ID: uc008zos.2
GENE: Hip1r(3)
chr5:124439693-124439995+


(1)
AGO.mut 		(2)
AGO1.ip 		(15)
AGO2.ip 		(2)
AGO3.ip 		(5)
B-CELL 		(27)
BRAIN 		(3)
CELL-LINE 		(1)
DCR.mut 		(2)
DGCR8.mut 		(8)
EMBRYO 		(4)
ESC 		(3)
FIBROBLAST 		(2)
HEART 		(1)
KIDNEY 		(3)
LIVER 		(1)
LUNG 		(1)
LYMPH 		(11)
OTHER 		(1)
OTHER.ip 		(5)
OTHER.mut 		(7)
PIWI.ip 		(2)
PIWI.mut 		(7)
SKIN 		(4)
SPLEEN 		(23)
TESTES 		(1)
THYMUS 		(3)
TOTAL-RNA

Sense strand
GGAAGTTCTGTCACGTCCTTCACAAGGTCCTCCGGGACGGACACCCCAACGTGAGTAGTGAGCACAGCCCTTGGTCCCACAGGCTCAGGCAAGCGCCGCCGCCATGCCACCAGCTGACATCATCCACTGTATCCCATGGAAGTGTGCTGCTCTGACATGTGTCTGTCCTCCTGGGCTGGGGGCTGGACACCCTGCCCAGTGCTGGGAGGGACGGCTCAGGTTCTGTGTCCTCCCCTCCCTTCTCTGGTTGCAGGTCCTGCATGACTATCAGCGGTACCGGAGCAACATACGTGAGATCGGTGA
......................................................................................................................................((((..((.((...)).))..)))).((((..(((((......)))))..))))...((((((((....(((((((..(((.(((...))).)))...)))))))....))))..))))..................................................
...................................................................................................................................132......................................................................................................................253................................................
SizePerfect hitTotal NormPerfect NormSRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		mjTestesWT3()
Testes Data. (testes)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR206942(GSM723283)
other. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		mjTestesWT2()
Testes Data. (testes)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR095853(SRX039174)
"sequencing of miRNA from wild type and disea. (heart)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR206940(GSM723281)
other. (brain)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR037937(GSM510475)
293cand2. (cell line)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR073954(GSM629280)
total RNA. (blood)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR306528(GSM750571)
19-24nt. (ago2 brain)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTGCAGT.................................................24137.0021.006.001.00-3.00-3.00--1.003.00----1.00----2.00-3.00-1.002.00-------------1.00-------1.00-1.00-------------------------1.00----1.00----1.001.00---1.00--1.00------1.00-1.00-----
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTGCAG..................................................23121.0021.001.001.00---1.002.00--1.004.00----2.00--2.00-------1.00-1.00-------------1.00-----------------1.00----------1.00-1.00------------1.00--------------------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTGC....................................................2116.006.00-1.00--2.00--------------------1.00--------------------------------------1.00----------------1.00-------------------------
........................................................................................................................................TGGAAGTGTGCTGCTCTGACATGTG..............................................................................................................................................2515.005.00-------2.00-------------------1.00----1.00-1.00------------------------------------------------------------------------
................................................................................................................................................................................................TGCCCAGTGCTGGGAGGGACGG.........................................................................................2214.004.00----1.001.00-------------------------2.00---------------------------------------------------------------------------
............................................................................................................................................................................................................................................CCCTTCTCTGGTTGCAGT.................................................184.000.00---------------1.00-------------------------2.001.00----------------------------------------------------------------
.......................................................................................................................................................................................................................................CCCCTCCCTTCTCTGGTTGCAGT.................................................2314.001.00-1.00--------------------1.001.001.00----------------------------------------------------------------------------------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTGCA...................................................2213.003.00----------------------------1.00----------------------------------1.00---1.00---------------------------------------
........................................................................................................................................TGGAAGTGTGCTGCTCTGACATGTGTCT...........................................................................................................................................2812.002.00-------1.00--------------------------------------------1.00------------------------------------------------------
..........................................................................................................................................................................................................................................CTCCCTTCTCTGGTTGCAG..................................................1912.002.00--------------------------------------------2.00--------------------------------------------------------------
....................................................................................................................................................................................................................................CCTCCCCTCCCTTCTCTGGTTGC....................................................2312.002.00-1.00------------------------------------------------------------------1.00--------------------------------------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTGCAT..................................................2312.003.00---1.00-----------------------------1.00-------------------------------------------------------------------------
....................................................................................................................................................................................................................................CCTCCCCTCCCTTCTCTGGTTGT....................................................232.000.00-------------------1.00-----------------------1.00---------------------------------------------------------------
.....................................................................................................................................................................................................................................CTCCCCTCCCTTCTCTGGTTGT....................................................222.000.00-1.00------------------------1.00--------------------------------------------------------------------------------
..............................................................................................................................................................................................CCTGCCCAGTGCTGGAAG...............................................................................................182.000.00--------1.00-------------------------------------------------------------------------------------------1.00------
...................................................................................................................................TCCCATGGAAGTGTGCTGCTCTGAC...................................................................................................................................................2512.002.00-------------------------------------1.00--1.00------------------------------------------------------------------
...................................................................................................................................TCCCATGGAAGTGTGCTGCTCTGACAAA................................................................................................................................................281.000.00----------------------------------------1.00------------------------------------------------------------------
........................................................................................................................CATCCACTGTATCCCATGGAAGTGTGC............................................................................................................................................................2711.001.00--------------------------------1.00--------------------------------------------------------------------------
.......CTGTCACGTCCTTCACAAGGTCCT................................................................................................................................................................................................................................................................................2411.001.00--------------------1.00--------------------------------------------------------------------------------------
................................................................................................................................................TGCTGCTCTGACATGTGTCTGTCCTCC....................................................................................................................................2711.001.00-------1.00---------------------------------------------------------------------------------------------------
