ID: uc008vjf.34
GENE: Hspg2(35)
chr4:137124711-137125225+


(2)
AGO1.ip 		(3)
AGO2.ip 		(2)
AGO3.ip 		(2)
B-CELL 		(12)
BRAIN 		(4)
CELL-LINE 		(1)
DCR.mut 		(1)
DGCR8.mut 		(10)
EMBRYO 		(11)
ESC 		(4)
FIBROBLAST 		(1)
HEART 		(1)
KIDNEY 		(3)
LIVER 		(1)
LYMPH 		(13)
OTHER 		(5)
OTHER.mut 		(1)
OVARY 		(4)
PIWI.ip 		(3)
PIWI.mut 		(7)
SKIN 		(1)
SPLEEN 		(21)
TESTES 		(1)
THYMUS 		(2)
UTERUS

Sense strand
TCAGAAGATCCCATCAATGACGGCGAGTGGCATCGGATAACAGCGCTGCGGTAAGGAGTCCAGCCAAGCGCTAGGGGGAGGGACCAGAGTTGGGCATAGGATCCAGGAGCACATACCTCCCCACCCCAGGCTTGGGGCAAGCTCTGAGATCTGAGGGGCAGAATAAGTAACTGATATGGAAAGACTCCTTACTGGCAAGCAGCGCTCCTCCAGTATCAAGGTGGTGGTGCACACTTGTGATCCCAGCACTTGGGAGGTGGAGGCAAGAAGATTCTGAGTTCGAACCCAGCCTGGGTTTCTTAAAGAGGGGAGAGCTGAGGACAGGCCTCAGAAGGTGGCTGTGTGTGGCCAGTAGGAAAGCAGAGAACTGAGAGCAAACACGGGCCAGATGTGCCTATTGGGAGTGTCAATGACAGGGGAGGATGGGGATTCAGGGCAAAGGACCTGACCCTGTCACACCTGCAGAGAGGGCCAGAGAGGCTCCATCCAAGTAGACGGTGAGGATCTGGTCACCG
..........................................................................................................................................................................................................................................................................................................................((((((.....))))))....(((((((((...((...(((............)))...))..)))))).)))((((..((.....))..))))..((.((((....(((((((..(((((........))))))))))))...))))))...................................................
..............................................................................................................................................................................................................................................................................................................303...............................................................................................................................................................465................................................
SizePerfect hitTotal NormPerfect NormSRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		mjTestesWT1()
Testes Data. (testes)		mjLiverWT3()
Liver Data. (liver)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR037935(GSM510473)
293cand3. (cell line)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		GSM416732(GSM416732)
MEF. (cell line)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		mjTestesWT3()
Testes Data. (testes)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR037922(GSM510460)
e12p5_rep4. (embryo)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR059774(GSM562836)
MEF_control. (MEF)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR065056(SRR065056)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR073955(GSM629281)
total RNA. (blood)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		mjTestesWT2()
Testes Data. (testes)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR206941(GSM723282)
other. (brain)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR039610(GSM527274)
small RNA-Seq. (brain)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)
...................................................................................................................................................................................................................................................................................................................GGGAGAGCTGAGGACTGT..............................................................................................................................................................................................1834.000.00-17.007.004.00----1.00-------------1.00----------2.00------------------------1.00---------1.00--------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCCTGTCACACCTGCAGT.................................................21129.003.00----3.004.00-2.00-3.002.001.00--1.001.00---1.00-----2.00---1.00-------2.00------1.00-----1.00-------------------1.00-1.00-----1.00--1.00-------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGGGGAGGATGGGGATTCAGG................................................................................25122.0022.0016.00-----1.00------------1.001.00--------------------------------1.00---1.00---------------------------1.00---------
............................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGGAGGATGGGGATTCAGG................................................................................2318.008.002.00--------1.00----------------------------2.00--1.00----------1.00------1.00-----------------------------------
................................TCGGATAACAGCGCTGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1818.008.00----4.00-----------1.00-----------3.00------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGGGAGGATGGGGATTCAGG................................................................................2417.007.002.00-------------------1.00-----------1.00--------1.00---1.00-----------------------1.00-------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCCTGTCACACCTGCAGA.................................................2116.006.00-----1.00---------2.00-------1.00------------1.00-------------------------------------------------1.00--------
.....................................................................................................................................................................................................................................................................................................................................................................................GCAAACACGGGCCAGACC............................................................................................................................185.000.00--------5.00--------------------------------------------------------------------------------------
.................................CGGATAACAGCGCTGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1715.005.00----1.00------------------1.00-----1.00---------1.00-------------------------------------1.00-----------------
............................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGGAGGATGGGGATTCAG.................................................................................2214.004.00------------------1.001.00-----1.00---------1.00-----------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGGAGGATGGGGATTCAGG................................................................................2214.004.003.00----------------------------------------------------------------1.00-----------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCCTGTCACACCTGCAGAT................................................2213.006.00---------------------------3.00-------------------------------------------------------------------
....AAGATCCCATCAATGACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.003.00-----------3.00-----------------------------------------------------------------------------------
................ATGACGGCGAGTGGCATCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................193.000.003.00----------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCCTGTCACACCTGCAG..................................................2013.003.00-------1.00------2.00--------------------------------------------------------------------------------
.....................GGCGAGTGGCATCGGATAACAGCGCTGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2913.003.00------------3.00----------------------------------------------------------------------------------
...............AATGACGGCGAGTGGCATCGGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.003.00-------------2.00-----------------------------------------------1.00---------------------------------
