ID: uc008wwm.4
GENE: Emilin1(4)
chr5:31222104-31222353+


(1)
AGO.mut 		(2)
AGO1.ip 		(4)
AGO2.ip 		(5)
B-CELL 		(6)
BRAIN 		(6)
CELL-LINE 		(2)
DCR.mut 		(1)
DGCR8.mut 		(12)
EMBRYO 		(5)
ESC 		(8)
FIBROBLAST 		(2)
HEART 		(3)
KIDNEY 		(14)
LIVER 		(2)
LUNG 		(4)
LYMPH 		(22)
OTHER 		(9)
OTHER.mut 		(1)
OVARY 		(3)
PIWI.ip 		(3)
PIWI.mut 		(5)
SPLEEN 		(23)
TESTES 		(4)
THYMUS 		(2)
UTERUS

Sense strand
CTGCCGTATTGCAGTTCATGTAGCGTATGAGGAGCTCCTGGCTGAGGCTGTGGTCTAGCATCTGCCCAGACTGGAGCCCACTTACGCTTTTCTTGGCATCACATTCCACACCTAACACCCAGAGCAGTGCAAGAGAGCAGATGTTGGGTGAGGGCATGGTGAGAGATGTCCTATTCACTGTGGTCCCTTTCTTCCAACAGGTCCTCAAGGGGAGCAGGGTAAGTCGTTAGACTCTGGAAGGGGCCAGGAG
..............................................................((((.(((..(((((........)))))))).)))).....((((((.(((..((((((..(((.(((......)))..)))))))))))).....))).))).....................................................................................
.............................................................62......................................................................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		mjTestesWT4()
Testes Data. (testes)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		mjTestesWT3()
Testes Data. (testes)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		mjTestesWT2()
Testes Data. (testes)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		mjLiverWT3()
Liver Data. (liver)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR525239(SRA056111/SRX170315)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR077864(GSM637801)
18-30 nt small RNAs. (liver)		SRR525244(SRA056111/SRX170320)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR065049(SRR065049)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR525241(SRA056111/SRX170317)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR073954(GSM629280)
total RNA. (blood)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR553586(SRX182792)
source: Testis. (testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR037926(GSM510464)
e9p5_rep4. (embryo)		GSM509276(GSM509276)
small RNA cloning by length. (testes)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR014237(GSM319961)
10 dpp MILI-KO total. (mili testes)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (gland)		mjLiverKO2()
Liver Data. (Zcchc11 liver)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR553584(SRX182790)
source: Heart. (Heart)
............................................................................................................................................ATGTTGGGTGAGGGCATGGTGA........................................................................................221158.00158.007.0023.009.006.003.001.004.007.004.002.003.00-3.003.002.002.004.001.002.00-7.004.002.003.002.00-1.00-1.002.002.003.002.00-2.001.003.001.001.001.002.001.004.001.00-2.00---1.001.001.001.00---1.001.00--1.001.001.00---1.002.00-----1.00-1.00-2.001.001.00---1.00-1.00----1.001.00--------1.00----1.00------------------
.............................................................................................................................................TGTTGGGTGAGGGCATGGTGA........................................................................................21184.0084.003.006.005.008.008.005.004.00-1.003.00--4.00-3.003.001.00----1.001.001.003.00-1.00-2.001.00-1.00-----1.001.001.001.00---------1.00-1.00----1.00------2.001.00--2.00--1.00----1.00---1.00-------------1.00--------1.00-------1.00-------1.00----
...........................................................................................................................................GATGTTGGGTGAGGGCATGGTGA........................................................................................23146.0046.003.00-4.001.002.003.00-2.00--1.00--2.00-3.001.004.00---1.001.001.00-1.001.001.00----2.001.00----1.001.00--------1.00--1.00-2.00-2.00---2.00-------------------------------------1.00--------------------------
.............................................................................................................................................TGTTGGGTGAGGGCATGGTGAA.......................................................................................22122.0084.00------------1.00-3.001.001.00--6.00-1.002.00------2.00------1.002.00------------------1.00-------------------------------1.00-----------------------------------
..................................................................CAGACTGGAGCCCACTTACGC...................................................................................................................................................................21115.0015.0011.00---------1.00-----------------------------------------------1.00-----------1.00--------------------------------------1.00--------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTGAT.......................................................................................23114.00158.00-8.002.00-1.001.00---------------------1.00------1.00-----------------------------------------------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTG.........................................................................................21113.0013.00---1.001.00---1.00--------------1.00-1.00------1.00---1.00-1.00--------2.00-1.00-------------------------------------------------1.00--1.00---------------------
...........................TGAGGAGCTCCTGGCTGAGGCTGT.......................................................................................................................................................................................................24111.0011.004.00----1.00--1.00---------1.00-------1.00------2.00-1.00----------------------------------------------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTGT........................................................................................2218.0013.00--1.002.00----1.001.00-----------------1.00---------------------------------1.00---------------------------1.00----------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTGAA.......................................................................................2317.00158.00--2.001.00--1.00-----------1.00------1.00--------------------------------------------------1.00-----------------------------------------------
...........................TGAGGAGCTCCTGGCTGAGGCT.........................................................................................................................................................................................................2216.006.003.00-----------1.00------------------------------2.00--------------------------------------------------------------------------------
..............................................................................................................................................GTTGGGTGAGGGCATGGTGA........................................................................................2016.006.00-----------------1.00----1.00-------1.00--------------------------------------------------1.00--------------1.00-----------------1.00---------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTGAAT......................................................................................2416.00158.00--2.00---1.00----------1.00-----------1.00----------------1.00-----------------------------------------------------------------------------
.............................................................................................................................................TGTTGGGTGAGGGCATGGTG.........................................................................................2015.005.00---1.00-1.00---1.00---------------------1.00-------------------------1.00------------------------------------------------------------------
.............GTTCATGTAGCGTATGAGGAGCTCCTGGCT...............................................................................................................................................................................................................3015.005.00-----------5.00----------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................TTCACTGTGGTCCCTTTCTTCCAAC....................................................2515.005.00-----------5.00----------------------------------------------------------------------------------------------------------------