........................................................................................................TGCCACCAGCTGACATCAGCT..................................................................................................................................................................................211.000.00------------------------------------------------------------------------------------------1.00----------------
.........................................................................................................GCCACCAGCTGACATCATCCAC................................................................................................................................................................................2211.001.00--------1.00--------------------------------------------------------------------------------------------------
...................................................................................CTCAGGCAAGCGCCGCCGCCAT......................................................................................................................................................................................................2211.001.00-------------------------------------------------------------------------------------------1.00---------------
..........................................................................................................................................................................................................................................................................ATCAGCGGTACCGGAGCAAC.................2011.001.00------------1.00----------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................TATCAGCGGTACCGGAGCAAT.................211.000.00-------------------------------------------------------1.00---------------------------------------------------
..............GTCCTTCACAAGGTCCTCC..............................................................................................................................................................................................................................................................................1911.001.00--------------------------------------1.00--------------------------------------------------------------------
........................................................................................................TGCCACCAGCTGACAGCGT....................................................................................................................................................................................191.000.00---------------------------------------------------------1.00-------------------------------------------------
...................................................TGAGTAGTGAGCACAGCCCTTGGTCC..................................................................................................................................................................................................................................2611.001.00------------------------------------------------------1.00----------------------------------------------------
.....................................................................................................................................................................................................................................................................TGACTATCAGCGGTACCGGAGCAACAT...............2711.001.00------------------------------1.00----------------------------------------------------------------------------
........................................................................................................................................TGGAAGTGTGCTGCTCTGACATGTGTCTG..........................................................................................................................................2911.001.00------------------------------------1.00----------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................TGACTATCAGCGGTACCGGAGCAACA................2611.001.00------------------------------1.00----------------------------------------------------------------------------
...........................................................................................................................................................................................................GGGAGGGACGGCTCAGACG.................................................................................191.000.00-----------------------------------------------1.00-----------------------------------------------------------
................................................................................................................................................................................................TGCCCAGTGCTGGGAGGGACGGA........................................................................................2311.004.00-----------------------------1.00-----------------------------------------------------------------------------
................................................................................................................................................................................................TGCCCAGTGCTGGGAGGGACG..........................................................................................2111.001.00-----------------------------------------------------------1.00-----------------------------------------------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTGCCGT.................................................2411.006.00-1.00---------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................CAGTGCTGGGAGGGACGG.........................................................................................1811.001.00-----------------------------------1.00-----------------------------------------------------------------------
......................................................................................................................................................................................................................................................................GACTATCAGCGGTACCGGAGC....................2111.001.001.00----------------------------------------------------------------------------------------------------------
........................................................................................................TGCCACCAGCTGACATCGCTT..................................................................................................................................................................................211.000.00--1.00--------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TGCCCAGTGCTGGGAGGGACGGCTCAGT...................................................................................281.000.00----------------------------------------------------------------------1.00------------------------------------
...............................................................................................................................TGTATCCCATGGAAGTGTGCTGCTCTG.....................................................................................................................................................2711.001.00-------------------------------------------------------------1.00---------------------------------------------
..................................................................................................................TGACATCATCCACTGTAGCTC........................................................................................................................................................................211.000.00--1.00--------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................CTCCCCTCCCTTCTCTGGTTGCTT..................................................241.000.00---------------------------------------------------------------------------1.00-------------------------------
..................................................GTGAGTAGTGAGCACAGCCCTTGGTCCC.................................................................................................................................................................................................................................2811.001.00-----------------------------------------------------------------1.00-----------------------------------------
.................................................................................................................................................................................................................................................................TGCATGACTATCAGCGGTACCGGAGC....................2611.001.00-----------------1.00-----------------------------------------------------------------------------------------
..............................................................................................................................................................................................CCTGCCCAGTGCTGGAAGG..............................................................................................191.000.00------------------------------------------------------------------------------1.00----------------------------
....................................................................................................................................................................................................................................CCTCCCCTCCCTTCTCTGGTTTT....................................................231.000.00-------------------------------------------1.00---------------------------------------------------------------
...................................GACGGACACCCCAAC.............................................................................................................................................................................................................................................................1511.001.00-----------------------------------------------------------------------------------------------1.00-----------