........................................................................................................................................................................................................................................................................AAGAAGATTCTGAGTTCGAACCCAGCCTG..............................................................................................................................................................................................................................2913.003.00--------------------------3.00--------------------------------------------------------------------
...GAAGATCCCATCAATGACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003.00----------------3.00------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................ATGACAGGGGAGGATGGGGATTCAG.................................................................................2513.003.003.00----------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCCTGTCACACCTGCAGAA................................................2212.006.00-----1.00------------------------------------1.00----------------------------------------------------
...............................................................................................................................................................................................................................................................................TTCTGAGTTCGAACCTC...................................................................................................................................................................................................................................172.000.00-----------------------------------------------2.00-----------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAGGGCAAAGGACAGGG...................................................................202.000.00-------------------------------2.00---------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGGTGAGGATCTGGTC....1912.002.00-----1.00----1.00------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGACGGTGAGGATCTGG......1812.002.00-----------------1.001.00----------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................ATGACAGGGGAGGATGGGGATTCAA.................................................................................252.000.00------------------------------------------------2.00----------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGGGAGGATGGGGATTCAG.................................................................................2312.002.00---------1.00----------1.00--------------------------------------------------------------------------
.......................CGAGTGGCATCGGATAACAGCGCTGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002.00------------------------------------1.00--------------------------------------------------1.00-------
.........................................................................................................................................................................................................................................................................................................................................................................................................................ATGACAGGGGAGGATGGGGATTCAGG................................................................................2612.002.002.00----------------------------------------------------------------------------------------------
.........................................................................................................................................................AGGGGCAGAATAAGTGGG........................................................................................................................................................................................................................................................................................................................................................182.000.00----------------------1.00-------------------------------------------------------------1.00----------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACGGTGAGGATCTGG......1911.001.001.00----------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................GTGCCTATTGGGAGTGTCAATGACA....................................................................................................2511.001.00---------------------------------------1.00-------------------------------------------------------
..................................GGATAACAGCGCTGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.001.00-------1.00---------------------------------------------------------------------------------------
...........CATCAATGACGGCGAGTGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00----------------------------------------------------------------------------------------1.00------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTAGACGGTGAGGATCTGGT.....2311.001.00-----------------1.00-----------------------------------------------------------------------------
........................................................................................................................................................................................................................................................CTTGGGAGGTGGAGGCAAGAAGATTGT................................................................................................................................................................................................................................................271.000.00------------------------------------------------------1.00----------------------------------------
..................................................................................................................................................................................................................................................................................................................................................CTGTGTGTGGCCAGTAGGAAAGCAGAGAACTGA................................................................................................................................................3311.001.00-------------------------------------------------------------------------------------------1.00---
............................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGGAGGATGGGGATTCT..................................................................................211.000.00----------------------------------------------1.00------------------------------------------------
.....AGATCCCATCAATGACGGCGAGTGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001.00--------------------------------------------------------------------------------------------1.00--
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGACGGTGAGGATCTGGTCAC..2211.001.00------1.00----------------------------------------------------------------------------------------
......................................................................................................................CCCCACCCCAGGCTTGCAA..........................................................................................................................................................................................................................................................................................................................................................................................191.000.00----------------------------------------------------------------------------------1.00------------
...............................ATCGGATAACAGCGCTGCGAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................221.000.00-------1.00---------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGGAGGATGGGGATTCCGG................................................................................231.000.00---------------------1.00-------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGAGGCTCCATCCAAGT.......................2011.001.00-------1.00---------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGGGAGGATGGGGATTCA..................................................................................2211.001.00------------------------------------------1.00----------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGTAGACGGTGAG.............1611.001.00-----------------1.00-----------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGCAGAGAGGGCTGAT.......................................191.000.00----------------------1.00------------------------------------------------------------------------
..............................................................................................CATAGGATCCAGGAGTCA...................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00------------------1.00----------------------------------------------------------------------------
........................................................................................................................................................GAGGGGCAGAATAAGTAG.........................................................................................................................................................................................................................................................................................................................................................181.000.00-1.00---------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTGAGGATCTGGTCAC..1911.001.00--------------------------------------------1.00--------------------------------------------------
........................................................................................................................................................GAGGGGCAGAATAAGCGGG........................................................................................................................................................................................................................................................................................................................................................191.000.00-1.00---------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCCTGTCACACCTGCAGTT................................................2211.003.00-------------------------------------------------------------------------------1.00---------------
........................................................................................................................................................GAGGGGCAGAATAAGTGGGA.......................................................................................................................................................................................................................................................................................................................................................201.000.00--------------------------------------------------------------------------------1.00--------------
................ATGACGGCGAGTGGCATCGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00------------------------1.00----------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGTAGACGGTGAGGATCTGGTC....2511.001.00-----------------------------------------------------------------------------------1.00-----------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGACGGTGAGGATCTGGCC....221.000.00--------------------1.00--------------------------------------------------------------------------
..................GACGGCGAGTGGCATCGGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00-------------1.00---------------------------------------------------------------------------------
.......ATCCCATCAATGACGGCGAGTGGCATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001.00--------------------------------------------------------------------------1.00--------------------
.........................................................................................................................................................................................................................................................................................................................................................................AGAGAACTGAGAGCAAACACGGGCC.................................................................................................................................2511.001.00----------1.00------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGGTGAGGATCTGGTCACCG2311.001.00----------1.00------------------------------------------------------------------------------------
........................................................................AGGGGGAGGGACCAGGGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-----------1.00-----------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGGAGGATGGGGATTGAA.................................................................................221.000.00----------------------------------1.00------------------------------------------------------------
....................CGGCGAGTGGCATCGGATAACAGCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00-------------------------------------------1.00---------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGGAGGATGGGGATTCA..................................................................................2111.001.00----------------------------------------------1.00------------------------------------------------
..............CAATGACGGCGAGTGGCATCGGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00------------------------1.00----------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATCCAAGTAGACGGTGAGGATCTGT......281.000.00------------------------------------------------------------1.00----------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAGACGGTGAGGATCTGGTCAC..2511.001.00------1.00----------------------------------------------------------------------------------------
.......................CGAGTGGCATCGGATAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00---------------------------------------------------1.00-------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................GAAGGTGGCTGTGTGGAGT......................................................................................................................................................................191.000.00---1.00-------------------------------------------------------------------------------------------
..................GACGGCGAGTGGCATCGGATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00--------------------------------1.00--------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................AGGAAAGCAGAGAACTAG................................................................................................................................................181.000.00-1.00---------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCCTGTCACACCTGCAGC.................................................2111.003.00----1.00------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................TGGCCAGTAGGAAAGCAGAGA.....................................................................................................................................................2111.001.00-----------------------1.00-----------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................AACTGAGAGCAAACAATG....................................................................................................................................181.000.00---1.00-------------------------------------------------------------------------------------------
