ID: uc008zhq.7
GENE: Ddx54(8)
chr5:121070339-121070530+


(2)
AGO1.ip 		(2)
AGO2.ip 		(2)
AGO3.ip 		(5)
B-CELL 		(10)
BRAIN 		(1)
CELL-LINE 		(1)
DCR.mut 		(1)
DGCR8.mut 		(4)
EMBRYO 		(7)
ESC 		(1)
HEART 		(1)
LIVER 		(1)
LUNG 		(9)
OTHER 		(1)
OTHER.mut 		(2)
PIWI.ip 		(1)
PIWI.mut 		(5)
SKIN 		(3)
SPLEEN 		(11)
TESTES 		(1)
THYMUS 		(1)
TOTAL-RNA

Sense strand
GCTGTTCTCAGCTACACTGCCCAAGCTGCTGGTGGAATTTGCACGGGCAGGTGAGCCAGTGAGTGGGGCGTGGTGCTGGACTCGGGGTGGGGGTGGGGTCTGCCCCTTCATGACCCCTGCAATCCCCCCCGCACCCCAACAGGCCTCACAGAGCCCGTGCTCATCCGCCTGGACGTAGACTCCAAGCTCAAT
...................................................................................((((((.(((.((((..(((...............)))..))))))).)))))).......................................................
............................................................................77...............................................................142................................................
SizePerfect hitTotal NormPerfect NormAgo3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		mjTestesWT1()
Testes Data. (testes)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)
......................................TTGCACGGGCAGGTGAGCCAG.....................................................................................................................................21110.0010.00--10.00---------------------------------------------------------
.................................................................................TCGGGGTGGGGGTGGGGTCTG..........................................................................................2119.009.00-5.00--2.001.00-----1.00------------------------------------------------
.......................................................................................................................CAATCCCCCCCGCACCCCAACA...................................................2219.009.004.00--1.00-1.00-----1.001.00---1.00-------------------------------------------
.................................................................................TCGGGGTGGGGGTGGGGTCTGCC........................................................................................2319.009.00---1.00-2.00--2.00-----------1.00---1.001.00-----------------------1.00----------
........................................................................................................................AATCCCCCCCGCACCCCAACAG..................................................2217.007.00-3.00-----1.001.00---------1.00---------------------------------1.00-------
.......................................................................................................................CAATCCCCCCCGCACCCCAACT...................................................2216.001.003.00--1.001.00------1.00------------------------------------------------
........................................................................................................................AATCCCCCCCGCACCCCAACAGT.................................................2315.007.001.001.00--1.00-------------1.00-------------1.00---------------------------
.......................................................................................................................CAATCCCCCCCGCACCCCAACC...................................................2214.001.002.00--1.00-1.00------------------------------------------------------
..........................TGCTGGTGGAATTTGCACGGGC................................................................................................................................................2213.003.00-2.00--------------------------------1.00-------------------------
......................AAGCTGCTGGTGGAATT.........................................................................................................................................................1712.002.00---------2.00--------------------------------------------------
.......................................................................................................................CAATCCCCCCCGCACCCCAA.....................................................2012.002.00---1.00------------1.00-------------------------------------------
..................................GAATTTGCACGGGCAG..............................................................................................................................................1612.002.00----------2.00-------------------------------------------------
........................................................................................................................AATCCCCCCCGCACCCCCACA...................................................212.000.001.00--1.00--------------------------------------------------------
.......................................................................................................................CAATCCCCCCCGCACCCCAAT....................................................2112.002.002.00-----------------------------------------------------------
..........................TGCTGGTGGAATTTGCACGGG.................................................................................................................................................2112.002.00-1.00--------------------------------------1.00-------------------
........................................................................................................................AATCCCCCCCGCACCCCAAC....................................................2012.002.00---1.00-------------------------------------1.00------------------
........................................................................................................................AATCCCCCCCGCACCCCAACA...................................................2112.002.001.00--1.00--------------------------------------------------------
................................................................................................................................................................TCATCCGCCTGGACGTAGACTCCAAG......2612.002.00-------------2.00----------------------------------------------
.................................................................................TCGGGGTGGGGGTGGGGTCT...........................................................................................2021.501.50-----1.00------0.50-----------------------------------------------
................................TGGAATTTGCACGGGCAG..............................................................................................................................................1811.001.00--------------------1.00---------------------------------------
..................................................................................CGGGGTGGGGGTGGGGTCTGC.........................................................................................2111.001.00-----------------1.00------------------------------------------
........................................................................................GGGGGTGGGGTCTGCGGG......................................................................................181.000.00---------------1.00--------------------------------------------
..................................................................................CGGGGTGGGGGTGGGGTCTGCC........................................................................................2211.001.00----------------------------------------------1.00-------------
.................TGCCCAAGCTGCTGGTGGAATTTGCAC....................................................................................................................................................2711.001.00------------------------------------1.00-----------------------
........................................................................................................................AATCCCCCCCGCACCGGA......................................................181.000.00---------------------------------------------------1.00--------
