ID: uc008vns.31
GENE: Crocc(5)
chr4:140602563-140602736-


(4)
AGO1.ip 		(7)
AGO2.ip 		(1)
AGO3.ip 		(4)
B-CELL 		(33)
BRAIN 		(3)
CELL-LINE 		(2)
DCR.mut 		(2)
DGCR8.mut 		(9)
EMBRYO 		(6)
ESC 		(1)
FIBROBLAST 		(2)
KIDNEY 		(2)
LIVER 		(1)
LUNG 		(2)
LYMPH 		(13)
OTHER 		(7)
OTHER.mut 		(3)
PIWI.ip 		(2)
PIWI.mut 		(4)
SKIN 		(4)
SPLEEN 		(23)
TESTES 		(2)
THYMUS 		(1)
UTERUS

Sense strand
AGAAGCAGCTGATGGACAGGTCTACTGAACTGGAGCAGCAGCGACTGAGGGTGGGTGACAGGGTGGGGCAGGCGTAGACCTTCCTGCCTCTGCTCTCCTCCTGACGCCCCTCCTCCTCACCTAGGACACAGAACACAGCCAGGACCTGGACAGCGCTCTTCTGCGCCTAGAGGA
....................................................(((((.(((((.((((((((.((((......)))).))))).))).))))).))))).................................................................
..................................................51.........................................................110..............................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR206940(GSM723281)
other. (brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesWT4()
Testes Data. (testes)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR206939(GSM723280)
other. (brain)		SRR060845(GSM561991)
total RNA. (brain)		SRR206941(GSM723282)
other. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR023847(GSM307156)
mESv6.5smallrna_rep1. (cell line)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesWT3()
Testes Data. (testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR206942(GSM723283)
other. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR042453(GSM539845)
mouse marginal zone B cells (spleen) [09-002]. (b cell)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR525240(SRA056111/SRX170316)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		GSM361399(GSM361399)
CGNP_P6_p53--_Ink4c--_rep2. (brain)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR525241(SRA056111/SRX170317)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR553586(SRX182792)
source: Testis. (testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		mjTestesWT2()
Testes Data. (testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR037906(GSM510442)
brain_rep3. (brain)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		GSM361394(GSM361394)
CGNP_P6_wt_rep1. (brain)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
....................................................................................TGCCTCTGCTCTCCTCCTGACG....................................................................221139.00139.0021.0013.0013.004.008.002.007.007.006.006.004.005.00--2.003.00-1.00-1.00-2.003.001.002.001.00----1.00--2.00-4.00--2.00--1.001.00--1.00----2.00-------1.001.002.001.002.001.00--1.00-------------------1.00------------1.001.00-----1.00---
....................................................................................TGCCTCTGCTCTCCTCCTGACGC...................................................................23172.0072.0045.003.00-2.002.004.00---1.00------2.001.00-----2.00-----3.00-------------1.00------1.00---------------1.00---1.001.00----1.00----------------1.00----------------
....................................................................................TGCCTCTGCTCTCCTCCTGACGT...................................................................23128.00139.006.001.001.002.00---1.00---2.00----------2.00--------1.00---------1.001.00------2.00-----------1.00---2.00-------------------1.00-1.00---1.00--1.00-------1.00-------
....................................................................................TGCCTCTGCTCTCCTCCTGAC.....................................................................21117.0017.004.003.00-1.001.001.00--1.00-------1.00--1.00-1.00---------------------------1.00------------------1.00------------------------------------1.00----
....................................................................................TGCCTCTGCTCTCCTCCTGA......................................................................20112.0012.005.002.00-1.00--1.00---1.00--------------1.00-------1.00----------------------------------------------------------------------------
....................................................................................TGCCTCTGCTCTCCTCCTGACGA...................................................................23112.00139.002.00-------1.00--1.00------1.00------1.00----1.00---------------2.00-----3.00---------------------------------------------------------
....................................................................................TGCCTCTGCTCTCCTCCTGACA....................................................................22110.0017.001.001.001.00----1.00-1.00-----1.00--1.00--1.00-1.00-1.00------------------------------------------------------------------------------------
........................................................................................TCTGCTCTCCTCCTGACG....................................................................1819.009.00-1.00--------------------------------4.00----1.00-1.00-------------2.00------------------------------------------------------
....................................................................................TGCCTCTGCTCTCCTCCTGACT....................................................................2217.0017.002.001.001.00-------1.00----------------------1.00---1.00------------------------------------------------------------------------
.....................................................................................................................................CACAGCCAGGACCTGGACAGC....................2116.006.00-------------6.00------------------------------------------------------------------------------------------------
....................................................................................TGCCTCTGCTCTCCTCCTGGT.....................................................................2126.001.504.00---------------1.00---------1.00-----------------------------------------------------------------------------------
.........................TGAACTGGAGCAGCAGCG...................................................................................................................................1816.006.00------------6.00-------------------------------------------------------------------------------------------------
.................................AGCAGCAGCGACTGAGG............................................................................................................................1716.006.00---------------------------2.00----4.00-----------------------------------------------------------------------------
....................................................................................TGCCTCTGCTCTCCTCCTGTGT....................................................................2225.001.505.00-------------------------------------------------------------------------------------------------------------
........................................................................................TCTGCTCTCCTCCTGACGCT..................................................................2014.004.00-------------------------------3.00-----------------------------------------------------------------------1.00------
....................................................................................TGCCTCTGCTCTCCTCCTGAA.....................................................................2114.0012.002.00--------------------1.00--------------------------1.00-------------------------------------------------------------
