ID: uc008zeg.21
GENE: Gcn1l1(21)
chr5:116041874-116042123+


(1)
AGO.mut 		(2)
AGO1.ip 		(8)
AGO2.ip 		(2)
AGO3.ip 		(10)
B-CELL 		(23)
BRAIN 		(3)
CELL-LINE 		(1)
DCR.mut 		(2)
DGCR8.mut 		(9)
EMBRYO 		(8)
ESC 		(3)
FIBROBLAST 		(3)
HEART 		(2)
KIDNEY 		(10)
LIVER 		(1)
LUNG 		(4)
LYMPH 		(14)
OTHER 		(7)
OTHER.mut 		(5)
PIWI.ip 		(3)
PIWI.mut 		(6)
SKIN 		(7)
SPLEEN 		(1)
TDRD1.ip 		(24)
TESTES 		(1)
THYMUS 		(1)
TOTAL-RNA 		(1)
UTERUS

Sense strand
TTACTGCTCTCTCCACTTTGAAGGCACCTGGTGGCTGTGGCCTTTATAGGGGTTACCATGGATATGTGGTGGGCTTGGGGGCCCTGGTCCTAGACTTGAGGCTGGCTTACAATTCTGGAAGCCAGGGGGCTTTCTTTCCTCTGGGGGAAAGGTAGATCTGCCTGTGGATGTAGAACTGGCTTCTGACCCTGGTCCCTCAGGAAATAAAGAAAAAGAAAGGCATAAAAGAGGAGGTACAGCTGACCAGCAA
............................................................................................................................................((((((((.(((((((...(((.((.........)).))).))))..)))..))))))))..................................................
......................................................................................................................................135..............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		mjLiverWT2()
Liver Data. (liver)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR553582(SRX182788)
source: Brain. (Brain)		mjLiverKO2()
Liver Data. (Zcchc11 liver)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesWT4()
Testes Data. (testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjTestesWT3()
Testes Data. (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR073954(GSM629280)
total RNA. (blood)		mjTestesWT2()
Testes Data. (testes)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR206940(GSM723281)
other. (brain)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR553584(SRX182790)
source: Heart. (Heart)		mjLiverWT3()
Liver Data. (liver)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR077865(GSM637802)
18-30 nt small RNAs. (liver)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		GSM509276(GSM509276)
small RNA cloning by length. (testes)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		GSM416732(GSM416732)
MEF. (cell line)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR095853(SRX039174)
"sequencing of miRNA from wild type and disea. (heart)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR525238(SRA056111/SRX170314)
Second IgG control. (Blood)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR206942(GSM723283)
other. (brain)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR306528(GSM750571)
19-24nt. (ago2 brain)
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTGC.........................................................................................221107.00107.0011.0013.007.00--3.002.00-4.00-1.004.006.004.003.003.003.004.001.001.002.00---1.00--1.001.00-1.00-1.00--3.001.00-1.001.00-2.00---1.00--1.00-----1.002.001.00-1.00---2.002.00---1.00--1.00---------1.00----------1.00-1.00----1.00--1.001.00---------------1.00------1.00-1.00--
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTGCC........................................................................................23145.0045.006.002.003.00--2.001.007.001.00-2.00--1.00--2.00--1.00---2.00--4.001.00--1.002.00----------------1.001.00----1.00----------------------------------1.00------------------1.00--1.00-------1.00----------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCT...........................................................................................20136.0036.00----9.00-3.00--------1.00--3.00---3.001.002.00------------1.001.00-1.00--1.001.00--------1.00--1.00-1.001.002.00---1.00---1.00-------------------1.00-----------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTGT.........................................................................................22122.0013.00---18.00-1.00-------------------------------------------1.00-----------------------------------------------------------------1.00------1.00-------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTG..........................................................................................21113.0013.001.00----1.00----1.00----1.00-1.00--2.00------------1.002.00-1.00--------------1.00-------------------1.00----------------------------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATC............................................................................................1919.009.00----3.00-----------------1.001.00-------------------1.001.00--1.00----------------------------------------------1.00-----------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTGCAT.......................................................................................2418.00107.00--6.00-------------------------------------------------1.00----------------1.00------------------------------------------------------------
..........................................................................................................................................................................................................AATAAAGAAAAAGAAAGGCA............................2017.007.00---------7.00------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................TGTGGATGTAGAACTGG.......................................................................1726.006.001.00-------------2.50------------------------2.00-------------------------0.50----------------------------------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTGCCA.......................................................................................2415.0045.001.00---------1.001.00---------1.00--------------------------------------------------------------------1.00---------------------------------------
...................................................................................................................................................................................CTTCTGACCCTGGTCCCTCAGT.................................................2215.001.001.00-------1.00----------------1.00---------------------------------------------------------1.00-1.00--------------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTGCA........................................................................................2314.00107.00-----------1.00----------------------1.00----------------------1.00------1.00-----------------------------------------------------------------
................................................................................................................................................................................TGGCTTCTGACCCTGGTCCCTCAGA.................................................254.000.00-----------------------------------------------------------------1.00---------1.00-----------------------1.00----------------1.00-------------
..........................................................................................................................................CTCTGGGGGAAAGGTAGATCTGC.........................................................................................2314.004.001.001.00----1.00------------1.00--------------------------------------------------------------------------------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTGA.........................................................................................2213.0013.00-----1.00------------------------------------------------------------1.00-------------------------1.00-------------------------------------
