ID: uc008wwz.29
GENE: Cad(30)
chr5:31375597-31375913+


(1)
AGO.mut 		(9)
AGO2.ip 		(2)
AGO3.ip 		(7)
B-CELL 		(17)
BRAIN 		(3)
CELL-LINE 		(13)
EMBRYO 		(11)
ESC 		(2)
FIBROBLAST 		(1)
HEART 		(1)
KIDNEY 		(4)
LIVER 		(1)
LUNG 		(2)
LYMPH 		(12)
OTHER 		(4)
OTHER.mut 		(1)
OVARY 		(3)
PIWI.ip 		(2)
PIWI.mut 		(2)
SKIN 		(7)
SPLEEN 		(18)
TESTES 		(2)
THYMUS 		(1)
TOTAL-RNA 		(1)
UTERUS

Sense strand
AGCTGACCCAGCGTCCAGTGCACATATGTCATGTGGCTCGGAAGGAAGAGGTGAGAGTGCATCAGAGCTCCTGGTACCCCTGTCACTTTCCCAGGAAGACCAGAGGTTACTGACTGTCCTTGGAGGCAGGAAGGGGTGGGAGAGCCCAAGGCCAGTACCTTTGGCACATTTGGCCCTCGCTGTTCTGAGAAAGAATGCCAAGCATAGAGACGGAAGGGCAGGGCATGTCACGTCGGGGACCTCCTGTGAATTGTCCTCTCTCCCCAGATCCTGTTGATTAAAACTGCAAAGGCGCAGGGGCTGCCAGTGACCTGTGA
...................................................................................................................................................................................................................((.((((.((((((..(((((..(((....))))))))..)))))))))).)).....................................................
.............................................................................................................................................................................................................206..........................................................267................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR073954(GSM629280)
total RNA. (blood)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR206941(GSM723282)
other. (brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR206940(GSM723281)
other. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR065046(SRR065046)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR014234(GSM319958)
Ovary total. (ovary)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		mjLiverWT3()
Liver Data. (liver)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR553586(SRX182792)
source: Testis. (testes)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR060845(GSM561991)
total RNA. (brain)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
......................................................................................................................................................................................................................................................TGAATTGTCCTCTCTCCCCAGT.................................................22144.007.004.00---2.00-6.002.00------1.00-2.003.00---2.001.00----3.00------2.00---2.00--2.00-2.00----1.00--1.00---------1.00---------------1.00----1.00----1.00---1.00---1.00-1.00-1.00------
.................................................................................................................................................................................................................................TGTCACGTCGGGGACACCA.........................................................................1913.000.00-------3.00---1.00-2.00-----2.00----------1.00------1.00----------------------1.00-----1.00--------------1.00------------------------
......................................................................................................................................................................................................................................................TGAATTGTCCTCTCTCCCCAG..................................................2117.007.003.00-------------------1.00------------1.00--------------------------------------1.00-------------1.00-------------------
...............................................................................................................................................................................................................................CATGTCACGTCGGGGTCA............................................................................1825.002.50-----------2.50------1.50----------------------------0.50--------------------------------------------------------0.50-
.....................................................................................................................................................................................................................................................GTGAATTGTCCTCTCTCCCCAGA.................................................2315.005.00------------5.00---------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................TGAATTGTCCTCTCTCCCCA...................................................2014.004.001.00-------------3.00-------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................TGAATTGTCCTCTCTCCCCAGA.................................................2214.004.001.00---1.00-----------1.00------------------------------------------------1.00----------------------------------------
..................................................................................................................................................................................................................................GTCACGTCGGGGACCCCA.........................................................................184.000.00---------1.001.00---------------------------------------------1.00-1.00-----------------------------------------------
......................CATATGTCATGTGGCTCGGAAGGAAG.............................................................................................................................................................................................................................................................................2614.004.00--1.00------------1.00--------2.00---------------------------------------------------------------------------------
.................................TGGCTCGGAAGGAAGAG...........................................................................................................................................................................................................................................................................1714.004.00-3.00------------------------------------------1.00-------------------------------------------------------------
.....................ACATATGTCATGTGGCTCGGAAGGA...............................................................................................................................................................................................................................................................................2513.003.00--2.00-----------------------------------------------------------------------------1.00-------------------------
...............................TGTGGCTCGGAAGGAAGAGATCC.......................................................................................................................................................................................................................................................................233.000.00-3.00--------------------------------------------------------------------------------------------------------
...........................GTCATGTGGCTCGGAAGGAAGAGAT.........................................................................................................................................................................................................................................................................2513.001.00----2.00----------------------------------------1.00------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................AAAACTGCAAAGGCGCAGGGGCT...............2313.003.00----------2.00-----------------------------------------------------1.00-----------------------------------------
..........................TGTCATGTGGCTCGGAAGGAAGAGATC........................................................................................................................................................................................................................................................................273.000.00-----1.00---------------------------------1.00-------------------------------1.00----------------------------------
.....................ACATATGTCATGTGGCTCGGAAGGAA..............................................................................................................................................................................................................................................................................2613.003.00--3.00-------------------------------------------------------------------------------------------------------