...........................................................................................................................................GATGTTGGGTGAGGGCATGGTGAT.......................................................................................2415.0046.00---1.00--------------------1.00----------3.00----------------------------------------------------------------------------------------
..................................................................CAGACTGGAGCCCACTTACGCTTT................................................................................................................................................................2415.005.004.00---------1.00-----------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................TATTCACTGTGGTCCCTTTCTTCCA......................................................2514.004.00--------------------------------------------4.00-------------------------------------------------------------------------------
...........................................................................................................................................GATGTTGGGTGAGGGCATGGTG.........................................................................................2214.004.00---1.00---2.00------------------------------------------1.00-------------------------------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTGAAAT.....................................................................................2513.00158.00----------------------------1.00-----------------1.00----------------1.00------------------------------------------------------------
...........................................................................................................................................GATGTTGGGTGAGGGCATGGTGAA.......................................................................................2413.0046.00--1.00-1.00--1.00--------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................TGTTGGGTGAGGGCATGGTGAT.......................................................................................2213.0084.00--1.00-1.00----1.00------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................TGTTGGGTGAGGGCATGGTGAAT......................................................................................2313.0084.00-----3.00----------------------------------------------------------------------------------------------------------------------
...........................TGAGGAGCTCCTGGCTGAGGC..........................................................................................................................................................................................................2113.003.001.00-----------------1.00--------------1.00------------------------------------------------------------------------------------------
..........................................................................................................................................AGATGTTGGGTGAGGGCATGGTGA........................................................................................2413.003.00------------------------------1.00--------------1.00-------1.00----------------------------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTGATT......................................................................................2413.00158.00--1.00--------------------------------------1.00---------------------------------------------------1.00------------------------------
...........................................................................................................................................GATGTTGGGTGAGGGCATGGT..........................................................................................2113.003.00--------1.00-----1.00-------------------------------------1.00-----------------------------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTGTAT......................................................................................2413.0013.00--1.00-------------------------------------------1.00-------------------------------1.00---------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGGGA........................................................................................223.000.00-1.00------------------------------------------------------------1.00------------------------------------------------------1.00------
.............................................................................................................................................TGTTGGGTGAGGGCATGGTGAAA......................................................................................2312.0084.00------1.00-------------------------------------------------1.00-------------------------------------------------------------------
....................................................................GACTGGAGCCCACTTACGCTT.................................................................................................................................................................2112.002.00----------------------------------------------------------1.00-------------------------------------------------1.00---------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTGAAC......................................................................................2412.00158.002.00---------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................GATGTTGGGTGAGGGCATGGTGT........................................................................................2312.004.00----1.00----1.00------------------------------------------------------------------------------------------------------------------
..................................................................CAGACTGGAGCCCACTTACG....................................................................................................................................................................2012.002.00----------1.00----------------------------------------------------------------1.00------------------------------------------------
...........................TGAGGAGCTCCTGGCTGAGGCTG........................................................................................................................................................................................................2312.002.00-------------------------1.00----------------------------1.00---------------------------------------------------------------------
..................................................................CAGACTGGAGCCCACTTACGCT..................................................................................................................................................................2212.002.00--------------------------------------------------------------------------2.00-------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTAA........................................................................................2212.002.00-------------2.00--------------------------------------------------------------------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGT..........................................................................................2012.002.00--------1.00-------------------------------------------------1.00-----------------------------------------------------------------
...........................TGAGGAGCTCCTGGCTGAGG...........................................................................................................................................................................................................2012.002.001.00------------------------------------------1.00--------------------------------------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTGTTAT.....................................................................................2512.0013.00---------------------------------------------------------------------------------------1.00----------------------------1.00-------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTGATTAT....................................................................................2612.00158.00------------------------------------------------------------------------2.00---------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTTA........................................................................................2212.002.00---------------------------1.00-------------------------------------1.00----------------------------------------------------------