..................................................................................................................................................................................................................................AGAGGAGGTACAGCTGAC......1813.003.00-------------------------------------2.00----------------------------------------------------------------------------------1.00---------
................................................................................................................................................................................TGGCTTCTGACCCTGGTCCCTCAGT.................................................253.000.00--------1.00---------------------1.00-----------------------------------------------------------------1.00---------------------------------
...................................................................................................................................................................................CTTCTGACCCTGGTCCCTCAGA.................................................2213.001.00-1.00---1.00----------------------1.00-----------------------------------------------------------------------------------------------------
............................................................................................................................................CTGGGGGAAAGGTAGATCTGC.........................................................................................2113.003.00-1.002.00-------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................TAAAAGAGGAGGTACAGCTGACCAGC..2612.002.00--------------------------------------------------------------------------1.00--------------------------------------1.00----------------
...........................................................................................................................................TCTGGGGGAAAGGTAGAT.............................................................................................1812.002.00------1.00-----------------1.00---------------------------------------------------------------------------------------------------------
.................................................................................................................................................................CTGTGGATGTAGAACTGGCTT....................................................................2112.002.00----------------------------------------------2.00-----------------------------------------------------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTGCAA.......................................................................................2412.00107.00-----1.00---------------------------------------------------------------------------------1.00------------------------------------------
.............................................................................................................................................TGGGGGAAAGGTAGATCTGCC........................................................................................2112.002.00------1.00---------------------------------------------------------------------------------------------------------1.00-----------------
....................................................................................................................................................................................................................................AGGAGGTACAGCTGACCAGC..2012.002.00---------------------------1.00-----------------------------------------------------------------------------------------1.00------------
..............................................................................................................................................................................................................................TAAAAGAGGAGGTACAGCTGACCAGCAA2812.002.00----------------------------------------------------------------------------1.00----1.00------------------------------------------------
.............................................................................................................................................TGGGGGAAAGGTAGATCTGCCTGT.....................................................................................2412.002.00---------------------------------------------------1.00-----------------------------------------------------1.00------------------------
.................................................................................................................TCTGGAAGCCAGGGGGACG......................................................................................................................192.000.00-----------------------------2.00----------------------------------------------------------------------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTAA.........................................................................................2212.0036.00------------------------------------------------------------------------1.00--------------------------------------------------1.00------
..........................................................................................................................................CTCTGGGGGAAAGGTAGATCTGCC........................................................................................2412.002.001.00------------------------------------------------------------------------------------------------------------1.00--------------------
........................................................................................................................................TCCTCTGGGGGAAAGGTAGATCTGC.........................................................................................2512.002.00------------------------------------1.00-----------------------------------------1.00---------------------------------------------------
......................................................................................................................................................................................................................GAAAGGCATAAAAGAGGAGGTACAGCT.........2711.001.00-------------------------------------------------------------1.00--------------------------------------------------------------------
............................................................................................................................................................................................................TAAAGAAAAAGAAAGGCATAAAAGA.....................2511.001.00---------------------------------------------1.00------------------------------------------------------------------------------------
............................................................................................................................................CTGGGGGAAAGGTAGATCTGCC........................................................................................2211.001.001.00---------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTGG.........................................................................................2211.0013.00-----------------------------------------------------1.00----------------------------------------------------------------------------
..........................................................................................................................................CTCTGGGGGAAAGGTAGATCTAT.........................................................................................231.000.00-----------------------------------------------------------------------------------------------------------1.00----------------------