..............................ATGTGGCTCGGAAGGAAGAG...........................................................................................................................................................................................................................................................................2013.003.00-2.00-----------------------------1.00--------------------------------------------------------------------------
..........................TGTCATGTGGCTCGGAAGGAAGAGATCC.......................................................................................................................................................................................................................................................................283.000.00-2.00-1.00------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................CATGTCACGTCGGGGACACCA.........................................................................213.000.00-----------1.00-1.00-------------------------------------------------------------------------------1.00------------
...............................................................................................................................................................................................................................CATGTCACGTCGGGG...............................................................................1522.502.50-----------------------2.50----------------------------------------------------------------------------------
...............................................................................................................................................................................................................................CATGTCACGTCGGGGTCAC...........................................................................1922.502.50-----------0.50-------0.50-------------1.00---------------------------------------------------------------------0.50--
........................TATGTCATGTGGCTCGGAAGGAAGAGA..........................................................................................................................................................................................................................................................................2712.001.00---1.00-1.00----------------------------------------------------------------------------------------------------
.........................ATGTCATGTGGCTCGGAAGGAAGA............................................................................................................................................................................................................................................................................2412.002.00---------------------------------------------1.00-----------------------------1.00------------------------------
......................CATATGTCATGTGGCTCGGAAGGAAGA............................................................................................................................................................................................................................................................................2712.002.00--1.00-------------------------------------1.00-----------------------------------------------------------------
............................................................................................................................................................................................................................................................................................TGCAAAGGCGCAGGGGCTGCCAGTGAC......2712.002.00----------------------1.00-----------------------------------------------1.00-----------------------------------
................................GTGGCTCGGAAGGAAGAGAT.........................................................................................................................................................................................................................................................................2012.002.00----1.00----------------------------------------------------------------1.00------------------------------------
............................TCATGTGGCTCGGAAGGAAGAGA..........................................................................................................................................................................................................................................................................232.000.001.00-------------------------------------------------------------------------------------------------1.00-------
................................GTGGCTCGGAAGGAAGAG...........................................................................................................................................................................................................................................................................1812.002.00---1.00-------------------------------------------------------------------------------1.00----------------------
.......................ATATGTCATGTGGCTCGGAAGGAAGAGATCC.......................................................................................................................................................................................................................................................................312.000.00---1.00-------------------------------1.00----------------------------------------------------------------------
.....................ACATATGTCATGTGGCTCGGAAGG................................................................................................................................................................................................................................................................................2412.002.00--------2.00-------------------------------------------------------------------------------------------------
..........................TGTCATGTGGCTCGGAAGGAAGAGA..........................................................................................................................................................................................................................................................................252.000.00-----2.00----------------------------------------------------------------------------------------------------
.........................ATGTCATGTGGCTCGGAAGG................................................................................................................................................................................................................................................................................2012.002.00-------------------------------1.00----------------------1.00---------------------------------------------------
...........................................................................................................................................................................................................................................................................ATCCTGTTGATTAAAACTGCAAAGGCGC......................2812.002.00--------2.00-------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................CATGTCACGTCGGGGTC.............................................................................1721.502.50----------------1.00------0.50----------------------------------------------------------------------------------
.................................................................................................................................................................................................................................TGTCACGTCGGGG...............................................................................1341.501.50----------------------------------------------1.50-----------------------------------------------------------
.......................ATATGTCATGTGGCTCGGAAGGAAGT............................................................................................................................................................................................................................................................................261.000.00---------------------------------------------------------1.00------------------------------------------------
..................................................................................................................................................................................................................CGGAAGGGCAGGGCATGTCACG.....................................................................................2211.001.00--------------------------------------------------------------------------------------------1.00-------------
