ID: uc008wfu.3
GENE: Tnfrsf4(4)
chr4:155389512-155390036+


(1)
AGO.mut 		(1)
AGO1.ip 		(3)
AGO2.ip 		(1)
AGO3.ip 		(2)
B-CELL 		(6)
BRAIN 		(1)
CELL-LINE 		(1)
DCR.mut 		(2)
EMBRYO 		(2)
FIBROBLAST 		(3)
LIVER 		(5)
LYMPH 		(7)
OTHER 		(1)
OTHER.mut 		(1)
PIWI.ip 		(1)
PIWI.mut 		(3)
SKIN 		(6)
SPLEEN 		(5)
TESTES

Sense strand
CCTGGCCACTTTTCTCCAGGCAACAACCAGGCCTGCAAGCCCTGGACCAAGTGAGTACTGTGGCTGGCTAGGGGTATGGAGGGAATGGGACCAGAGGGTTTGGGCATTTAAGCGGTGCTATCTAGATGACTGTGATGGACTGGATAAGAAAGCCCTGTGCTTAGGGCATCTGACATCTGACATCACGAACACCAACACAGGCTCTACTGTGCAAGGGGCCCCTGCAGATTGAGAGGGGCATGTGAGATCCAAGCCCAGGCCCAGGGACATGTTTGTTCTCACATTGTAGTTCTTCTCCAGGGGGCTACAGAAGTATAGGGTAGGGGTTTGAAAGGGCAGAACCCCAGCCAGGAGCAGGCCAGGGATGAAAACAGGGTGAAGACAGACGCAGACATAGGTACCTGCCTTGTGGGTGGAAGTCTTGGCAGAACTGAAGATGGCTCAGTGCAACTTCCAACACTGTCTCGTCCCACAGTTGTACCTTATCTGGAAAGCAGACCCGCCACCCAGCCAGTGACAGCTTGG
.......................................................................................................................................................................................................................................................................................................................................................................................................................(((((((((((((.((((.((.(((((.......)))))....)).)))).))).)).)).))))))...................................................
..................................................................................................................................................................................................................................................................................................................................................................................................................403.....................................................................475................................................
SizePerfect hitTotal NormPerfect NormSRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR073954(GSM629280)
total RNA. (blood)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR073955(GSM629281)
total RNA. (blood)		mjTestesWT3()
Testes Data. (testes)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR059771(GSM562833)
CD4_control. (spleen)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		GSM475281(GSM475281)
total RNA. (testes)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR553586(SRX182792)
source: Testis. (testes)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)
.......................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGTGGAAGTCTTGGCAG.................................................................................................21110.0010.003.00-1.002.00----1.001.00---1.00-------1.00--------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGTGGAAGTCTTGGCA..................................................................................................2013.003.001.00-1.001.00--------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGTGGAAGTCTTGGCAGT................................................................................................2213.0010.00-------1.00-1.00-------1.00------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGTGGAAGTCTTGGCAA.................................................................................................2113.003.00--2.00----------------------------------1.00----
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAACACTGTCTCGTCCCACA...................................................2213.003.00----1.00-------2.00-----------------------------
..............TCCAGGCAACAACCATTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................182.000.00------------------1.00-------------1.00---------
.......................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGTGGAAGTCTTGGCAGA................................................................................................2212.002.00----1.00---------------------1.00---------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAACACTGTCTCGTCCCA.....................................................2112.002.00----2.00-------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGGTGGAAGTCTTGGCAG.................................................................................................2212.002.002.00-----------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAACACTGTCTCGTCCCACAGC.................................................242.000.00-----------2.00------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGGAAGTCTTGGCA..................................................................................................1911.001.00-------------1.00----------------------------
.................................TGCAAGCCCTGGACCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00-1.00----------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGGTGGAAGTCTTGGCAGA................................................................................................2311.001.001.00-----------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAACACTGTCTCGTCCCACAGT.................................................2411.001.00---------------------------------1.00--------
.......................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGTGGAAGTCTTGGAA..................................................................................................201.000.001.00-----------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGGTGGAAGTCTTGGC...................................................................................................2011.001.001.00-----------------------------------------
................CAGGCAACAACCAGGCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00---------------------------------------1.00--
......................ACAACCAGGCCTGCACAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-----------------------1.00------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGTGGAAGTCTTGGC...................................................................................................1911.001.00---1.00--------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGGCAGAACTGAAGATGGCTCAGTGC.............................................................................2911.001.00----------------------------1.00-------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGTGGAAGTCTTGTCAA.................................................................................................211.000.00-------1.00----------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTACCTTATCTGGAAAGCAGACCCGCC.....................2911.001.00------1.00-----------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGGTGGAAGTCTTGGCAAG................................................................................................231.000.001.00-----------------------------------------
..................................................GTGAGTACTGTGGCTGGCTAGGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................241.000.00------------------------------------1.00-----
................................CTGCAAGCCCTGGACCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-------------------1.00----------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGGTGGAAGTCTTGGCAGTT...............................................................................................2411.002.001.00-----------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTACCTTATCTGGAAAGCAGACCCGC......................2811.001.00------1.00-----------------------------------
..........................................TGGACCAAGTGAGTATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00----------------1.00-------------------------
............................................................................................................................................................................................................................................................................................................................................................................ATGAAAACAGGGTGAAAGAA.............................................................................................................................................201.000.00----------------------------------------1.00-
................................CTGCAAGCCCTGGACCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00----------1.00-------------------------------
.................................................................................................................................................................................TGACATCACGAACACACT..........................................................................................................................................................................................................................................................................................................................................181.000.00-----1.00------------------------------------
.............................................................................................................................................................................................................................................................CCCAGGCCCAGGGACATG..............................................................................................................................................................................................................................................................1811.001.001.00-----------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGGTGGAAGTCTTGGCAT.................................................................................................221.000.00---1.00--------------------------------------
..........................................TGGACCAAGTGAGTACGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00--------------1.00---------------------------
.....................................................................................................................................................................................................CAGGCTCTACTGTGCCCG......................................................................................................................................................................................................................................................................................................................181.000.00----------1.00-------------------------------
.....................................................................................................................................................................................................CAGGCTCTACTGTGCCTA......................................................................................................................................................................................................................................................................................................................181.000.00-1.00----------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAACACTGTCTCGTCCCACAGA.................................................241.000.00-------------------------------1.00----------
.......................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGTGGAAGTCTTGGCAT.................................................................................................2111.003.001.00-----------------------------------------
..............TCCAGGCAACAACCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00-1.00----------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................GATGAAAACAGGGTGAAGA...............................................................................................................................................1911.001.00----------------------1.00-------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGTGGAAGTCTTGGCAGTAT..............................................................................................2411.0010.00-------1.00----------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGGTGGAAGTCTTGGCAAAT...............................................................................................241.000.00-----------------------------------------1.00
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAACACTGTCTCGTCCCACAA..................................................2311.003.00--1.00---------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAACTGAAGATGGCTGTGG...............................................................................211.000.00--------------------1.00---------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCTTATCTGGAAAGCAGACCCGCCA....................2711.001.00-----------------------------1.00------------
......................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGGTGGAAGTCTTGGCAAA................................................................................................231.000.001.00-----------------------------------------
............................................................................................................................................................................................................................................................................................................................AGGGTAGGGGTTTGAAATT..............................................................................................................................................................................................191.000.00------------------------1.00-----------------
........................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGGAAGTCTTGGG...................................................................................................181.000.00--------------------------------------1.00---
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTACCTTATCTGGAAAGCAGACCCG.......................2711.001.00------1.00-----------------------------------
.....................................................................................................................................................................................................................................................................................................TCTCCAGGGGGCTACAGAAGTA..................................................................................................................................................................................................................2211.001.00--------1.00---------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCAGAACTGAAGGCA......................................................................................181.000.00-----1.00------------------------------------
..............................................................................................................................TGACTGTGATGGACTGGATAAGAAAGCCCTGTGCTTAGGGCATCTGACATCTGACA.......................................................................................................................................................................................................................................................................................................................................................5611.001.00-----------------------------------1.00------
....................................................................................................................................................................................................................................................................................................................................................ACCCCAGCCAGGAGCGCA.......................................................................................................................................................................181.000.00-------------------------1.00----------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGACCCGCCACCC.................1530.330.33--------------0.33---------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAACTGAAGATGGC....................................................................................1640.250.25---------------0.25--------------------------