.........................................................................................................................ATCCCCCCCGCACCCCAA.....................................................1811.001.00-------1.00----------------------------------------------------
....................CCAAGCTGCTGGTGGAATTTGCACGGGC................................................................................................................................................2811.001.00----------------------1.00-------------------------------------
................................................................................CTCGGGGTGGGGGTGGGGTCTGC.........................................................................................2311.001.00-------------------------------------------1.00----------------
...............................................................................ACTCGGGGTGGGGGTGGGGTCTGT.........................................................................................241.000.00----1.00-------------------------------------------------------
.......................................................................................................................................................AGCCCGTGCTCATCCGCCTGGACGTAGACTC..........3111.001.00-----------------------------------------------1.00------------
................................................................................CTCGGGGTGGGGGTGGGGTCTGT.........................................................................................231.000.00----1.00-------------------------------------------------------
..................................................................................................................................................................ATCCGCCTGGACGTAGACTC..........2011.001.00-------------------------------------------------------1.00----
.............................TGGTGGAATTTGCACGGGCAGGCCTT.........................................................................................................................................261.000.00-----------------------------1.00------------------------------
.................................................................................TCGGGGTGGGGGTGGGGTCTGAATT......................................................................................2511.009.00------------------------------------------------1.00-----------
...................................................................GCGTGGTGCTGGACTCGGGGTGGG.....................................................................................................2411.001.00----------------------------1.00-------------------------------
......................AAGCTGCTGGTGGAAAGAA.......................................................................................................................................................191.000.00----1.00-------------------------------------------------------
.................................................................................TCGGGGTGGGGGTGGGGTCTGCA........................................................................................231.000.00---1.00--------------------------------------------------------
...........................................................TGAGTGGGGCGTGGTTTA...................................................................................................................181.000.00---------------------------1.00--------------------------------
............................CTGGTGGAATTTGCACTT..................................................................................................................................................181.000.00------------------------------1.00-----------------------------
..................................................GTGAGCCAGTGAGTGGGGCGTGGTGCTGGACTCGGGGTGGGGGTGGGGTCTGCCCCTTCATGACCCCTGCAATCCCCCCCGCACCCCAAGAG..................................................921.000.00---------------------------------------------1.00--------------
........................GCTGCTGGTGGAATTTGCACGGG.................................................................................................................................................2311.001.00---------------1.00--------------------------------------------
............................CTGGTGGAATTTGCACGGGCAGG.............................................................................................................................................2311.001.00------------------------------------------1.00-----------------
...............................GTGGAATTTGCACGGGCAGGCC...........................................................................................................................................221.000.00---------------------1.00--------------------------------------
......................AAGCTGCTGGTGGAATTTGCACG...................................................................................................................................................2311.001.00-------------------------------1.00----------------------------
........................................................................................................................AATCCCCCCCGCACCCCAAT....................................................201.000.00---1.00--------------------------------------------------------
.................................................................................TCGGGGTGGGGGTGGTATA............................................................................................191.000.00--------------------------------------------------------1.00---
.........................CTGCTGGTGGAATTTGCACGGGCAGG.............................................................................................................................................2611.001.00---------------------------------------1.00--------------------
.....................CAAGCTGCTGGTGGAATTTGCACGGTA................................................................................................................................................271.000.00------------1.00-----------------------------------------------
.......................................................................................................................CAATCCCCCCCGCACCCCAAAT...................................................2211.002.00-1.00----------------------------------------------------------
.........................................................................................................................................................................TGGACGTAGACTCCAAGCTCAAT2311.001.00-------------------1.00----------------------------------------
.................................................................................TCGGGGTGGGGGTGGGGTCTGCCT.......................................................................................2411.009.00-----------------1.00------------------------------------------
................................TGGAATTTGCACGGGCAGG.............................................................................................................................................1911.001.00-------------------------------------1.00----------------------
........................................................................................................................AATCCCCCCCGCACCCCAACAGA.................................................2311.007.00-1.00----------------------------------------------------------
.........................................................................................................................ATCCCCCCCGCACCCCAACA...................................................2011.001.001.00-----------------------------------------------------------