........................TATGTCATGTGGCTCGGAAGGAAGAG...........................................................................................................................................................................................................................................................................2611.001.00---------------------------------------1.00------------------------------------------------------------------
........................TATGTCATGTGGCTCGGA...................................................................................................................................................................................................................................................................................1811.001.00--------------------------------1.00-------------------------------------------------------------------------
................................................................................................................ACTGTCCTTGGAGGCAGAAGG........................................................................................................................................................................................211.000.00-------------------------------------------------------------------------1.00--------------------------------
..........................................AGGAAGAGGTGAGAGCTCG................................................................................................................................................................................................................................................................191.000.00-------------------------------------------------1.00--------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................GCTGCCAGTGACCTGTGA1811.001.00--------1.00-------------------------------------------------------------------------------------------------
.............................CATGTGGCTCGGAAGGAATT............................................................................................................................................................................................................................................................................201.000.00---------------1.00------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................ACGGAAGGGCAGGGCATGTCACGT....................................................................................2411.001.00------------------------------------------------------------------------------------------------1.00---------
......................................................................................................................................................................................................................................................TGAATTGTCCTCTCTCCCCAGTTT...............................................2411.007.00----------------------------------------1.00-----------------------------------------------------------------
............................................................................................................................................................................................................................................................................TCCTGTTGATTAAAACTGC..............................1911.001.00---1.00------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................ATTGTCCTCTCTCCCCAG..................................................1811.001.00----------------------------1.00-----------------------------------------------------------------------------
................................GTGGCTCGGAAGGAAGAGATCC.......................................................................................................................................................................................................................................................................2211.002.00-----------------------------------------------------------------------------------------------------1.00----
..................................................................................................................................................................................................................CGGAAGGGCAGGGCATGTCACGTCGGG................................................................................2711.001.00--1.00-------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................GAATTGTCCTCTCTCCCCAGT.................................................211.000.00-------------------------------------------------------------------------------------1.00--------------------
.........................................................................................................................................................................................................................................................ATTGTCCTCTCTCCCCAGT.................................................1911.001.00--------------------------------------------------------------------1.00-------------------------------------
..........................TGTCATGTGGCTCGGAAGGAAGA............................................................................................................................................................................................................................................................................2311.001.00-------------------------1.00--------------------------------------------------------------------------------
.......................ATATGTCATGTGGCTCGGAAGGAAGA............................................................................................................................................................................................................................................................................2611.001.00----------------------------------------------------1.00-----------------------------------------------------
.................................TGGCTCGGAAGGAAGAGATC........................................................................................................................................................................................................................................................................2011.004.00----------------------------1.00-----------------------------------------------------------------------------
......................................................................................................................................................................................................................................................TGAATTGTCCTCTCTCCCCAGTAA...............................................2411.007.00-------1.00--------------------------------------------------------------------------------------------------
...................................GCTCGGAAGGAAGAGATC........................................................................................................................................................................................................................................................................181.000.00------------------------------------1.00---------------------------------------------------------------------
............................TCATGTGGCTCGGAATTT...............................................................................................................................................................................................................................................................................181.000.00--------------------------------1.00-------------------------------------------------------------------------
...........................GTCATGTGGCTCGGAAGGAAGA............................................................................................................................................................................................................................................................................2211.001.00--------------------------------------------------------------------------1.00-------------------------------
.............................................................................................................................................................................................................................................................................................GCAAAGGCGCAGGGGCTGCCAGT.........2311.001.00-------------------------1.00--------------------------------------------------------------------------------
