ID: uc008wai.15
GENE: Chd5(16)
chr4:151744702-151744886+


(8)
AGO2.ip 		(23)
BRAIN 		(2)
CELL-LINE 		(1)
DCR.mut 		(1)
DGCR8.mut 		(2)
EMBRYO 		(6)
ESC 		(1)
HEART 		(6)
OTHER 		(2)
OTHER.mut 		(1)
PIWI.mut 		(1)
SPLEEN 		(6)
TESTES

Sense strand
CCTGCCTCGTGGTGGACGAGGCCCACCGGCTCAAGAACAACCAGTCCAAGGTAGGAGGCACCGGCCGTGGGGCTTATCCCGCTGGGCATGGCCACGGCTCTGTGCCTCCTCACACCCCATCTCTTCTCCCCAAAGTTCTTTAGGGTCTTGAATAGCTACAAGATCGACTACAAGCTGCTGCTGAC
..................................................(((((((((((.((((((((.(((((......)))))....))))))))..))))))))).))........................................................................
..................................................51................................................................117..................................................................
SizePerfect hitTotal NormPerfect NormSRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR206940(GSM723281)
other. (brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR206939(GSM723280)
other. (brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR206942(GSM723283)
other. (brain)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR206941(GSM723282)
other. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR037904(GSM510440)
brain_rep1. (brain)		GSM475281(GSM475281)
total RNA. (testes)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR073955(GSM629281)
total RNA. (blood)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
..................................................GTAGGAGGCACCGGCCGTGGGGCT...............................................................................................................24113.0013.001.001.002.00--1.001.00---2.00----1.001.00-------1.00----1.00----------1.00------
..................................................GTAGGAGGCACCGGCCGTGG...................................................................................................................20112.0012.003.001.00-1.00-1.00-1.00---1.00-1.00---1.001.001.00---------------------------
..................................................GTAGGAGGCACCGGCCGTGGGGC................................................................................................................23111.0011.002.00-2.003.00-1.00----------------1.00--------------1.001.00--------
..................................................GTAGGAGGCACCGGCCGTGGG..................................................................................................................2118.008.00-1.001.001.00-1.00----1.00---2.00-------------1.00------------------
..................................................GTAGGAGGCACCGGCCGTGTAG.................................................................................................................2215.001.00----5.00------------------------------------------
...........................................................................................CCACGGCTCTGTGCCTCCTCAC........................................................................2213.003.00--------3.00--------------------------------------
..................................................GTAGGAGGCACCGGCCGTGGAA.................................................................................................................2213.0012.00-1.00-------1.00----------------------------------1.00--
..................................................GTAGGAGGCACCGGCCGTGGA..................................................................................................................2113.0012.002.00------1.00---------------------------------------
..................................................GTAGGAGGCACCGGCCGTGGGGA................................................................................................................2312.001.00-1.00---------1.00-----------------------------------
..................................................GTAGGAGGCACCGGCCGTGGGA.................................................................................................................2212.008.001.00------------------------------------------1.00---
..................................................GTAGGAGGCACCGGCCGTGGGTAA...............................................................................................................2412.008.00--2.00--------------------------------------------
..................................................GTAGGAGGCACCGGCCGTGGAAT................................................................................................................2312.0012.00-1.00-------1.00-------------------------------------
...........................................................................................CCACGGCTCTGTGCCTCCTCA.........................................................................2112.002.00--------------------------------1.00---------1.00----
..................................................GTAGGAGGCACCGGCCGTG....................................................................................................................1911.001.00------------------------------------1.00----------
..................................................GTAGGAGGCACCGGCCGTGGGGCTA..............................................................................................................2511.0013.00------1.00----------------------------------------
..................................................GTAGGAGGCACCGGCCGTGGGG.................................................................................................................2211.001.00---------------------1.00-------------------------
....................................................................................................................................................TGAATAGCTACAAGATCT...................181.000.00---------------------------------------1.00-------
.........................................................GCACCGGCCGTGGGGCT...............................................................................................................1711.001.00-------------------------1.00---------------------
..................................................GTAGGAGGCACCGGCCGTGGGGAT...............................................................................................................2411.001.00------------------1.00----------------------------
..................................................GTAGGAGGCACCGGCCGTTG...................................................................................................................201.000.00--------------------1.00--------------------------
..................................................GTAGGAGGCACCGGCCGTGGGGCTTTT............................................................................................................271.000.00---------------1.00-------------------------------
..................................................GTAGGAGGCACCGGCCGTGGGGCA...............................................................................................................2411.0011.00-1.00---------------------------------------------
.............................................................................................................................................................ACAAGATCGACTACAAGCTGCTGCTGAC2811.001.00-------------------------------1.00---------------
..................................................GTAGGAGGCACCGGCCGTGGT..................................................................................................................2111.0012.00-----------1.00-----------------------------------
..................................................GTAGGAGGCACCGGCCGTGGTAGA...............................................................................................................2411.0012.00---1.00-------------------------------------------
............................................................................................................................................................TACAAGATCGACTACAAGCTGCTG.....2411.001.00--------------------------1.00--------------------
............................GCTCAAGAACAACCAGTCCAAGTT.....................................................................................................................................241.000.00-------------1.00---------------------------------
..................................................GTAGGAGGCACCGGCCGTGGGTTT...............................................................................................................2411.008.00-----------------1.00-----------------------------
..................AGGCCCACCGGCTCAAGA.....................................................................................................................................................1811.001.00-----------------------1.00-----------------------
..................................................GTAGGAGGCACCGGCCGTGGGGG................................................................................................................2311.001.00---------------------------------1.00-------------
..................................................GTAGGAGGCACCGGCCGTGA...................................................................................................................2011.001.00-------1.00---------------------------------------
........................ACCGGCTCAAGAACAACCAGA............................................................................................................................................211.000.00-----------------------------------------1.00-----
..................................................GTAGGAGGCACCGGCCGTGGTTAT...............................................................................................................2411.0012.00---------1.00-------------------------------------
..................................................GTAGGAGGCACCGGCCGTGGAT.................................................................................................................2211.0012.00------1.00----------------------------------------
.........................................................................................................................................CTTTAGGGTCTTGAATAGCTACAAG.......................2511.001.00----------------1.00------------------------------
.............................CTCAAGAACAACCAGTCCAAG.......................................................................................................................................2120.500.50---------------------------------------------0.50-
.................................AGAACAACCAGTCCAAG.......................................................................................................................................1760.170.17----------------------------------------------0.17