........................................................................................................................................TGGAAGTGTGCTGCTCTGACATGTGTCTGTC........................................................................................................................................3111.001.00---------------------------1.00-------------------------------------------------------------------------------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTGCCG..................................................2311.006.00------1.00----------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................CCCCTCCCTTCTCTGGTTGCAG..................................................2211.001.001.00----------------------------------------------------------------------------------------------------------
..................................................................................................................TGACATCATCCACTGTAGCT.........................................................................................................................................................................201.000.00--------------------------------------------------------------------------------------------------------1.00--
..................................................................................................................................................................................................................................................................................TACCGGAGCAACATACGTGAGA.......2211.001.00-------------1.00---------------------------------------------------------------------------------------------
...................................................................................................................................TCCCATGGAAGTGTGCTGCT........................................................................................................................................................2011.001.00-----------------1.00-----------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTGCATT.................................................2411.003.00----------------------1.00------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................CTATCAGCGGTACCGGAGC....................1911.001.00-----------------1.00-----------------------------------------------------------------------------------------
................................................................................................................................................................GTCTGTCCTCCTGGGCTGGGGGCT.......................................................................................................................2411.001.00--------------------1.00--------------------------------------------------------------------------------------
...........................................................................................................................................................................................................GGGAGGGACGGCTCAGCCCG................................................................................201.000.00-------------------------------------------------1.00---------------------------------------------------------
........................................................................................................TGCCACCAGCTGACAGCGG....................................................................................................................................................................................191.000.00--1.00--------------------------------------------------------------------------------------------------------
...............................................................................................CCGCCGCCATGCCACCAGCTGA..........................................................................................................................................................................................2211.001.001.00----------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................CAACATACGTGAGATCGG...1811.001.00-------------------------------------------------------------------------------------------------------1.00---
..................................................GTGAGTAGTGAGCACAGCCCTTGGT....................................................................................................................................................................................................................................2511.001.00------------------------------------------------------------------------1.00----------------------------------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTGCAGA.................................................2411.0021.00------------------------------------------------------------------------------------------------------1.00----
..........................................................................................AAGCGCCGCCGCCATGCCACC................................................................................................................................................................................................2111.001.001.00----------------------------------------------------------------------------------------------------------
.........................................................................................................................................GGAAGTGTGCTGCTCTGAC...................................................................................................................................................1911.001.00-------------1.00---------------------------------------------------------------------------------------------
................................................................................................................................................................................................TGCCCAGTGCTGGGAGGGACGGCTCAGG...................................................................................2811.001.00---------------------------------------1.00-------------------------------------------------------------------
.....................................................................................................CCATGCCACCAGCTGACATCATCCACTGTA............................................................................................................................................................................3011.001.00--------------------------------------------------------------------------------------------------1.00--------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTGCTT..................................................2311.006.00---1.00-------------------------------------------------------------------------------------------------------
........................................................................................................................................TGGAAGTGTGCTGCTCTGACATGTGT.............................................................................................................................................2611.001.00----------------------------------1.00------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................ATCAGCGGTACCGGAGCAACATAC.............2411.001.00------------1.00----------------------------------------------------------------------------------------------
...............................................................................................................................................................................................CTGCCCAGTGCTGGGAGGGACGGCT.......................................................................................2511.001.001.00----------------------------------------------------------------------------------------------------------
.........................................................................................CAAGCGCCGCCGCCATGCCACCAGCTGAC.........................................................................................................................................................................................2911.001.00--------------------1.00--------------------------------------------------------------------------------------
.............................................................................................................................................................................................................GAGGGACGGCTCAGGTTCT...............................................................................1911.001.00-----------------------------------------------------------------------------------1.00-----------------------
...............................................................................................................................................................................................CTGCCCAGTGCTGGGAGGGACGGCTCA.....................................................................................2711.001.00-----------------------------------------------------------------------------1.00-----------------------------
..................................................................................................................TGACATCATCCACTGTATCCCATGGAAGC................................................................................................................................................................291.000.00------------------------------------1.00----------------------------------------------------------------------
..........................GTCCTCCGGGACGGACACCCCAAC.............................................................................................................................................................................................................................................................2411.001.00------------------1.00----------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTGCAGTTT...............................................2611.0021.001.00----------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTG.....................................................2011.001.00----------------------1.00------------------------------------------------------------------------------------