........................................................................................................................................TCCTCTGGGGGAAAGGTAGATCTG..........................................................................................2411.001.00---------------------1.00------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................TGGCTTCTGACCCTGGTCCCTCAGTAT...............................................271.000.00--------------------------------------------------------------------------------------------------------1.00-------------------------
............................................................................................................................................................................................................................CATAAAAGAGGAGGTACAGCTGACCAGCA.2911.001.00-------------------------------------------------------------------------------------------------1.00--------------------------------
........................................................................................................................................TCCTCTGGGGGAAAGGTAGATCTGCCTGTGGATGTAGAACTGGCTTCTGACCCTGGTCCCTCAG..................................................6411.001.00------------------------------------------1.00---------------------------------------------------------------------------------------
.....GCTCTCTCCACTTTGGT....................................................................................................................................................................................................................................171.000.00---------------------------------1.00------------------------------------------------------------------------------------------------
...CTGCTCTCTCCACTTAT......................................................................................................................................................................................................................................171.000.00----------------------------------------------------------------------------------------------------------1.00-----------------------
..............................................................................................................................................................................................................................TAAAAGAGGAGGTACAGCTGACCAT...251.000.00-------------------------------------------------------------1.00--------------------------------------------------------------------
..............................................................................................................................................................................ACTGGCTTCTGACCCTGGTCCA......................................................221.000.00--------------------------------------------------------------------------------------------------------------1.00-------------------
..................................................................................................................................................................................GCTTCTGACCCTGGTCCCTCAGTT................................................241.000.00-1.00--------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CTTCTGACCCTGGTCCCTCAGTTT...............................................2411.001.00----------------------------------------------------1.00-----------------------------------------------------------------------------
........................................................................................................................................TCCTCTGGGGGAAAGGTAGATCTGT.........................................................................................2511.001.00-1.00--------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................GCTTCTGACCCTGGTCCCTCAGT.................................................231.000.00-------------------------------------------------------------------------1.00--------------------------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTGAA........................................................................................2311.0013.00-------------------------------------------------------------------------------------------------------------------------1.00--------
................................................................................................................................................................................................................................AAAGAGGAGGTACAGCTGACCAGCAA2611.001.00-------------------------------------------------------------------------------1.00--------------------------------------------------
........................................................................................................................................TCCTCTGGGGGAAAGGTA................................................................................................1811.001.00-----------------------------------------------1.00----------------------------------------------------------------------------------
....................................................................................................GCTGGCTTACAATTCTGGA...................................................................................................................................1911.001.00-------------------------------1.00--------------------------------------------------------------------------------------------------
.........................................................................................................................................................AGATCTGCCTGTGGATGTAGAACTGGCTT....................................................................2911.001.00----------------------------------------------------------------------------------1.00-----------------------------------------------
.............................................................................................................................................TGGGGGAAAGGTAGATCTGCT........................................................................................2111.001.00-1.00--------------------------------------------------------------------------------------------------------------------------------
...................................................................GGTGGGCTTGGGGGCCCGGAC..................................................................................................................................................................211.000.00---------------------------------------------------------1.00------------------------------------------------------------------------
...............................................................................................................................GGCTTTCTTTCCTCTGGGGGAAAGGTAGATCTGCCTGTGGATGTAGAACTGGCTTCTGACCCTGGTCCCTCAG..................................................7311.001.00------------------------------------------1.00---------------------------------------------------------------------------------------
............................................................................................................................................CTGGGGGAAAGGTAGATCTGCCTGTGGATG................................................................................3011.001.00-----------------------------1.00----------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................AGGCATAAAAGAGGAGGTACAGCT.........2411.001.00----------------------------------------------------------------------------------------------------------------------------1.00-----