..............................ATGTGGCTCGGAAGGAAGATTTT........................................................................................................................................................................................................................................................................231.000.00---------1.00------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................GCAGGGGCTGCCAGTGACA.....191.000.00---------1.00------------------------------------------------------------------------------------------------
................................GTGGCTCGGAAGGAAGAGATC........................................................................................................................................................................................................................................................................2111.002.00--------------------------------------------------------------1.00-------------------------------------------
................................................................................................................ACTGTCCTTGGAGGCAGCGA.........................................................................................................................................................................................201.000.00------------------1.00---------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................TGCAAAGGCGCAGGGGCTGCCAG..........2311.001.00----------1.00-----------------------------------------------------------------------------------------------
..................................................GTGAGAGTGCATCAGAGCTCCTGGTA.................................................................................................................................................................................................................................................2611.001.00------------------------------------------------------------------------------1.00---------------------------
...............................TGTGGCTCGGAAGGAAGAGA..........................................................................................................................................................................................................................................................................201.000.00----1.00-----------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................AGGCGCAGGGGCTGCCAGTGAC......2211.001.00-----1.00----------------------------------------------------------------------------------------------------
..............................ATGTGGCTCGGAAGGAAGAGAT.........................................................................................................................................................................................................................................................................2211.003.00----1.00-----------------------------------------------------------------------------------------------------
..........................TGTCATGTGGCTCGGAAGGAAGAGAT.........................................................................................................................................................................................................................................................................261.000.00---1.00------------------------------------------------------------------------------------------------------
..............................ATGTGGCTCGGAAGGAAG.............................................................................................................................................................................................................................................................................1811.001.00-----------------------------------1.00----------------------------------------------------------------------
................................................................................................................................................................................................................GACGGAAGGGCAGGGCATGTC........................................................................................2111.001.00-----------------------------------------------------------------------------------------1.00----------------
......................................................................................................................................................................................................................................................TGAATTGTCCTCTCTCCCC....................................................1911.001.00-----------------1.00----------------------------------------------------------------------------------------
......................CATATGTCATGTGGCTCGGAAGGAAGAG...........................................................................................................................................................................................................................................................................2811.001.00----------------------1.00-----------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................TGAATTGTCCTCTCTCCCCAGTATT..............................................2511.007.00------------------------------------------------------------------------------------1.00---------------------
...............................TGTGGCTCGGAAGGAAGAGAT.........................................................................................................................................................................................................................................................................211.000.00--------------------------1.00-------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................TGAATTGTCCTCTCTCCCCAGC.................................................2211.007.001.00---------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................AGCATAGAGACGGAAGGGCAGGGG.............................................................................................241.000.00----------------------------------------------------------------------------1.00-----------------------------
......................................................................................................................................................................................................................................................TGAATTGTCCTCTCTCCCCAGTA................................................2311.007.00--------------------------------------------1.00-------------------------------------------------------------
................................................................................................................................................................................................................GACGGAAGGGCAGGGCATGT.........................................................................................2011.001.00----------------------------------------------------------------------------------------------1.00-----------
.....................................................................................................................................................................................................................................................................................................GCAGGGGCTGCCAGTGACCTGTGA2411.001.00------------------------------------1.00---------------------------------------------------------------------
..............................ATGTGGCTCGGAAGGAAGATTT.........................................................................................................................................................................................................................................................................221.000.00---------1.00------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................AAAACTGCAAAGGCGCAGGGGC................2211.001.00--------------------1.00-------------------------------------------------------------------------------------