.............................CTCCGGGACGGACACCCC................................................................................................................................................................................................................................................................1811.001.00------------------------------------------------------------------------------------------------1.00----------
....................................................................................................................................................................................................................................CCTCCCCTCCCTTCTCTGGTTT.....................................................221.000.00----1.00------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................GCATGACTATCAGCGGTACCGGAGCAAC.................2811.001.00---------------------------------------1.00-------------------------------------------------------------------
...................................................................................................................................TCCCATGGAAGTGTGCTGCTCTGACATGT...............................................................................................................................................2911.001.00------------------------------------------------------------------1.00----------------------------------------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTGCC...................................................2211.006.00------1.00----------------------------------------------------------------------------------------------------
...........................................................................................................CACCAGCTGACATCACCG..................................................................................................................................................................................181.000.00----------------------------------------------------------------------------------------1.00------------------
.....................................................................................................................................CCATGGAAGTGTGCTGCTCTGA....................................................................................................................................................2211.001.00----------------------------------------------------------1.00------------------------------------------------
..............................................................................................................................................................................................CCTGCCCAGTGCTGGGAGGGACGGCCC......................................................................................271.000.00---------------------------------------------------------------------1.00-------------------------------------
....................................................................................................................................................................................................................................CCTCCCCTCCCTTCTCTGGTTAT....................................................231.000.00---------------------------------------------------------------------------------------------1.00-------------
.....................................................................................................................................................................................................................................................................TGACTATCAGCGGTACCGGAGCAAC.................2511.001.00-------------------------------------1.00---------------------------------------------------------------------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTT......................................................1921.001.00-------------------------1.00---------------------------------------------------------------------------------
..................................................GTGAGTAGTGAGCACAGCCCTTGGTCCCAAA..............................................................................................................................................................................................................................311.000.00----------------------------------------------------------------------------------------------1.00------------
..........................................................................................................................................................................................................TGGGAGGGACGGCTCTC....................................................................................171.000.00-----------1.00-----------------------------------------------------------------------------------------------
......................................................................................................................................................TCTGACATGTGTCTGTCCTCCTGGGC...............................................................................................................................2611.001.00----------------------------------------------------------------------------1.00------------------------------
..................................................................GCCCTTGGTCCCACACGGT..........................................................................................................................................................................................................................191.000.00---------------------------------------------------------------------------------------------------------1.00-
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTGCAAT.................................................2411.003.00-------------------------------------------------------------------------------------------------1.00---------
.....................................................................................................................................CCATGGAAGTGTGCTGCTCTGAT...................................................................................................................................................2311.001.00---------------------------------------------------------------------------------------1.00-------------------
..............................................................................................................................................................................................CCTGCCCAGTGCTGGGAGGGA............................................................................................2111.001.00----------------------------------------------------------------------------------1.00------------------------
..........................................................................................................................................................................................................................................................................ATCAGCGGTACCGGAGCAACA................2111.001.00------------1.00----------------------------------------------------------------------------------------------
.........................................................................................................................................................................CCTGGGCTGGGGGCTCGGC...................................................................................................................191.000.00-----------------------------------------------------1.00-----------------------------------------------------
..........................................................................................................................................................................................................................................................................ATCAGCGGTACCGGAGCAACAT...............2211.001.00-------------1.00---------------------------------------------------------------------------------------------
...............................................................................................................................................................................................CTGCCCAGTGCTGGGAGGGACGT.........................................................................................231.000.00----1.00------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................CTCCCCTCCCTTCTCTGGTT......................................................2020.500.50------0.50----------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGT.......................................................1820.500.50-------------------------0.50---------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................AGCGGTACCGGA......................1240.250.25-----------0.25-----------------------------------------------------------------------------------------------

Antisense strand
GGAAGTTCTGTCACGTCCTTCACAAGGTCCTCCGGGACGGACACCCCAACGTGAGTAGTGAGCACAGCCCTTGGTCCCACAGGCTCAGGCAAGCGCCGCCGCCATGCCACCAGCTGACATCATCCACTGTATCCCATGGAAGTGTGCTGCTCTGACATGTGTCTGTCCTCCTGGGCTGGGGGCTGGACACCCTGCCCAGTGCTGGGAGGGACGGCTCAGGTTCTGTGTCCTCCCCTCCCTTCTCTGGTTGCAGGTCCTGCATGACTATCAGCGGTACCGGAGCAACATACGTGAGATCGGTGA
......................................................................................................................................((((..((.((...)).))..)))).((((..(((((......)))))..))))...((((((((....(((((((..(((.(((...))).)))...)))))))....))))..))))..................................................
