ID: uc008zos.26
GENE: Hip1r(27)
chr5:124451052-124451264+


(1)
AGO.mut 		(1)
AGO1.ip 		(1)
AGO2.ip 		(1)
AGO3.ip 		(6)
B-CELL 		(6)
BRAIN 		(1)
CELL-LINE 		(1)
DCR.mut 		(2)
EMBRYO 		(2)
ESC 		(1)
KIDNEY 		(5)
LIVER 		(4)
OTHER 		(1)
OTHER.mut 		(1)
OVARY 		(2)
PIWI.ip 		(1)
PIWI.mut 		(2)
SKIN 		(5)
SPLEEN 		(5)
TESTES 		(2)
TOTAL-RNA 		(1)
UTERUS

Sense strand
GGCCTCATCTCAGCCTCTAAGGCAGTGGGCTGGGGAGCCACACAGCTGGTGTATGTCCACCCAGGTGTGGGTGGGGTGGGCACGGTGCTGAGGTTGGCTGTGGGGGCTTGCCAGACTGTTCATGATGTGGAAACCCAGACTCTTGGTTGGCCCGGCCCCACAGGGAGTCAGCTGACAAGGTTGTGCTTCACATGGGCAAATACGAGGAACTCA
.................................................................................................(((((((((((.((((((((((((((...)))))....)))..))).))).)))))....))))))..................................................
.............................................................................................94...................................................................163................................................
SizePerfect hitTotal NormPerfect NormSRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		mjLiverWT1()
Liver Data. (liver)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
..............................................................................................................................................TTGGTTGGCCCGGCCCCACAGT.................................................22119.002.002.003.001.003.002.001.001.00----1.00-----1.00--------1.00---1.00-1.00-1.00--------
..............................................................................................................................................TTGGTTGGCCCGGCCCCACAGA.................................................2213.002.00------------1.00--------1.00-------------1.00-------
..............................................................................................................................................TTGGTTGGCCCGGCCCCACAGTA................................................2313.002.001.00-1.00---------------1.00------------------------
..............................................................................................................................................TTGGTTGGCCCGGCCCCACAG..................................................2112.002.00--1.00-----------1.00----------------------------
..............................................................................................................................................TTGGTTGGCCCGGCCCCACAGC.................................................2212.002.00---------------1.00----1.00----------------------
..................................................................................................TGTGGGGGCTTGCCAGACTGTTCAT..........................................................................................2511.001.00----------------1.00--------------------------
................................................................................................................AGACTGTTCATGATGTGGAAACCCAGACTC.......................................................................3011.001.00-----------------------------1.00-------------
......................CAGTGGGCTGGGGAGCCACACAGCTGGT...................................................................................................................................................................2811.001.00-------------------1.00-----------------------
................................................................................................................................................................................................TGGGCAAATACGAGGGA....171.000.00----------------------------1.00--------------
...................AGGCAGTGGGCTGGGGAGCCACACAG........................................................................................................................................................................2611.001.00-------1.00-----------------------------------
..............................................................................................................................................TTGGTTGGCCCGGCCCCACAGAAA...............................................2411.002.00-------------------------1.00-----------------
..................................................................................................TGTGGGGGCTTGCCAGACTGTTCATGA........................................................................................2711.001.00-------------1.00-----------------------------
................................................................................................................................................................................AAGGTTGTGCTTCACATGGGCAAATA...........2611.001.001.00------------------------------------------
............................................................................................................................................................................TGACAAGGTTGTGCTTCACATGGGCAA..............2711.001.00--------------------------------------1.00----
.....................................................................................TGCTGAGGTTGGCTGTGGGGGCTTGCCAGACTGTTCATGATGTGGAAACCCAGACTCTTGGTTGGCCCGGCCCCACAG..................................................7811.001.00---------------------------------1.00---------
..............................................................................................................................................TTGGTTGGCCCGGCCCCACAGTT................................................2311.002.00------1.00------------------------------------
........................................................................................................................................................................................GCTTCACATGGGCAAGAA...........181.000.00---------1.00---------------------------------
..............................................................................................................................................................................ACAAGGTTGTGCTTCACATGGGCAAAT............2711.001.00----------1.00--------------------------------
......................................................................................................................................CCAGACTCTTGGTTGGCCCGGCCCCACAG..................................................2911.001.00-------------------------------1.00-----------
...............TCTAAGGCAGTGGGCTGGGGA.................................................................................................................................................................................2111.001.00-----1.00-------------------------------------
..............................................................................................................................................TTGGTTGGCCCGGCCCCACAGTTT...............................................2411.002.00---------------------------------------1.00---
.................TAAGGCAGTGGGCTGAGGT.................................................................................................................................................................................191.000.00--------1.00----------------------------------
..................AAGGCAGTGGGCTGGGGAGCCACA...........................................................................................................................................................................2411.001.00------------------------------------1.00------
..............................................................................................................................................TTGGTTGGCCCGGCCCCACAGAAT...............................................2411.002.00-------------------------------------1.00-----
........CTCAGCCTCTAAGGCAGTGG.........................................................................................................................................................................................2020.500.50-----------------------------------------0.50-
.................TAAGGCAGTGGGCTGGGG..................................................................................................................................................................................1820.500.50-------0.50-----------------------------------
..................AAGGCAGTGGGCTGGG...................................................................................................................................................................................1630.330.33----------------------------------------0.33--

Antisense strand
GGCCTCATCTCAGCCTCTAAGGCAGTGGGCTGGGGAGCCACACAGCTGGTGTATGTCCACCCAGGTGTGGGTGGGGTGGGCACGGTGCTGAGGTTGGCTGTGGGGGCTTGCCAGACTGTTCATGATGTGGAAACCCAGACTCTTGGTTGGCCCGGCCCCACAGGGAGTCAGCTGACAAGGTTGTGCTTCACATGGGCAAATACGAGGAACTCA
.................................................................................................(((((((((((.((((((((((((((...)))))....)))..))).))).)))))....))))))..................................................
.............................................................................................94...................................................................163................................................
SizePerfect hitTotal NormPerfect NormSRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		mjLiverWT1()
Liver Data. (liver)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
................................................................................................................................GGAAACCCAGACTCTTCCA.................................................................. 191.000.00----------------------1.00--------------------
..................................................................................................................................................TTGGCCCGGCCCCACAGGA................................................ 191.000.00-----------------------1.00-------------------
...................................................................................................GTGGGGGCTTGCCAGACTGTTCATGA........................................................................................ 2611.001.00------------------------1.00------------------
.............................................................................................................GCCAGACTGTTCATGATGTGGAAACCCA............................................................................ 2811.001.00---------------------------1.00---------------
................................................................................................................................GGAAACCCAGACTCTT..................................................................... 1670.140.14------------------------------------------0.14