.............................................................................................................................................TGTTGGGTGAGGGCATGGTGT........................................................................................2112.005.00--1.00--------------------1.00----------------------------------------------------------------------------------------------------
............................................................................................................................................................................ATTCACTGTGGTCCCTTTC...........................................................1912.002.00-----2.00----------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................TCACTGTGGTCCCTTTCTTCCAAC....................................................2412.002.00------------------------------------------------------2.00---------------------------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTT.........................................................................................2112.002.00---1.00------------------------------1.00-----------------------------------------------------------------------------------------
.................................................................CCAGACTGGAGCCCACTTACGT...................................................................................................................................................................221.000.001.00---------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTGAAG......................................................................................2411.00158.00---1.00------------------------------------------------------------------------------------------------------------------------
.......................................GGCTGAGGCTGTGGTAGTA................................................................................................................................................................................................191.000.00--------------------------------------------------------------------------------------------1.00-------------------------------
.........................TATGAGGAGCTCCTGGCTGAG............................................................................................................................................................................................................2111.001.00-------------------------------------1.00--------------------------------------------------------------------------------------
...........................TGAGGAGCTCCTGGCTGAGGCTGAT......................................................................................................................................................................................................2511.002.00------------------1.00---------------------------------------------------------------------------------------------------------
.............................................................................................................................................TGTTGGGTGAGGGCATGGTGAACT.....................................................................................2411.0084.00----------------------------1.00-----------------------------------------------------------------------------------------------
.............................................................................................................................................TGTTGGGTGAGGGCATGGTGTAAT.....................................................................................2411.005.00----1.00-----------------------------------------------------------------------------------------------------------------------
....................................................................GACTGGAGCCCACTTACGCTTAT...............................................................................................................................................................2311.002.00--------------------------1.00-------------------------------------------------------------------------------------------------
.............................................................................................................................................TGTTGGGTGAGGGCATGGT..........................................................................................1911.001.00----------------1.00-----------------------------------------------------------------------------------------------------------
.........................TATGAGGAGCTCCTGGCTGAGGT..........................................................................................................................................................................................................2311.001.00--------------------------1.00-------------------------------------------------------------------------------------------------
..................................................................CAGACTGGAGCCCACTTACGCTT.................................................................................................................................................................2311.001.00--------1.00-------------------------------------------------------------------------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTGATAT.....................................................................................2511.00158.00---------------------------------------------------1.00------------------------------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTGAAA......................................................................................2411.00158.00--1.00-------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGGG.........................................................................................211.000.00----------1.00-----------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................ACTGTGGTCCCTTTCTTCCAACAGT.................................................251.000.00-----------------------------------------------1.00----------------------------------------------------------------------------
.............................................................................................................................................TGTTGGGTGAGGGCATGGTGAAAT.....................................................................................2411.0084.00-----------------1.00----------------------------------------------------------------------------------------------------------
........................................................................................................................................GCAGATGTTGGGTGAAC.................................................................................................171.000.00----------------1.00-----------------------------------------------------------------------------------------------------------
..........................................................................................................................................AGATGTTGGGTGAGGGCATGGTAT........................................................................................241.000.00-----------------------------------------1.00----------------------------------------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATTTT..........................................................................................201.000.00--------------------------------------------------------------------------------------1.00-------------------------------------
