ID: uc008wwz.19
GENE: Cad(20)
chr5:31370911-31371096+


(1)
AGO1.ip 		(7)
AGO2.ip 		(1)
AGO3.ip 		(2)
B-CELL 		(19)
BRAIN 		(4)
CELL-LINE 		(1)
DCR.mut 		(2)
DGCR8.mut 		(8)
EMBRYO 		(7)
ESC 		(2)
FIBROBLAST 		(2)
LIVER 		(1)
LYMPH 		(9)
OTHER 		(2)
OTHER.mut 		(1)
PANCREAS 		(3)
PIWI.ip 		(3)
SKIN 		(2)
SPLEEN 		(13)
TESTES 		(3)
TOTAL-RNA

Sense strand
ATACCATCGGTATCAGCCAGCCTCAGTGGCGAGAGCTCAGTGACCTTGAGGTGGGCTGGGGTCTGGCAGGAAGCCGCGGGGCGGATGTCGCTTGTGGGTGAGTGTGAGCACCCCACTGACCCTCCTGTCCCTGCAGTCTGCTCGCCAGTTCTGCCACACGGTCGGGTACCCCTGCGTAGTGCGCCC
..................................................((((((.((((((.((((....(((....)))...))))....(((((...(((....)))))))).))))))...))))..))....................................................
..................................................51...................................................................................136................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		mjTestesWT3()
Testes Data. (testes)		mjTestesWT1()
Testes Data. (testes)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR073954(GSM629280)
total RNA. (blood)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR206940(GSM723281)
other. (brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR346415(SRX098256)
source: Testis. (Testes)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		mjTestesWT4()
Testes Data. (testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR073955(GSM629281)
total RNA. (blood)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)
..................................................................................................................ACTGACCCTCCTGTCCCTGCAG..................................................22152.0052.0020.006.00-3.00--4.003.00-1.00---3.001.00----2.00-1.00-2.00-----1.001.00-----------1.001.00--------------1.00----1.00------------
..................................................................................................................ACTGACCCTCCTGTCCCTGCAGT.................................................23139.0039.007.001.00-----2.004.001.002.001.00--2.003.001.002.00---1.00--2.00-1.002.002.00---------------1.00-------1.00------1.00------1.001.00--------
..................................................................................................................ACTGACCCTCCTGTCCCTGCAGA.................................................23132.0052.008.009.00-3.00--1.00---1.001.001.00---1.00---1.00-1.00--1.00-------1.001.001.00------------1.00---------------------------
.................................................................................................................CACTGACCCTCCTGTCCCTGCAG..................................................2319.009.001.004.00--------------------1.00---1.00-----------------------1.00----1.00--------------------
.........................GTGGCGAGAGCTCAGTGACCTTGAG........................................................................................................................................2517.007.00----7.00-----------------------------------------------------------------------
..................................................................................................................ACTGACCCTCCTGTCCCTGC....................................................2014.004.001.00--2.00----------------1.00-------------------------------------------------------
..................................................GTGGGCTGGGGTCTGGCAGGAAG.................................................................................................................2313.003.00----------------------------------------1.00----1.00---------------1.00--------------
..................................................GTGGGCTGGGGTCTGGCAGGAAGCCGCGGGGCGGATGTCGCTTGTGGGTGAGTGTGAGCACCCCACTGACCCTCCTGTCCCTGCAGA.................................................8713.002.00--3.00-------------------------------------------------------------------------
..................................................................................................................ACTGACCCTCCTGTCCCTGCAAT.................................................2313.002.00-----3.00----------------------------------------------------------------------
.................................................................................................................CACTGACCCTCCTGTCCCTGCAGA.................................................2413.009.001.00-----1.00-------------------------------------------------1.00-------------------
..................................................GTGGGCTGGGGTCTGGCAGGAAGCCGC.............................................................................................................2713.003.00---------------------------------------1.00-----------------1.00-------1.00----------
..................................................GTGGGCTGGGGTCTGGCAGGAAGCCGCGGGGCGGATGTCGCTTGTGGGTGAGTGTGAGCACCCCACTGACCCTCCTGTCCCTGCAGAAAG..............................................9012.002.00--2.00-------------------------------------------------------------------------
..................................................GTGGGCTGGGGTCTGGCAGGAAGCCGCGGGGCGGATGTCGCTTGTGGGTGAGTGTGAGCACCCCACTGACCCTCCTGTCCCTGCAG..................................................8612.002.00--2.00-------------------------------------------------------------------------
..................................................................................................................ACTGACCCTCCTGTCCCTGCA...................................................2112.002.002.00---------------------------------------------------------------------------
........................................................................................................................................................GCCACACGGTCGGGTACCCCTGCGT.........2512.002.00------------1.00------------1.00--------------------------------------------------
....................................................................................................................TGACCCTCCTGTCCCTGCAGT.................................................2112.002.00--------------------------------1.00--------1.00----------------------------------