.......................................................................GCGTAGACCTTCCTGCC......................................................................................1714.004.00-1.00--------1.00--------1.00------------------1.00-----------------------------------------------------------------------
........................................................................................TCTGCTCTCCTCCTGACGC...................................................................1914.004.00--------------------2.00-----1.00--------------------------------------------------------------1.00--------------------
....................................................................................TGCCTCTGCTCTCCTCCTGACGCT..................................................................2414.0072.002.00--1.00------------------------------------------------------------1.00---------------------------------------------
........................................................................................TCTGCTCTCCTCCTGACGCC..................................................................2013.003.00----------1.00---1.001.00----------------------------------------------------------------------------------------------
....................................................................................TGCCTCTGCTCTCCTCCTCG......................................................................203.000.003.00-------------------------------------------------------------------------------------------------------------
.......................................................................................CTCTGCTCTCCTCCTGACG....................................................................1913.003.00-------------------------------------2.00----------1.00-------------------------------------------------------------
....................................................................................TGCCTCTGCTCTCCTCCTGACGTA..................................................................2413.00139.00----------------------------------------------------------------1.00---------1.00--1.00--------------------------------
........................................................................................................CGCCCCTCCTCCTCACCTAGT.................................................213.000.00------------------3.00-------------------------------------------------------------------------------------------
........................................................................................TCTGCTCTCCTCCTGACGCCCCT...............................................................2313.003.00--------------------3.00-----------------------------------------------------------------------------------------
........................................................................................TCTGCTCTCCTCCTGACGCCTTTT..............................................................2413.003.002.00----------------1.00--------------------------------------------------------------------------------------------
.......................ACTGAACTGGAGCAGCAGCGACT................................................................................................................................2313.003.00-----2.00---------------------------------------1.00----------------------------------------------------------------
........................................................................................TCTGCTCTCCTCCTGACGA...................................................................1912.009.00---------------------------------------2.00----------------------------------------------------------------------
..................................................GTGGGTGACAGGGTGGGGCAGGCGTAGACCTTCCTGCCTCTGCTCTCCTCCTGACGT...................................................................5712.001.00------------------------------------2.00-------------------------------------------------------------------------
....................................................................................TGCCTCTGCTCTCCTCCTGAGT....................................................................2212.0012.002.00-------------------------------------------------------------------------------------------------------------
..............................................................................CCTTCCTGCCTCTGCGAT..............................................................................182.000.00------------------------------------------------------------------------------------1.00-----------------------1.00-
..................................................GTGGGTGACAGGGTGGGGCAGGCGTTA.................................................................................................2712.001.00--------------------------------------------------------2.00-----------------------------------------------------
..................................................GTGGGTGACAGGGTGGGGCAGG......................................................................................................2212.002.00---------------------------2.00----------------------------------------------------------------------------------
........................................................................................................CGCCCCTCCTCCTCACCTAGA.................................................212.000.00-------------------------------------1.00-------------------------------------------1.00----------------------------
....................................................................................TGCCTCTGCTCTCCTCCTGACGCA..................................................................2412.0072.001.00------1.00------------------------------------------------------------------------------------------------------
....................................................................................TGCCTCTGCTCTCCTCCTGAAA....................................................................2212.0012.00----1.00--------------1.00------------------------------------------------------------------------------------------
.......................................................................................CTCTGCTCTCCTCCTGACGCC..................................................................2112.002.001.00-----------------------------------------1.00-------------------------------------------------------------------
..........................GAACTGGAGCAGCAGCGACT................................................................................................................................2012.002.00-----------------2.00--------------------------------------------------------------------------------------------
....................................................................................TGCCTCTGCTCTCCTCCTGACGCAT.................................................................2512.0072.00--------------1.00--------------1.00--------------------------------------------------------------------------------
.....................CTACTGAACTGGAGCAGCAGCGACTG...............................................................................................................................2612.002.00--------------------------------------------2.00-----------------------------------------------------------------
....................................................................................TGCCTCTGCTCTCCTCCTG.......................................................................1921.501.50---1.00------------0.50---------------------------------------------------------------------------------------------
