACTGCCCTCTTGTCGAGC......................................................................................2412.002.001.00-------------------------------------------------------1.00----------------
..........................................................................................................................................CAATTGAGACTGCCCTCTTTTCG.........................................................................................231.000.00--------------------------1.00----------------------------------------------
............................................................................................................................................ATTGAGACTGCCCTCTTGTCGTG.......................................................................................2311.005.00-----------1.00-------------------------------------------------------------
................................................................................................................................................................................................................................ACGGCGCTCACGGTCTCGCA......2011.001.00--------------------------------------------1.00----------------------------
.ACTCAGGAGGTGGAAGAAGGAAA..................................................................................................................................................................................................................................231.000.00-------------------------------------------------------------1.00-----------
..................................................................................................................................................................................GACAAGAGCACTTCTCTTTCAGA.................................................2311.001.00-----------------------------------------------------1.00-------------------
..............................................................................................................................................TGAGACTGCCCTCTTGTCGCGA......................................................................................221.000.001.00------------------------------------------------------------------------
...........................................................................TCCCAGAATATATGTCTTCAAAAGACAAAAA................................................................................................................................................3111.001.00-----------------------------1.00-------------------------------------------
............................................................................................................................................................................................................CCCCACGAGAAGAAGAAGAAACG.......................2311.001.00----------------------------1.00--------------------------------------------
........................................................................................................................................................................................................AAGTCCCCACGAGAAGAAGAAGAAAC........................2611.001.00---------------------------------------------------------1.00---------------
...........................................................................................................................................AATTGAGACTGCCCTCTTGTCGAG.......................................................................................2411.001.00-------1.00-----------------------------------------------------------------
..............................................................................................................................................................................................................................AAACGGCGCTCACGGTCTCGCAC.....2311.001.00----------------------------------------------------------------------1.00--
.................................................................................................................................................................................................................CGAGAAGAAGAAGAATTGG......................191.000.00------------------------------------------------------------1.00------------
...............................................................................................................................................................................................................CACGAGAAGAAGAAGCGG.........................181.000.00-----------------------------------------1.00-------------------------------
...........................................................................................................................................................................................................TCCCCACGAGAAGAAGAAGAAACGGCGCT..................2911.001.00---------------------------------------------------1.00---------------------
...................................................................................................................................................................................................................AGAAGAAGAAGAAACGAGTC...................201.000.00----------------------------------------1.00--------------------------------
...........................................................................................TTCAAAAGACAAAAAAAAAAG..........................................................................................................................................211.000.00-------1.00-----------------------------------------------------------------
...........................................................................................................................................AATTGAGACTGCCCTCTTGTCGT........................................................................................2311.003.00-----------------------------------------------------------1.00-------------
...............AGAAGGAAGATCAGGACTCA.......................................................................................................................................................................................................................201.000.00----------------------------------------------1.00--------------------------
.................................................................................................................................................................................TGACAAGAGCACTTCTCTTTCAG..................................................2311.001.00--1.00----------------------------------------------------------------------
.............................................................................................................................................TTGAGACTGCCCTCTTGTGG.........................................................................................201.000.00------------1.00------------------------------------------------------------
.............................................................................................................................................TTGAGACTGCCCTCTTGTCGAGTT.....................................................................................2411.0099.001.00------------------------------------------------------------------------
..............................................................................................................................................TGAGACTGCCCTCTTGTCGAGCT.....................................................................................2311.004.001.00------------------------------------------------------------------------
..............................................................................................................................................TGAGACTGCCCTCTTGTCGAG.......................................................................................2111.001.00-----------------1.00-------------------------------------------------------
...........................................................AGTTAGTTCAAAGCCATCCCAGAAT......................................................................................................................................................................2511.001.00---------------------------1.00---------------------------------------------
.............................................................................................................................................TTGAGACTGCCCTCTTGTCTAGC......................................................................................231.000.00----------------------------------------------------1.00--------------------
.............................................................................................................................................TTGAGACTGCCCTCTTGTCGAGCT.....................................................................................2411.0078.001.00------------------------------------------------------------------------
............................................................................................................................................ATTGAGACTGCCCTCTTGTCGCGT......................................................................................2411.005.00----------------------1.00--------------------------------------------------
.................................................................................................................................................................................TGACAAGAGCACTTCTCTTT.....................................................2011.001.00------------------------------------1.00------------------------------------
..........................................................................................................................................CAATTGAGACTGCCCTCTTGTCGT........................................................................................241.000.00--------------------------------------1.00----------------------------------
............................................................................................TCAAAAGACAAAAAAAG.............................................................................................................................................1780.380.38-----------------------------------------------------------------------0.38-

Antisense strand
GACTCAGGAGGTGGAAGAAGGAAGATCAGGAGTTTATTTATGGTCCTCCTCAGCTTCATAGTTAGTTCAAAGCCATCCCAGAATATATGTCTTCAAAAGACAAAAAAAGGTCTCGTGTGTGGAGGGGCCCCTTGACACCAATTGAGACTGCCCTCTTGTCGAGCACTCCATGTACCCTGACAAGAGCACTTCTCTTTCAGAAGTCCCCACGAGAAGAAGAAGAAACGGCGCTCACGGTCTCGCACCAAAG
...............................................................................................................................................((((.(((..((((((((...((.....))....)))))))))))..))))........................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		mjTestesWT3()
Testes Data. (testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		mjTestesWT1()
Testes Data. (testes)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR206940(GSM723281)
other. (brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR095853(SRX039174)
"sequencing of miRNA from wild type and disea. (heart)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR206942(GSM723283)
other. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		mjLiverWT3()
Liver Data. (liver)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR206941(GSM723282)
other. (brain)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
..........................................................................................................................................................................TGTACCCTGACAAGAGAC.............................................................. 182.000.00---------------------------------2.00---------------------------------------
.............................................................................................................................................................................................................................................TCTCGCACCAAAG 1361.501.50--------------------------------------0.331.17---------------------------------
..........................................................................................................................................................................................................................................CGGTCTCGCACCAA.. 1421.001.00------------------------------------1.00------------------------------------
....................................................................AAAGCCATCCCAGAATACC................................................................................................................................................................... 191.000.00-------------------------------------------------1.00-----------------------
..........................................GTCCTCCTCAGCTTCATGTA............................................................................................................................................................................................ 201.000.00------------------------------------------------------1.00------------------
..................................................................TCAAAGCCATCCCAGAA....................................................................................................................................................................... 1730.330.33------------------------------------------------------------------------0.33