..................................................GTGGGCTGGGGTCTGGCAGGAAGCCGCGGGGCGGATGTCGCTTGTGGGTGAGTGTGAGCACCCCACTGACCCTCCTGTCCCTGCAGAA................................................8812.002.00--2.00-------------------------------------------------------------------------
.................................................................................................................CACTGACCCTCCTGTCCCTGCAGT.................................................2412.002.00----------------------------------------------1.00-----------------1.00-----------
..................................................................................................................ACTGACCCTCCTGTCCCTGCAGAA................................................2412.0052.002.00---------------------------------------------------------------------------
...................................................TGGGCTGGGGTCTGGACGC....................................................................................................................191.000.00------------------1.00---------------------------------------------------------
..................................................GTGGGCTGGGGTCTGGCAGGAAGCCGCGG...........................................................................................................2911.001.00-------------------------------------1.00--------------------------------------
......................................................................................................................................................CTGCCACACGGTCGGGTAC.................1911.001.00-------------------------------------------------1.00--------------------------
.................................................................................CGGATGTCGCTTGTGGGTGT.....................................................................................201.000.00-----------------------------------------------1.00----------------------------
..................................................GTGGGCTGGGGTCTGGCAGGAAGCCGCGGGGCGG......................................................................................................3411.001.00--1.00-------------------------------------------------------------------------
..................................................................................................................ACTGACCCTCCTGTCCCTGCATT.................................................2311.002.001.00---------------------------------------------------------------------------
...............................................................................................................................................................GGTCGGGTACCCCTGCG..........1711.001.00-----------------1.00----------------------------------------------------------
..................................................................................................................ACTGACCCTCCTGTCCCTGCAGAAT...............................................2511.0052.00---------1.00------------------------------------------------------------------
..................................................................................................................ACTGACCCTCCTGTCCCTGCAGCAT...............................................2511.0052.00---------1.00------------------------------------------------------------------
........................AGTGGCGAGAGCTCAGT.................................................................................................................................................1711.001.00-----------1.00----------------------------------------------------------------
..................................................................................................................ACTGACCCTCCTGTCCCTGCAT..................................................2211.002.00-----1.00----------------------------------------------------------------------
.....................................................................................................................................................TCTGCCACACGGTCGGGTA..................1911.001.00-----1.00----------------------------------------------------------------------
...........................................................................................................................................................ACACGGTCGGGTACCCCTGCGT.........2211.001.00----------1.00-----------------------------------------------------------------
..ACCATCGGTATCAGCCAGC.....................................................................................................................................................................1911.001.00-----------------------------------------------------1.00----------------------
..................................................................................................................ACTGACCCTCCTGTCCCTGCAGAGA...............................................2511.0052.00------------1.00---------------------------------------------------------------
..................................................GTGGGCTGGGGTCTGGCAGGAAGCCGCGGGGCGGATGTCGCTTGTGGGTGAGTGTGAGCACCCCACTGACCCTCCTGTCCCTGCAGAAA...............................................8911.002.00--1.00-------------------------------------------------------------------------
.........................................................................CCGCGGGGCGGATGTCGCTTGTGG.........................................................................................2411.001.00------------------------------------1.00---------------------------------------
..................................................................................................................ACTGACCCTCCTGTCCCTGCACT.................................................2311.002.001.00---------------------------------------------------------------------------
..............................................................................................................CCCCACTGACCCTCCTGTCCCTGCAGAAA...............................................291.000.00--------------------------------------1.00-------------------------------------