.....................................................................................................................................CACAGCCAGGACCTGGACAGCGCTCTTC.............2811.001.00----------------------------1.00---------------------------------------------------------------------------------
.......................................................TGACAGGGTGGGGCAGGCGGAGA................................................................................................231.000.00----------------------------------------------1.00---------------------------------------------------------------
.......................ACTGAACTGGAGCAGCAGCGAC.................................................................................................................................2211.001.00-----1.00--------------------------------------------------------------------------------------------------------
.....................................................................................GCCTCTGCTCTCCTCCTGACGCT..................................................................231.000.00-----------------------------------------------------------------------------------------------1.00--------------
...............................................................................................................................ACAGAACACAGCCAGGACC............................1911.001.00------------------------------------------------------1.00-------------------------------------------------------
..................................................GTGGGTGACAGGGTGGGGCAGGA.....................................................................................................2311.002.00--------------------------------------------------------------------------------------------1.00-----------------
....................................................................................TGCCTCTGCTCTCCTCCTGACGTAT.................................................................2511.00139.001.00-------------------------------------------------------------------------------------------------------------
.................AGGTCTACTGAACTGGAGCAGCAGCGACTGAGG............................................................................................................................3311.001.00-----------------------------------------------1.00--------------------------------------------------------------
........................................................................................TCTGCTCTCCTCCTGACGCCAATA..............................................................2411.003.001.00-------------------------------------------------------------------------------------------------------------
..........................................................CAGGGTGGGGCAGGCAATT.................................................................................................191.000.00-------------------------------------------------------------------1.00------------------------------------------
.......................................................................................CTCTGCTCTCCTCCTGACGT...................................................................2011.003.00------1.00-------------------------------------------------------------------------------------------------------
........................................................................................TCTGCTCTCCTCCTGACGAA..................................................................2011.009.00-----------------------------------------------------------------------------------------------------1.00--------
.................................AGCAGCAGCGACTGAGCG...........................................................................................................................181.000.00------------------------------------------------------------------------------1.00-------------------------------
..................................................GTGGGTGACAGGGTGGGGCA........................................................................................................2011.001.00---1.00----------------------------------------------------------------------------------------------------------
...................................................................................CTGCCTCTGCTCTCCTCCTGCG.....................................................................221.000.00------------------------1.00-------------------------------------------------------------------------------------
........................................................................................TCTGCTCTCCTCCTGACGCCT.................................................................2111.003.00-1.00------------------------------------------------------------------------------------------------------------
.................................AGCAGCAGCGACTGAGGGAC.........................................................................................................................201.000.00------------------------------------------------------------------------1.00-------------------------------------
............TGGACAGGTCTACTGAACT...............................................................................................................................................1911.001.00-------------------1.00------------------------------------------------------------------------------------------
....................................................................................TGCCTCTGCTCTCCTCCTGT......................................................................2021.001.501.00-------------------------------------------------------------------------------------------------------------
........................CTGAACTGGAGCAGCAGCGACTGAGG............................................................................................................................2611.001.00--------------------------------------------1.00-----------------------------------------------------------------
......................TACTGAACTGGAGCAGCAGCGACTAA..............................................................................................................................261.000.00---------------------------------------------------------1.00----------------------------------------------------
......................................................GTGACAGGGTGGGGCAGGCGTAGA................................................................................................2411.001.00--------------------------1.00-----------------------------------------------------------------------------------
..........................GAACTGGAGCAGCAGAAG..................................................................................................................................181.000.00-1.00------------------------------------------------------------------------------------------------------------
....................................................................................TGCCTCTGCTCTCCTCCTGCG.....................................................................2121.001.501.00-------------------------------------------------------------------------------------------------------------
..........................................................................................TGCTCTCCTCCTGACGCCCCTCA.............................................................231.000.001.00-------------------------------------------------------------------------------------------------------------
...........................................................AGGGTGGGGCAGGCG....................................................................................................1521.001.00--------------------------------------------------------------------------------------------------------1.00-----