..............................................................................................................................................................................................................................TAAAAGAGGAGGTACAGCT.........1911.001.00-------------------1.00--------------------------------------------------------------------------------------------------------------
.............................................................................................................................................TGGGGGAAAGGTAGATCTGCCTG......................................................................................2311.001.00-------------------------1.00--------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................AGGAGGTACAGCTGAAAA....181.000.00-------------------------------------------------------------------------------------------------------1.00--------------------------
...................................................................................................................................................................................CTTCTGACCCTGGTCCCTCAG..................................................2111.001.00------------------------------------------------------------------------------------------------------------------1.00---------------
............................................................................................................................................................................................................TAAAGAAAAAGAAAGGCATAAAA.......................2311.001.00-------------1.00--------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTGCCTGT.....................................................................................2611.001.00----------1.00-----------------------------------------------------------------------------------------------------------------------
...............................................................................................................................GGCTTTCTTTCCTCTGGGGGAAAGGTAGATCTGCCTGTGGATGTAGAACTGGCTTCTGACCCTGGTCCCTCCG..................................................731.000.00------------------------------------------1.00---------------------------------------------------------------------------------------
..........................................................................................TAGACTTGAGGCTGGCTTACAATTC.......................................................................................................................................2511.001.00---------------------1.00------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CTTCTGACCCTGGTCCCTCAGCAT...............................................2411.001.00-1.00--------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCAGCC........................................................................................2311.009.00-------1.00--------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTGCT........................................................................................2311.00107.00-----------------------------------------1.00----------------------------------------------------------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCG...........................................................................................2011.009.00-----------------------------------------------------------1.00----------------------------------------------------------------------
.........................................................................................................................................................................................................AAATAAAGAAAAAGAAAGGCAT...........................2211.001.00----------------------------------------------------------------------------------------------------1.00-----------------------------
......................................................................................................................................................................................CTGACCCTGGTCCCTCAGA.................................................191.000.00--------------------------------1.00-------------------------------------------------------------------------------------------------
.........................................................................................................................................CCTCTGGGGGAAAGGTAGA..............................................................................................1911.001.001.00---------------------------------------------------------------------------------------------------------------------------------
..........................................................TGGATATGTGGTGGGGCTG.............................................................................................................................................................................191.000.00--------------------------------------------------------------------------------------1.00-------------------------------------------
...................................................................................................................................................................................CTTCTGACCCTGGTCCCTCAGTTAA..............................................2511.001.00-1.00--------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGACCT...........................................................................................201.000.00----------------------------------------1.00-----------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................TAAAAGAGGAGGTACAGCTGACCAGCAT2811.001.00--------------------------------------------------1.00-------------------------------------------------------------------------------
.....................................................................................................................................................AGGTAGATCTGCCTGTGGATGTAGAACTGGCT.....................................................................3211.001.001.00---------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................TCCTCTGGGGGAAAGGTAGATC............................................................................................2211.001.00----------------------------1.00-----------------------------------------------------------------------------------------------------
.........................................................................................................................................CCTCTGGGGGAAAGGTAGATCTGC.........................................................................................2411.001.00-1.00--------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................GAACTGGCTTCTGACAT.............................................................171.000.00---------------------------------1.00------------------------------------------------------------------------------------------------
............................................................................................................................................CTGGGGGAAAGGTAGATCTGCCTGT.....................................................................................2511.001.00-------------------------1.00--------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................GGAGGTACAGCTGACCAGCAA2111.001.00---------------------1.00------------------------------------------------------------------------------------------------------------