............................GAGGAGCTCCTGGCTGAGGCT.........................................................................................................................................................................................................2111.001.001.00---------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GGTCCTCAAGGGGAGCAGGGA..............................211.000.00---------------------------------------1.00------------------------------------------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTGAG.......................................................................................2311.001.00----------------------------------------1.00-----------------------------------------------------------------------------------
...........................................................................................................................................GATGTTGGGTGAGGGCAT.............................................................................................1811.001.00---------1.00------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................GATGTTGGGTGAGGGCATGGGGG........................................................................................231.000.00---------------------------------------------------------------1.00------------------------------------------------------------
....................................................................................................................................................................................................................................AGACTCTGGAAGGGGCCAGG..2011.001.00-------------1.00--------------------------------------------------------------------------------------------------------------
.....................................CTGGCTGAGGCTGTGGACGC.................................................................................................................................................................................................201.000.00----------------------------------------------------------------------------------------------------------------------1.00-----
...........................TGAGGAGCTCCTGGCTGAGGCAT........................................................................................................................................................................................................2311.003.001.00---------------------------------------------------------------------------------------------------------------------------
.........................TATGAGGAGCTCCTGGCTGAGG...........................................................................................................................................................................................................2211.001.00------------------1.00---------------------------------------------------------------------------------------------------------
...........................................................................................................................................GATGTTGGGTGAGGGCATGGTGAATT.....................................................................................2611.0046.00-------------------1.00--------------------------------------------------------------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTTAT.......................................................................................2311.002.00---------------------------1.00------------------------------------------------------------------------------------------------
...........................................................................................................................................GATGTTGGGTGAGGGCATGGTGATT......................................................................................2511.0046.00--1.00-------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................ACTGTGGTCCCTTTCTTCCAAC....................................................2211.001.00-----------------------------------------------------------------------------------------------------1.00----------------------
.............................................................................................................................................TGTTGGGTGAGGGCATGGTAA........................................................................................2111.001.00---1.00------------------------------------------------------------------------------------------------------------------------
....................TAGCGTATGAGGAGCTCCTGG.................................................................................................................................................................................................................2111.001.00-----------------------------------------------------------------------------------------------------------------1.00----------
..........................................................................................................................................AGATGTTGGGTGAGGGCATGGTA.........................................................................................231.000.00-------------------------1.00--------------------------------------------------------------------------------------------------
.....................................................................ACTGGAGCCCACTTACGCTT.................................................................................................................................................................2011.001.00------------------------------------------------------------------------------------1.00---------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGCGA........................................................................................221.000.00----------------------------------------------------------------------------------------------------------------1.00-----------
..........................ATGAGGAGCTCCTGGCTGAGGC..........................................................................................................................................................................................................2211.001.001.00---------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTGAAAAT....................................................................................2611.00158.00------1.00---------------------------------------------------------------------------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTA.........................................................................................2111.002.00------------------------------------------------------------------1.00---------------------------------------------------------
...........................................................................................................................................GATGTTGGGTGAGGGCATGGTGAAA......................................................................................2511.0046.00--------1.00-------------------------------------------------------------------------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTGTAA......................................................................................2411.0013.00----1.00-----------------------------------------------------------------------------------------------------------------------
........TTGCAGTTCATGTAGAG.................................................................................................................................................................................................................................171.000.00-----------------------------------------------------------------------1.00----------------------------------------------------
.....................................CTGGCTGAGGCTGTGGAG...................................................................................................................................................................................................181.000.00----------------------------------------------------------------------1.00-----------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGCGC........................................................................................221.000.00-------------------------------------------------------------------------1.00--------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTAAAT......................................................................................2411.002.00--------1.00-------------------------------------------------------------------------------------------------------------------