..................................................GTGGGTGACAGGGTGGGGCAGGCGT...................................................................................................2511.001.00---------------------------------------------------1.00----------------------------------------------------------
....................................................GGGTGACAGGGTGGGGCAGG......................................................................................................2011.001.00----------------------------------------------------------1.00---------------------------------------------------
....................................................................................TGCCTCTGCTCTCCTCCTGACGTT..................................................................2411.00139.00-------------------------------------------------------------------------1.00------------------------------------
........................................................................................TCTGCTCTCCTCCTGACGCCCTT...............................................................231.000.00------------------------------------------------1.00-------------------------------------------------------------
....................................................................................TGCCTCTGCTCTCCTCCTGACGCTA.................................................................2511.0072.00-1.00------------------------------------------------------------------------------------------------------------
......................TACTGAACTGGAGCAGCAGCGACTGA..............................................................................................................................2611.001.00-------------------------------------------------------------------------------------------------1.00------------
...............................................................................................TCCTCCTGACGCCCCTCCTCCTCACCTAGT.................................................301.000.00-----------------------------------------------------------------------------------1.00--------------------------
......................TACTGAACTGGAGCAGCAGCGACTG...............................................................................................................................2511.001.00-----------------------------------------------1.00--------------------------------------------------------------
....................................................................................TGCCTCTGCTCTCCTCCTGATT....................................................................2211.0012.001.00-------------------------------------------------------------------------------------------------------------
..................................................GTGGGTGACAGGGTGGGGCAGGCGTAGACCTTCCTGCCTCTGCTCTCCTCCTGACG....................................................................5611.001.00------------------------------------1.00-------------------------------------------------------------------------
....................................................................................TGCCTCTGCTCTCCTCCTGACGCAG.................................................................2511.0072.00---------------------------------------------1.00----------------------------------------------------------------
...............................................................................................................................ACAGAACACAGCCAGGACCTGGAC.......................2411.001.00-------------------------------------------1.00------------------------------------------------------------------
......................TACTGAACTGGAGCAGCAGCGACTGAGG............................................................................................................................2811.001.00-------------------------------------------------------------------------------1.00------------------------------
....GCAGCTGATGGACAGGTCTACTGA..................................................................................................................................................2411.001.00----------------------------------------1.00---------------------------------------------------------------------
..........................................................................TAGACCTTCCTGCCTCTGCTCTC.............................................................................2311.001.00-1.00------------------------------------------------------------------------------------------------------------
.......................................................TGACAGGGTGGGGCAGGCGTAG.................................................................................................2211.001.00------------------------1.00-------------------------------------------------------------------------------------
..........................................................................................TGCTCTCCTCCTGACGCCCCTCAT............................................................241.000.001.00-------------------------------------------------------------------------------------------------------------
....................................................................................TGCCTCTGCTCTCCTCCTCCGC....................................................................221.000.00----------1.00---------------------------------------------------------------------------------------------------
........................................................................................TCTGCTCTCCTCCTGACGCCTT................................................................2211.003.001.00-------------------------------------------------------------------------------------------------------------
....................TCTACTGAACTGGAGCAGCA......................................................................................................................................2011.001.00-------------------------------------------1.00------------------------------------------------------------------
..................................................GTGGGTGACAGGGTGGGG..........................................................................................................1811.001.00------------------------------------------------------------------------------------------1.00-------------------
............................ACTGGAGCAGCAGCGAC.................................................................................................................................1711.001.00-----1.00--------------------------------------------------------------------------------------------------------
......................TACTGAACTGGAGCAGCAGCGACTGAGGGACAC.......................................................................................................................331.000.00--------------------------------------------------------------------------------------------------1.00-----------
..................................................GTGGGTGACAGGGTGGGGCAGGCGTC..................................................................................................2611.001.00---------------------------------------------------------1.00----------------------------------------------------
............................................................................................................................GACACAGAACACAGCCAGGACCTGGACAGCGC..................3211.001.00----------------------------------------1.00---------------------------------------------------------------------