Antisense strand
CCTGGCCACTTTTCTCCAGGCAACAACCAGGCCTGCAAGCCCTGGACCAAGTGAGTACTGTGGCTGGCTAGGGGTATGGAGGGAATGGGACCAGAGGGTTTGGGCATTTAAGCGGTGCTATCTAGATGACTGTGATGGACTGGATAAGAAAGCCCTGTGCTTAGGGCATCTGACATCTGACATCACGAACACCAACACAGGCTCTACTGTGCAAGGGGCCCCTGCAGATTGAGAGGGGCATGTGAGATCCAAGCCCAGGCCCAGGGACATGTTTGTTCTCACATTGTAGTTCTTCTCCAGGGGGCTACAGAAGTATAGGGTAGGGGTTTGAAAGGGCAGAACCCCAGCCAGGAGCAGGCCAGGGATGAAAACAGGGTGAAGACAGACGCAGACATAGGTACCTGCCTTGTGGGTGGAAGTCTTGGCAGAACTGAAGATGGCTCAGTGCAACTTCCAACACTGTCTCGTCCCACAGTTGTACCTTATCTGGAAAGCAGACCCGCCACCCAGCCAGTGACAGCTTGG
.......................................................................................................................................................................................................................................................................................................................................................................................................................(((((((((((((.((((.((.(((((.......)))))....)).)))).))).)).)).))))))...................................................
..................................................................................................................................................................................................................................................................................................................................................................................................................403.....................................................................475................................................
SizePerfect hitTotal NormPerfect NormSRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR073954(GSM629280)
total RNA. (blood)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR073955(GSM629281)
total RNA. (blood)		mjTestesWT3()
Testes Data. (testes)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR059771(GSM562833)
CD4_control. (spleen)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		GSM475281(GSM475281)
total RNA. (testes)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR553586(SRX182792)
source: Testis. (testes)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGCTCAGTGCAGG.......................................................................... 171.000.00---------------------------1.00--------------
......................................................................................................................................................................................................................................................................................................CTCCAGGGGGCTACACAGG.................................................................................................................................................................................................................... 191.000.00-1.00----------------------------------------
......................................................................................................................................................................................................................................................ATCCAAGCCCAGGCCCT...................................................................................................................................................................................................................................................................... 171.000.00-1.00----------------------------------------
.....................................................................................................................................................................GCATCTGACATCTGATGA...................................................................................................................................................................................................................................................................................................................................................... 181.000.00---------------1.00--------------------------
...........................................................................................................................................................................................AACACCAACACAGGCGGT................................................................................................................................................................................................................................................................................................................................ 181.000.00------------------------------1.00-----------
...........................................................................................................................................CTGGATAAGAAAGCCGACC............................................................................................................................................................................................................................................................................................................................................................................... 191.000.00-----1.00------------------------------------
.........................................................................................................................................................................................................................................................................................CATTGTAGTTCTTCTCCAGATA.............................................................................................................................................................................................................................. 221.000.00----------------------------------1.00-------