................................................................................................................................................................................................................................ATGTCACGTCGGGGACACCC.........................................................................201.000.00-------------------------------------1.00--------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................GCAAAGGCGCAGGGGCTGCC............2011.001.00---------------------------------------------------------------1.00------------------------------------------
.................................................................................................................................................................................................................................TGTCACGTCGGGGACAACA.........................................................................191.000.00-------------------1.00--------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................TGAATTGTCCTCTCTCCCCAGTAAT..............................................2511.007.00--------------------------------------------------1.00-------------------------------------------------------
................................................................................................................................................................................................................................ATGTCACGTCGGGGACTCCT.........................................................................201.000.00---------------------1.00------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................CGCAGGGGCTGCCAGTG........1711.001.00-----1.00----------------------------------------------------------------------------------------------------
..................................GGCTCGGAAGGAAGAGAT.........................................................................................................................................................................................................................................................................181.000.00---------------1.00------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................TGAATTGTCCTCTCTCCCCAT..................................................2111.004.001.00---------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................AAAGGCGCAGGGGCTGCCAGT.........2111.001.00----------------------------------------------------------------------------------------1.00-----------------
.........AGCGTCCAGTGCACATTTTT................................................................................................................................................................................................................................................................................................201.000.00----------------------------------------------------------------------------------------------------1.00-----
.................................TGGCTCGGAAGGAAGA............................................................................................................................................................................................................................................................................1611.001.00------------------------------------------1.00---------------------------------------------------------------
.................................................................................................................................................................................................................ACGGAAGGGCAGGGCTGGG.........................................................................................191.000.00-----------------------------1.00----------------------------------------------------------------------------
....................CACATATGTCATGTGGCTCGGAAGGAA..............................................................................................................................................................................................................................................................................2711.001.00--------------------------1.00-------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................ATCCTGTTGATTAAAACTGCAAAGGCGCAGGGGC................3411.001.001.00---------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................TGAATTGTCCTCTCTCCCCAAA.................................................2211.004.00------------------------------1.00---------------------------------------------------------------------------
................................................................................................................ACTGTCCTTGGAGGCAGAAG.........................................................................................................................................................................................201.000.00-------------------------------------------------------------------1.00--------------------------------------
.......................ATATGTCATGTGGCTCGGAAGGAA..............................................................................................................................................................................................................................................................................2411.001.00---------1.00------------------------------------------------------------------------------------------------
..................................GGCTCGGAAGGAAGAGATC........................................................................................................................................................................................................................................................................191.000.00---------------1.00------------------------------------------------------------------------------------------
...........................GTCATGTGGCTCGGAAGGAAGAG...........................................................................................................................................................................................................................................................................2311.001.00-------------------------1.00--------------------------------------------------------------------------------
...........................................................................................................................................................................................AGAAAGAATGCCAAGCATAGAGACGG........................................................................................................2611.001.00---1.00------------------------------------------------------------------------------------------------------
.............................CATGTGGCTCGGAAGGAAGAGA..........................................................................................................................................................................................................................................................................221.000.00------------------------------------------1.00---------------------------------------------------------------
......................................................................................................................................................................................................................................................TGAATTGTCCTCTCTCCCCTGT.................................................2211.001.00-----------------------------------------------------1.00----------------------------------------------------
.......................ATATGTCATGTGGCTCGGAA..................................................................................................................................................................................................................................................................................2011.001.00-------------------------------------------------------1.00--------------------------------------------------
........................TATGTCATGTGGCTCGGAAGGAAGA............................................................................................................................................................................................................................................................................2511.001.00---1.00------------------------------------------------------------------------------------------------------