........................CTGAACTGGAGCAGCAGCGACTGAGGG...........................................................................................................................2711.001.00----------------------------1.00---------------------------------------------------------------------------------
........................................................................................TCTGCTCTCCTCCTGACGCTCTT...............................................................2311.004.001.00-------------------------------------------------------------------------------------------------------------
.........................................................................................................................................GCCAGGACCTGGACAGC....................1721.001.00----------------------------------------------------------------------------------------1.00---------------------
..................................................GTGGGTGACAGGGTGGGGCAGGCGTAGACCTTCCTGCCTCTGCTCTCCTCCTGACGCCCCTCCTCCT.........................................................6711.001.00------------------------------------1.00-------------------------------------------------------------------------
....................................................................................TGCCTCTGCTCTCCTCCTTAAA....................................................................221.000.00---------------1.00----------------------------------------------------------------------------------------------
.......................................................................................CTCTGCTCTCCTCCTGACGC...................................................................2011.001.00-1.00------------------------------------------------------------------------------------------------------------
.....................................................................................GCCTCTGCTCTCCTCCTGACG....................................................................2111.001.00--------1.00-----------------------------------------------------------------------------------------------------
......................................................GTGACAGGGTGGGGCAGGCGT...................................................................................................2111.001.001.00-------------------------------------------------------------------------------------------------------------
.........................TGAACTGGAGCAGCAGCGACTGAGGGA..........................................................................................................................271.000.00-----------------------------------------------1.00--------------------------------------------------------------
..............................................................................................................................CACAGAACACAGCCAGGACCTGGACAG.....................2711.001.00----------------------------1.00---------------------------------------------------------------------------------
................................................................................TTCCTGCCTCTGCTCTCCTCCTGAC.....................................................................2511.001.00--------1.00-----------------------------------------------------------------------------------------------------
.....................................................GGTGACAGGGTGGGGCAGGCGTAGA................................................................................................2511.001.00--------------------------1.00-----------------------------------------------------------------------------------
.......................ACTGAACTGGAGCAGCAGCGACTGAGG............................................................................................................................2711.001.00------------------------------1.00-------------------------------------------------------------------------------
.......................ACTGAACTGGAGCAGCAGC....................................................................................................................................1911.001.00------------------------------------------------------1.00-------------------------------------------------------
....................................................................................TGCCTCTGCTCTCCTCCTCCG.....................................................................211.000.001.00-------------------------------------------------------------------------------------------------------------
....................................................................................TGCCTCTGCTCTCCTCCTGACGGT..................................................................2411.00139.001.00-------------------------------------------------------------------------------------------------------------
...............................................................TGGGGCAGGCGTAGAATTG............................................................................................191.000.00---------------------------------------------------------------------1.00----------------------------------------
..................................................GTGGGTGACAGGGTGGGGCAGGCGTA..................................................................................................2611.001.00----------------------------------------1.00---------------------------------------------------------------------
...................................................................................CTGCCTCTGCTCTCCTCCTGACGT...................................................................241.000.00--------------1.00-----------------------------------------------------------------------------------------------
.......................................................................GCGTAGACCTTCCTGCCTCT...................................................................................2011.001.00------1.00-------------------------------------------------------------------------------------------------------
..........................................................................................TGCTCTCCTCCTGACGCCCCTTT.............................................................231.000.00--------------------------------------------------------------------------------1.00-----------------------------
..................................................................................................................................GAACACAGCCAGGACCTGGACAGCG...................2511.001.00-----------------------1.00--------------------------------------------------------------------------------------
............TGGACAGGTCTACTGAACTGGAGCAG........................................................................................................................................2611.001.00---------------------------------------------------1.00----------------------------------------------------------
...........................................................AGGGTGGGGCAGGCGTAGA................................................................................................1911.001.00----------------1.00---------------------------------------------------------------------------------------------
..........................................................................................TGCTCTCCTCCTGACGCCCCTCC.............................................................2311.001.00----------------------------1.00---------------------------------------------------------------------------------