...................................................................................................................................132......................................................................................................................253................................................
SizePerfect hitTotal NormPerfect NormSRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		mjTestesWT3()
Testes Data. (testes)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR206942(GSM723283)
other. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		mjTestesWT2()
Testes Data. (testes)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR095853(SRX039174)
"sequencing of miRNA from wild type and disea. (heart)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR206940(GSM723281)
other. (brain)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR037937(GSM510475)
293cand2. (cell line)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR073954(GSM629280)
total RNA. (blood)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR306528(GSM750571)
19-24nt. (ago2 brain)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)
.......CTGTCACGTCCTTCAC........................................................................................................................................................................................................................................................................................ 163.000.00----------------3.00------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................CCTCCCTTCTCTGGTTGGT................................................... 192.000.00---------------------------------------------1.00-----1.00-------------------------------------------------------
......................................................................................................................................................................................................................................................................GACTATCAGCGGTACCGGAGCAACA................ 2511.001.00--------------------------------------------------------1.00--------------------------------------------------
................................................................................................................................................................................................................................................TCTCTGGTTGCAGGTCCTGCAT......................................... 2211.001.00-----------------------------1.00-----------------------------------------------------------------------------
........................................................................GGTCCCACAGGCTCAGGG..................................................................................................................................................................................................................... 181.000.00--1.00--------------------------------------------------------------------------------------------------------
.....................................................................................CAGGCAAGCGCCGCCGCGC....................................................................................................................................................................................................... 191.000.00---------------------------------1.00-------------------------------------------------------------------------
.........................GGTCCTCCGGGACGGACA.................................................................................................................................................................................................................................................................... 181.000.00--------------------------------------------------------------------------------1.00--------------------------
...................................................................................................................GACATCATCCACTGTCGCT......................................................................................................................................................................... 191.000.00--1.00--------------------------------------------------------------------------------------------------------
.......CTGTCACGTCCTTCACCT...................................................................................................................................................................................................................................................................................... 181.000.00-----------------------------------1.00-----------------------------------------------------------------------
.................................................................................................GCCGCCATGCCACCAGCTGACATCAT.................................................................................................................................................................................... 2611.001.00--------1.00--------------------------------------------------------------------------------------------------
.....................................................................................................................CATCATCCACTGTATCA......................................................................................................................................................................... 171.000.00-----------1.00-----------------------------------------------------------------------------------------------
................................................................................AGGCTCAGGCAAGCGCGCG............................................................................................................................................................................................................ 191.000.00--------------------------------------------------1.00--------------------------------------------------------
.....................ACAAGGTCCTCCGGGATTGT...................................................................................................................................................................................................................................................................... 201.000.00--------------------------------------------------------------1.00--------------------------------------------
.....................................................................CTTGGTCCCACAGGCCAAC....................................................................................................................................................................................................................... 191.000.00--------------1.00--------------------------------------------------------------------------------------------
.................................................................................................GCCGCCATGCCACCACGAC........................................................................................................................................................................................... 191.000.00-----------------------1.00-----------------------------------------------------------------------------------
.....................ACAAGGTCCTCCGGGAACGG...................................................................................................................................................................................................................................................................... 201.000.00-----------1.00-----------------------------------------------------------------------------------------------
......................................................................................................CATGCCACCAGCTGACAGA...................................................................................................................................................................................... 191.000.00--------------1.00--------------------------------------------------------------------------------------------
................................................................CAGCCCTTGGTCCCACATG............................................................................................................................................................................................................................ 191.000.00--1.00--------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................TGTCCTCCCCTCCCTTCT............................................................ 1850.400.40----------------------------------------------------------------------------------------------------------0.40