.................TGACGGCGAGTGGCATCGGATAACAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001.00--------------------------------------------------------------1.00--------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGTAGACGGTGAGGATCTGGTC....2611.001.00------1.00----------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGGAGGATGGGGATTCAGGCT..............................................................................2511.008.00---------------------------------------------------------------------------1.00-------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................AGGGGAGGATGGGGATTCAGG................................................................................2111.001.00-------------------------------------------------------------------------1.00---------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGGGAGGATGGGGATTCAGGT...............................................................................2511.007.00-----------------------------------------------------------------------------------------1.00-----
............................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGGAGGATGGGGATTCAGGAAA.............................................................................2611.008.00----------------------------------------------------------------1.00------------------------------
...................ACGGCGAGTGGCATCGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00---------------1.00-------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAGACGGTGAGGATCT........1911.001.00-------------1.00---------------------------------------------------------------------------------
.........................................................................................................................................................AGGGGCAGAATAAGTGCG........................................................................................................................................................................................................................................................................................................................................................181.000.00------------------1.00----------------------------------------------------------------------------
.........................................................................................................................................................AGGGGCAGAATAAGTGGGA.......................................................................................................................................................................................................................................................................................................................................................191.000.00-1.00---------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................GAAGGTGGCTGTGTGTAG.......................................................................................................................................................................181.000.00---1.00-------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCCTGTCACACCTGC....................................................1811.001.00---------------------1.00-------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACCTGACCCTGTGCTC.........................................................191.000.00--1.00--------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGGAGGATGGGGATTCAGAA...............................................................................2411.004.00---------------------------------------------------------------1.00-------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................GAGAACTGAGAGCAAGCT.......................................................................................................................................181.000.00-1.00---------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................AGGGGAGGATGGGGATTCAGGGCAA............................................................................2511.001.001.00----------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGTAGACGGTGAGGATCTGGTCAC..2711.001.00------1.00----------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................TGAGAGCAAACACGGCAGC................................................................................................................................191.000.00-1.00---------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTGAGGATCTGGTCA...1711.001.00-----------------------------------------------------------------------1.00-----------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTGAGGATCTGGCT....171.000.00--1.00--------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGGAGGATGGGGATTAAGG................................................................................231.000.00------------1.00----------------------------------------------------------------------------------
...GAAGATCCCATCAATGACGGCGAGTGGCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.001.00-------------------------------------------------1.00---------------------------------------------
...............................ATCGGATAACAGCGCTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-------------------------------------------------------------------1.00---------------------------
.................................................................................................................................................................................................................................................CCCAGCACTTGGGAGGTGGCGG............................................................................................................................................................................................................................................................221.000.00-------------------------------------------1.00---------------------------------------------------
.................................................................................................................................................................................................................................................................................................................AGGGGAGAGCTGAGGGTGC...............................................................................................................................................................................................191.000.00---1.00-------------------------------------------------------------------------------------------
........................................................................................................................................................GAGGGGCAGAATAAGTGCG........................................................................................................................................................................................................................................................................................................................................................191.000.00-1.00---------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGGAGGATGGGGATTCAT.................................................................................2211.001.00------------------------------------------------------------------------------------------1.00----