...............................TGTGGCTCGGAAGGAAG.............................................................................................................................................................................................................................................................................1711.001.00--------------------1.00-------------------------------------------------------------------------------------
.................................................................................................................................................................................................................ACGGAAGGGCAGGGCATGTCA.......................................................................................2111.001.00-----------------------------------------------------------1.00----------------------------------------------
......................CATATGTCATGTGGCTCGGAAGGA...............................................................................................................................................................................................................................................................................2411.001.00-------------1.00--------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................TTAAAACTGCAAAGGCGCAGGGGCTGCCA...........2911.001.00--------------------------1.00-------------------------------------------------------------------------------
....................CACATATGTCATGTGGCTCGGAAGGA...............................................................................................................................................................................................................................................................................2611.001.00------------------------1.00---------------------------------------------------------------------------------
...........................................................................................................................AGGCAGGAAGGGGTGCTGG...............................................................................................................................................................................191.000.00-----------------------------1.00----------------------------------------------------------------------------
...............................................................................................................................................................................................................................CATGTCACGTCGGGGTCCA...........................................................................1920.502.50------------------------------------------------------------------------------------------------------0.50---
................................................................................................................................................................................................................................ATGTCACGTCGGG................................................................................1370.430.43----------------------------------------------0.43-----------------------------------------------------------
................................................................................................................ACTGTCCTTGGAGGCA.............................................................................................................................................................................................1630.330.33---------------------------------------------------------------------------------------------------------0.33
....................................................................................................................................................................................................................................CACGTCGGGGAC.............................................................................12100.300.30------------------0.20------------------------------0.10--------------------------------------------------------
...........................................................................................................................................................................................................................................................................................CTGCAAAGGCGCAGG...................1540.250.25------------------------------------------------0.25---------------------------------------------------------
...................................................................................................................................................................................................................................TCACGTCGGGGAC.............................................................................1340.250.25-----------------------------0.25----------------------------------------------------------------------------

Antisense strand
AGCTGACCCAGCGTCCAGTGCACATATGTCATGTGGCTCGGAAGGAAGAGGTGAGAGTGCATCAGAGCTCCTGGTACCCCTGTCACTTTCCCAGGAAGACCAGAGGTTACTGACTGTCCTTGGAGGCAGGAAGGGGTGGGAGAGCCCAAGGCCAGTACCTTTGGCACATTTGGCCCTCGCTGTTCTGAGAAAGAATGCCAAGCATAGAGACGGAAGGGCAGGGCATGTCACGTCGGGGACCTCCTGTGAATTGTCCTCTCTCCCCAGATCCTGTTGATTAAAACTGCAAAGGCGCAGGGGCTGCCAGTGACCTGTGA
...................................................................................................................................................................................................................((.((((.((((((..(((((..(((....))))))))..)))))))))).)).....................................................
.............................................................................................................................................................................................................206..........................................................267................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR073954(GSM629280)
total RNA. (blood)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR206941(GSM723282)
other. (brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR206940(GSM723281)
other. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR065046(SRR065046)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR014234(GSM319958)
Ovary total. (ovary)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		mjLiverWT3()
Liver Data. (liver)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR553586(SRX182792)
source: Testis. (testes)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR060845(GSM561991)
total RNA. (brain)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
........................................................................................................................................................................................................................................................AATTGTCCTCTCTCCCCAGATCCTGTT.......................................... 2711.001.00-----------------------------------------------1.00----------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................GCTGCCAGTGACCTGTTC 181.000.00-------------------------------------------------------------------------------1.00--------------------------
......................................................................................................................................................................................................................................................TGAATTGTCCTCTCTAGAT.................................................... 191.000.00----------1.00-----------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................TCCCCAGATCCTGTTGAT....................................... 1811.001.00------------------------------------------------------------------------------------------1.00---------------
............................................................................................................................................AGAGCCCAAGGCCAGTGAAA............................................................................................................................................................. 201.000.00------------------1.00---------------------------------------------------------------------------------------
.............................................................................................................CTGACTGTCCTTGGAGG............................................................................................................................................................................................... 1720.500.50----------------------------0.50-----------------------------------------------------------------------------