Antisense strand
CCTGCCTCGTGGTGGACGAGGCCCACCGGCTCAAGAACAACCAGTCCAAGGTAGGAGGCACCGGCCGTGGGGCTTATCCCGCTGGGCATGGCCACGGCTCTGTGCCTCCTCACACCCCATCTCTTCTCCCCAAAGTTCTTTAGGGTCTTGAATAGCTACAAGATCGACTACAAGCTGCTGCTGAC
..................................................(((((((((((.((((((((.(((((......)))))....))))))))..))))))))).))........................................................................
..................................................51................................................................117..................................................................
SizePerfect hitTotal NormPerfect NormSRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR206940(GSM723281)
other. (brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR206939(GSM723280)
other. (brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR206942(GSM723283)
other. (brain)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR206941(GSM723282)
other. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR037904(GSM510440)
brain_rep1. (brain)		GSM475281(GSM475281)
total RNA. (testes)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR073955(GSM629281)
total RNA. (blood)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
.................................................................................................................ACCCCATCTCTTCTCAAC...................................................... 181.000.00-----------------------------------1.00-----------
................................................................................................GCTCTGTGCCTCCTCATA....................................................................... 181.000.00------------1.00----------------------------------
........................................................................................................CCTCCTCACACCCCATGA............................................................... 181.000.00----------------------------------1.00------------
...................................................................................GGGCATGGCCACGGCTTC.................................................................................... 181.000.00------------------------------1.00----------------
....................................................................................................................................AAGTTCTTTAGGGTCTGTAG................................. 201.000.00------------1.00----------------------------------
.........................................................................................................................................................................ACAAGCTGCTGCTGATCCC 191.000.00---------------------------1.00-------------------