.........................................................................................................................................CCTCTGGGGGAAAGGTAGATC............................................................................................2111.001.00-------------------------1.00--------------------------------------------------------------------------------------------------------
.............................................................................................................................................TGGGGGAAAGGTAGATCTGC.........................................................................................2011.001.00--------------------------------------1.00-------------------------------------------------------------------------------------------
...............................................................................................TTGAGGCTGGCTTACAATTCTGGA...................................................................................................................................2411.001.00--------------------------------1.00-------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................TAAAAGAGGAGGTACAGCTGACCAGCA.2711.001.00--------------------------------------------------1.00-------------------------------------------------------------------------------
................................................................................................................................................................................TGGCTTCTGACCCTGGTCCCTCCGA.................................................251.000.00------------------------------------------------------------------------------------1.00---------------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTGCCAT......................................................................................2511.0045.00------------------------------------------------------------------------------------------------------------------------------1.00---
...........................................................................................................................................................................AGAACTGGCTTCTGACCC.............................................................1820.500.50---------------------------0.50------------------------------------------------------------------------------------------------------
............................................................................................................................................CTGGGGGAAAGGTAGATCT...........................................................................................1920.500.50---------------------------------------------------------------------------------------------------------------------------------0.50
.............................................................................................................................................................................................................AAAGAAAAAGAAAGGCATA..........................1930.330.33----------0.33-----------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................CTGCCTGTGGATGTAG.............................................................................1650.200.20----------------------------0.20-----------------------------------------------------------------------------------------------------
.................................................................................................................................................................CTGTGGATGTAGAAC..........................................................................1580.120.12------0.12---------------------------------------------------------------------------------------------------------------------------

Antisense strand
TTACTGCTCTCTCCACTTTGAAGGCACCTGGTGGCTGTGGCCTTTATAGGGGTTACCATGGATATGTGGTGGGCTTGGGGGCCCTGGTCCTAGACTTGAGGCTGGCTTACAATTCTGGAAGCCAGGGGGCTTTCTTTCCTCTGGGGGAAAGGTAGATCTGCCTGTGGATGTAGAACTGGCTTCTGACCCTGGTCCCTCAGGAAATAAAGAAAAAGAAAGGCATAAAAGAGGAGGTACAGCTGACCAGCAA
............................................................................................................................................((((((((.(((((((...(((.((.........)).))).))))..)))..))))))))..................................................
......................................................................................................................................135..............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		mjLiverWT2()
Liver Data. (liver)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR553582(SRX182788)
source: Brain. (Brain)		mjLiverKO2()
Liver Data. (Zcchc11 liver)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesWT4()
Testes Data. (testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjTestesWT3()
Testes Data. (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR073954(GSM629280)
total RNA. (blood)		mjTestesWT2()
Testes Data. (testes)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR206940(GSM723281)
other. (brain)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR553584(SRX182790)
source: Heart. (Heart)		mjLiverWT3()
Liver Data. (liver)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR077865(GSM637802)
18-30 nt small RNAs. (liver)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		GSM509276(GSM509276)
small RNA cloning by length. (testes)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		GSM416732(GSM416732)
MEF. (cell line)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR095853(SRX039174)
"sequencing of miRNA from wild type and disea. (heart)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR525238(SRA056111/SRX170314)
Second IgG control. (Blood)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR206942(GSM723283)
other. (brain)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR306528(GSM750571)
19-24nt. (ago2 brain)
........................................................................................................................................................................................GACCCTGGTCCCTCAGA................................................. 171.000.00----------------------------------------1.00-----------------------------------------------------------------------------------------
.......................................................................................................................................................GTAGATCTGCCTGTGAGAG................................................................................ 191.000.00--------------------------------------------------------------------------------------------------------------------------------1.00-
........................................................................................................................................................................................GACCCTGGTCCCTCATATG............................................... 191.000.00-----------------------------------------------------------------------------1.00----------------------------------------------------
..........................................................TGGATATGTGGTGGGCAGT............................................................................................................................................................................. 191.000.00-----------------------------------------------------------------------------------------------1.00----------------------------------