...........................TGAGGAGCTCCTGGCTGAGGCTGTTT.....................................................................................................................................................................................................2611.0011.00------------------------------------------------1.00---------------------------------------------------------------------------
.............................................................................................................................................TGTTGGGTGAGGGCATGTTGA........................................................................................211.000.00-------------------------------------------------------1.00--------------------------------------------------------------------
...........................................................................................................................................GATGTTGGGTGAGGGCATGGTGAAAA.....................................................................................2611.0046.001.00---------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTGAAGA.....................................................................................2511.00158.00---------------------------------------------------------------------1.00------------------------------------------------------
..........................................................................................................................................AGATGTTGGGTGAGGGCATGGTGAA.......................................................................................2511.003.00---------------------------------------------------------------------1.00------------------------------------------------------
...............................................................................................................................TGCAAGAGAGCAGATGTTGGGTGAGGG................................................................................................2711.001.00----------1.00-----------------------------------------------------------------------------------------------------------------
...........................................................................................................................................GATGTTGGGTGAGGGCATGGTGAAAT.....................................................................................2611.0046.00------------------------------------------------1.00---------------------------------------------------------------------------
...................................................................................................................................................GTGAGGGCATGGTGAAA......................................................................................171.000.00--------------------------------------------------------------------------------------------------------1.00-------------------
.............................................................................................................................................TGTTGGGTGAGGGCATGGTTA........................................................................................2111.001.00-----1.00----------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................ACTGTGGTCCCTTTCTTCCAACAGA.................................................251.000.00---------------------------------1.00------------------------------------------------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTAT........................................................................................2211.002.00---------------------------1.00------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................TCTTCCAACAGGTCCTCAAGGGGAGCAGG................................2911.001.00----------------------------1.00-----------------------------------------------------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTGAC.......................................................................................2311.00158.00--1.00-------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................TGTTGGGTGAGGGCATGGTGTTG......................................................................................2311.005.00----1.00-----------------------------------------------------------------------------------------------------------------------
....................................................................GACTGGAGCCCACTTACGCTTT................................................................................................................................................................2211.001.00------------------------------1.00---------------------------------------------------------------------------------------------
..................................CTCCTGGCTGAGGCTCTG......................................................................................................................................................................................................181.000.00----------------------------------------------------------------------------------------------------------1.00-----------------
.................................................................................................................................................GGGTGAGGGCATGGTAAA.......................................................................................181.000.00------------------------------1.00---------------------------------------------------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTAAT.......................................................................................2311.002.00--------------------------------------------------------------------------------------------------------------1.00-------------
...........................................................................................................................................GATGTTGGGTGAGGGCATGGTTT........................................................................................2311.003.00--1.00-------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTGAGA......................................................................................2411.001.00----------1.00-----------------------------------------------------------------------------------------------------------------
.............................................................................................................................................TGTTGGGTGAGGGCATGGTGATAAA....................................................................................2511.0084.00----------------------------------------------------------------------------------1.00-----------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTGAGT......................................................................................2411.001.00----------------------------------1.00-----------------------------------------------------------------------------------------
....................................................................................................................................................................GATGTCCTATTCACTGTGGTCCCTT.............................................................2511.001.00-------------1.00--------------------------------------------------------------------------------------------------------------
...............TCATGTAGCGTATGAGGAGCTCCTGGC................................................................................................................................................................................................................2711.001.00-------------------------------------------------1.00--------------------------------------------------------------------------
...........................TGAGGAGCTCCTGGCTGAGGCTTA.......................................................................................................................................................................................................2411.006.00------------------1.00---------------------------------------------------------------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTGTT.......................................................................................2311.0013.00--1.00-------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................TGTTGGGTGAGGGCATGGAA.........................................................................................201.000.00-----------------------------------------1.00----------------------------------------------------------------------------------