..................................................................................................................ACTGACCCTCCTGTCCCTGCCGT.................................................2311.004.00---------------------------------------------------1.00------------------------
.................................................GGTGGGCTGGGGTCTAGG.......................................................................................................................181.000.00----------------1.00-----------------------------------------------------------
...CCATCGGTATCAGCCAGCC....................................................................................................................................................................1911.001.00-------------------------------1.00--------------------------------------------
.....................................................................................................................................................TCTGCCACACGGTCGGGT...................1811.001.00-----------1.00----------------------------------------------------------------
.................................................................................................................CACTGACCCTCCTGTCCCTGCAGTAT...............................................2611.002.00------------------------------------------------------------1.00---------------
..................................................................................................................ACTGACCCTCCTGTCCCTGCAGTAAT..............................................2611.0039.00--------1.00-------------------------------------------------------------------
...........................................................................................................................................................ACACGGTCGGGTACCCC..............1711.001.00-----1.00----------------------------------------------------------------------
...........................................................................................................................................................ACACGGTCGGGTACCCCT.............1811.001.00------------------------------------------------------1.00---------------------
.........................................................................CCGCGGGGCGGAT....................................................................................................1320.500.50--------------------------------------------------------------------0.50-------
................................................................................GCGGATGTCGCTT.............................................................................................1350.400.40------------------0.20---------------------------------------------------0.20-----
..................................................................................................................ACTGACCCTCCTGTCC........................................................1640.250.25---------0.25------------------------------------------------------------------
...................................................TGGGCTGGGGTCTGGC.......................................................................................................................1680.120.12------------------------------------------------------------------------0.12---

Antisense strand
ATACCATCGGTATCAGCCAGCCTCAGTGGCGAGAGCTCAGTGACCTTGAGGTGGGCTGGGGTCTGGCAGGAAGCCGCGGGGCGGATGTCGCTTGTGGGTGAGTGTGAGCACCCCACTGACCCTCCTGTCCCTGCAGTCTGCTCGCCAGTTCTGCCACACGGTCGGGTACCCCTGCGTAGTGCGCCC
..................................................((((((.((((((.((((....(((....)))...))))....(((((...(((....)))))))).))))))...))))..))....................................................
..................................................51...................................................................................136................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		mjTestesWT3()
Testes Data. (testes)		mjTestesWT1()
Testes Data. (testes)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR073954(GSM629280)
total RNA. (blood)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR206940(GSM723281)
other. (brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR346415(SRX098256)
source: Testis. (Testes)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		mjTestesWT4()
Testes Data. (testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR073955(GSM629281)
total RNA. (blood)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)
..............................................................................................................................GTCCCTGCAGTCTGCTCGCC........................................ 2011.001.00--------------------------------------------------------------1.00-------------
...........................................................................................................................................GCTCGCCAGTTCTGCCC.............................. 171.000.00------------------1.00---------------------------------------------------------
............................................................................................................................................CTCGCCAGTTCTGC................................ 1490.440.44---------------------------------------------------------------------0.22---0.110.11-
..............................................................................................................................................CGCCAGTTCTGCCAC............................. 1540.250.25-----------------------------0.25----------------------------------------------
.............................................................................................................................................TCGCCAGTTCTGCC............................... 1460.170.17-----------------------------------------------------------------------0.17----
.............................................................................................................ACCCCACTGACCCTC.............................................................. 15100.100.10---------------------------------------------------------------------------0.10