....................................................................................TGCCTCTGCTCTCCTCCTGCGC....................................................................2221.001.501.00-------------------------------------------------------------------------------------------------------------
...................GTCTACTGAACTGGAGCAGCAGCGACT................................................................................................................................2711.001.00---------------------------------------------------1.00----------------------------------------------------------
...............................................................TGGGGCAGGCGTAGAA...............................................................................................161.000.00-----------------------------------------------------1.00--------------------------------------------------------
........................................................................................TCTGCTCTCCTCCTGACGCA..................................................................2011.004.00----------------------------------------------------------------------------------1.00---------------------------
...........................................................................................................................GGACACAGAACACAGCCAGGACCTGGA........................2711.001.00------------------------------------------------------------------------------------------------1.00-------------
...................................................................................CTGCCTCTGCTCTCCTCCTGT......................................................................211.000.00---------1.00----------------------------------------------------------------------------------------------------
.....................................................GGTGACAGGGTGGGGCAGGC.....................................................................................................2011.001.00--------------1.00-----------------------------------------------------------------------------------------------
.........................................................................GTAGACCTTCCTGCC......................................................................................1530.670.67------------------------0.33-------------0.33-----------------------------------------------------------------------
.......................ACTGAACTGGAGCAGC.......................................................................................................................................1620.500.50-------------------------------------------------------------------------------------------------------------0.50
....................................................................................TGCCTCTGCTCTCCTCCCG.......................................................................1970.140.140.14-------------------------------------------------------------------------------------------------------------
....................................................................................TGCCTCTGCTCTCCTCC.........................................................................1770.140.14-----------------0.14--------------------------------------------------------------------------------------------
....................................................................................TGCCTCTGCTCTCCTCCCTGT.....................................................................2170.140.140.14-------------------------------------------------------------------------------------------------------------
....................................................................................TGCCTCTGCTCTCCTCCCGAC.....................................................................2170.140.14--------------------------------------------------------------------0.14-----------------------------------------

Antisense strand
AGAAGCAGCTGATGGACAGGTCTACTGAACTGGAGCAGCAGCGACTGAGGGTGGGTGACAGGGTGGGGCAGGCGTAGACCTTCCTGCCTCTGCTCTCCTCCTGACGCCCCTCCTCCTCACCTAGGACACAGAACACAGCCAGGACCTGGACAGCGCTCTTCTGCGCCTAGAGGA
....................................................(((((.(((((.((((((((.((((......)))).))))).))).))))).))))).................................................................
..................................................51.........................................................110..............................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR206940(GSM723281)
other. (brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesWT4()
Testes Data. (testes)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR206939(GSM723280)
other. (brain)		SRR060845(GSM561991)
total RNA. (brain)		SRR206941(GSM723282)
other. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR023847(GSM307156)
mESv6.5smallrna_rep1. (cell line)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesWT3()
Testes Data. (testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR206942(GSM723283)
other. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR042453(GSM539845)
mouse marginal zone B cells (spleen) [09-002]. (b cell)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR525240(SRA056111/SRX170316)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		GSM361399(GSM361399)
CGNP_P6_p53--_Ink4c--_rep2. (brain)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR525241(SRA056111/SRX170317)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR553586(SRX182792)
source: Testis. (testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		mjTestesWT2()
Testes Data. (testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR037906(GSM510442)
brain_rep3. (brain)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		GSM361394(GSM361394)
CGNP_P6_wt_rep1. (brain)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
......................................................................................CCTCTGCTCTCCTCCTTTT..................................................................... 191.000.00-------------------------------------------------------------------1.00------------------------------------------
..............................................................................................................TCCTCCTCACCTAGGACACAGA.......................................... 2211.001.00------------------------------1.00-------------------------------------------------------------------------------
................................................................................TTCCTGCCTCTGCTCCTGA........................................................................... 191.000.00-----------------------------------------------------------------------------------------------------------1.00--
.....................................................................................................................................................ACAGCGCTCTTCTGCGTCTT..... 201.000.00-----------------------------------------------------1.00--------------------------------------------------------
.......................................................................................CTCTGCTCTCCTCCTTTCA.................................................................... 191.000.00---------------------------------------------------------------------------1.00----------------------------------
......................................................................................................................................................CAGCGCTCTTCTGCG......... 1520.500.50-----------------------------------------------------0.50--------------------------------------------------------