....................................................................GACTGGAGCCCACTTACGCTTTT...............................................................................................................................................................2311.001.00--------------------------------------------------------------------------------------------------1.00-------------------------
................................................................................................................................................TGGGTGAGGGCATGGTGAT.......................................................................................191.000.00------1.00---------------------------------------------------------------------------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCATGGTGATTT.....................................................................................2511.00158.00---1.00------------------------------------------------------------------------------------------------------------------------
..........................ATGAGGAGCTCCTGGCTGAGGCTG........................................................................................................................................................................................................2411.001.00-------------------------1.00--------------------------------------------------------------------------------------------------
............................................................................................................................................ATGTTGGGTGAGGGCA..............................................................................................1620.500.50------------------------------------------------------------------------------------------------------------------------0.50---

Antisense strand
CTGCCGTATTGCAGTTCATGTAGCGTATGAGGAGCTCCTGGCTGAGGCTGTGGTCTAGCATCTGCCCAGACTGGAGCCCACTTACGCTTTTCTTGGCATCACATTCCACACCTAACACCCAGAGCAGTGCAAGAGAGCAGATGTTGGGTGAGGGCATGGTGAGAGATGTCCTATTCACTGTGGTCCCTTTCTTCCAACAGGTCCTCAAGGGGAGCAGGGTAAGTCGTTAGACTCTGGAAGGGGCCAGGAG
..............................................................((((.(((..(((((........)))))))).)))).....((((((.(((..((((((..(((.(((......)))..)))))))))))).....))).))).....................................................................................
.............................................................62......................................................................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		mjTestesWT4()
Testes Data. (testes)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		mjTestesWT3()
Testes Data. (testes)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		mjTestesWT2()
Testes Data. (testes)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		mjLiverWT3()
Liver Data. (liver)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR525239(SRA056111/SRX170315)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR077864(GSM637801)
18-30 nt small RNAs. (liver)		SRR525244(SRA056111/SRX170320)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR065049(SRR065049)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR525241(SRA056111/SRX170317)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR073954(GSM629280)
total RNA. (blood)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR553586(SRX182792)
source: Testis. (testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR037926(GSM510464)
e9p5_rep4. (embryo)		GSM509276(GSM509276)
small RNA cloning by length. (testes)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR014237(GSM319961)
10 dpp MILI-KO total. (mili testes)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (gland)		mjLiverKO2()
Liver Data. (Zcchc11 liver)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR553584(SRX182790)
source: Heart. (Heart)
...............................GAGCTCCTGGCTGAGGCTGTGGTCTAGCA.............................................................................................................................................................................................. 2911.001.00------1.00---------------------------------------------------------------------------------------------------------------------
....................................................................................................ACATTCCACACCTAATTGT................................................................................................................................... 191.000.00-------------------------------------------------------------------------------------------------------------------1.00--------
.............................................................CTGCCCAGACTGGAGCGC........................................................................................................................................................................... 181.000.00-------1.00--------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................CTTCCAACAGGTCCTCTG.......................................... 181.000.00-----------------------------------------------------------------------------------------------1.00----------------------------
....................................................................................................................................................................................................................AGCAGGGTAAGTCGTTAGTTC................. 211.000.00-----------------------------------------------------------------------------------------------------------1.00----------------
.............................................................................CCACTTACGCTTTTCTTGGCATCACA................................................................................................................................................... 2611.001.00------------------------------------------------------------1.00---------------------------------------------------------------
.......................................................................TGGAGCCCACTTACG.................................................................................................................................................................... 1520.500.50-----0.50----------------------------------------------------------------------------------------------------------------------
................................................................................................................................GCAAGAGAGCAGATGT.......................................................................................................... 1650.200.20-------------------------------------------------------------------------------------------------------------------------0.20--
..............................................................................................................................................................................TCACTGTGGTCCCTTT............................................................ 1670.140.14-------------------------------0.14--------------------------------------------------------------------------------------------
.........................................................................................................CCACACCTAACACCC.................................................................................................................................. 1590.110.11---------------------------------------------------------------------------------------------------------------------------0.11
...............................................................................ACTTACGCTTTTCT............................................................................................................................................................. 1490.110.11--------------------------------------------------------------------------------------------------------------------------0.11-