.......................................................................................................................CAATCCCCCCCGCACCCCAATTT..................................................2311.002.00--------------------------------------------1.00---------------
.................................GGAATTTGCACGGGCAGGCCT..........................................................................................................................................211.000.00--------------------------------------1.00---------------------
.....................CAAGCTGCTGGTGGAATTTG.......................................................................................................................................................2011.001.00-----------------------------------------------------1.00------
................................................................................CTCGGGGTGGGGGTGGGGTCTGCC........................................................................................2411.001.00-----------------------1.00------------------------------------
...............................GTGGAATTTGCACGGGCAG..............................................................................................................................................1911.001.00--------------------------------------------------1.00---------
....................................................................................GGGTGGGGGTGGGGTCTGCCCC......................................................................................2211.001.00---------------------------------1.00--------------------------
.......................................................................................................................CAATCCCCCCCGCACCCCAAC....................................................2111.001.001.00-----------------------------------------------------------
...............................................................TGGGGCGTGGTGCTGGCG...............................................................................................................181.000.00-----------------------------------1.00------------------------
.................TGCCCAAGCTGCTGGTGGAA...........................................................................................................................................................2011.001.00-------1.00----------------------------------------------------
.............ACACTGCCCAAGCTGCTGGTGGAAT..........................................................................................................................................................2511.001.00-------1.00----------------------------------------------------
.................................................................................TCGGGGTGGGGGTGGATA.............................................................................................181.000.00------1.00-----------------------------------------------------
......................AAGCTGCTGGTGGAATTT........................................................................................................................................................1811.001.00------------------------------------------------------1.00-----
...........CTACACTGCCCAAGCTGCTGGT...............................................................................................................................................................2211.001.00----------1.00-------------------------------------------------
...................................................................................................................................................................TCCGCCTGGACGTAGAC............1711.001.00-------------------1.00----------------------------------------
.................................................................................TCGGGGTGGGGGTGGGGTC............................................................................................1920.500.50-----0.50------------------------------------------------------
....................................ATTTGCACGGGCAGG.............................................................................................................................................1520.500.50---------------------0.50--------------------------------------
...........CTACACTGCCCAAGCTGC...................................................................................................................................................................1820.500.50---------------------------------------------------------0.50--
.......................................................................................TGGGGGTGGGGTCTGC.........................................................................................16100.100.10-----------------------------------------------------------0.10

Antisense strand
GCTGTTCTCAGCTACACTGCCCAAGCTGCTGGTGGAATTTGCACGGGCAGGTGAGCCAGTGAGTGGGGCGTGGTGCTGGACTCGGGGTGGGGGTGGGGTCTGCCCCTTCATGACCCCTGCAATCCCCCCCGCACCCCAACAGGCCTCACAGAGCCCGTGCTCATCCGCCTGGACGTAGACTCCAAGCTCAAT
...................................................................................((((((.(((.((((..(((...............)))..))))))).)))))).......................................................
............................................................................77...............................................................142................................................
SizePerfect hitTotal NormPerfect NormAgo3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		mjTestesWT1()
Testes Data. (testes)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)
..............................................................................................................................................GCCTCACAGAGCCCGTCC................................ 181.000.00--------------1.00---------------------------------------------
...........................................................................................................................CCCCCCCGCACCCCACCCC.................................................. 191.000.00------1.00-----------------------------------------------------
.................................................................................................................................................................................GACTCCAAGCTCAATGGA 181.000.00--------------1.00---------------------------------------------
............................................................................................................................CCCCCCGCACCCCAATGC.................................................. 181.000.00--------------------------1.00---------------------------------
...........................................................................................................................CCCCCCCGCACCCCATTGT.................................................. 191.000.00------1.00-----------------------------------------------------
..........................................................................................................................TCCCCCCCGCACCCCAGTGA.................................................. 201.000.00---------1.00--------------------------------------------------
...........................................................................................................................CCCCCCCGCACCCCACGGG.................................................. 191.000.00------1.00-----------------------------------------------------
............................................................................................................................CCCCCCGCACCCCAACA................................................... 1730.330.33----------------------------------------------------------0.33-