....................................................................................................................................TGGGGCAAGCTCTGAGATCTGAGGGGCAGAAT...............................................................................................................................................................................................................................................................................................................................................................3211.001.00--------------1.00--------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGGAGGATGGGGATTCAAA................................................................................2311.001.00----------------------------------1.00------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCTGTCACACCTGCAGT.................................................201.000.00---------------------------------------------1.00-------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGTAGACGGTGAGGATCTGG......2411.001.00--------------------------------------------------------1.00--------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGGAGGATGGGGATTCAGGT...............................................................................2411.008.00-------------------1.00---------------------------------------------------------------------------
..............................................TGCGGTAAGGAGTCCCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00-1.00---------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCTCCATCCAAGTAGAC...................2111.001.00---------------------1.00-------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGTAGACGGTGAGGATCTGGT.....2611.001.00----------------------------------------1.00------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................CAGAGAACTGAGAGCAAACACGGGCCA................................................................................................................................2711.001.00----------------------------------------1.00------------------------------------------------------
...........CATCAATGACGGCGAGTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00-----------------1.00-----------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................AGGGGAGAGCTGAGGGATC...............................................................................................................................................................................................191.000.00---1.00-------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGATTCAGGGCAAAGGAC.......................................................................2111.001.00------1.00----------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCAAAGGACCTGAC..................................................................1620.500.50---------------------------------------------------------------------------------------------0.50-
.........................................................................................................................................................................................................................................................................................................................................................................................................................ATGACAGGGGAGGATGGG........................................................................................1830.330.33----------------------------------------------------------------------------------------------0.33
...................................................................................................................CCTCCCCACCCCAGGCTTG.............................................................................................................................................................................................................................................................................................................................................................................................1930.330.33------------0.33----------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGGCCAGAGAGGCT.................................1750.200.20---------------------0.20-------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................CTGAGTTCGAACCCAGCC................................................................................................................................................................................................................................1870.140.14-----------------------------0.14-----------------------------------------------------------------

Antisense strand
TCAGAAGATCCCATCAATGACGGCGAGTGGCATCGGATAACAGCGCTGCGGTAAGGAGTCCAGCCAAGCGCTAGGGGGAGGGACCAGAGTTGGGCATAGGATCCAGGAGCACATACCTCCCCACCCCAGGCTTGGGGCAAGCTCTGAGATCTGAGGGGCAGAATAAGTAACTGATATGGAAAGACTCCTTACTGGCAAGCAGCGCTCCTCCAGTATCAAGGTGGTGGTGCACACTTGTGATCCCAGCACTTGGGAGGTGGAGGCAAGAAGATTCTGAGTTCGAACCCAGCCTGGGTTTCTTAAAGAGGGGAGAGCTGAGGACAGGCCTCAGAAGGTGGCTGTGTGTGGCCAGTAGGAAAGCAGAGAACTGAGAGCAAACACGGGCCAGATGTGCCTATTGGGAGTGTCAATGACAGGGGAGGATGGGGATTCAGGGCAAAGGACCTGACCCTGTCACACCTGCAGAGAGGGCCAGAGAGGCTCCATCCAAGTAGACGGTGAGGATCTGGTCACCG
..........................................................................................................................................................................................................................................................................................................................((((((.....))))))....(((((((((...((...(((............)))...))..)))))).)))((((..((.....))..))))..((.((((....(((((((..(((((........))))))))))))...))))))...................................................
..............................................................................................................................................................................................................................................................................................................303...............................................................................................................................................................465................................................
SizePerfect hitTotal NormPerfect NormSRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		mjTestesWT1()
Testes Data. (testes)		mjLiverWT3()
Liver Data. (liver)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR037935(GSM510473)
293cand3. (cell line)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		GSM416732(GSM416732)
MEF. (cell line)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		mjTestesWT3()
Testes Data. (testes)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR037922(GSM510460)
e12p5_rep4. (embryo)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR059774(GSM562836)
MEF_control. (MEF)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR065056(SRR065056)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR073955(GSM629281)
total RNA. (blood)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		mjTestesWT2()
Testes Data. (testes)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR206941(GSM723282)
other. (brain)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR039610(GSM527274)
small RNA-Seq. (brain)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)
............................................................................................................................................................................................................CTCCTCCAGTATCAAGAAAT................................................................................................................................................................................................................................................................................................... 201.000.00------------------------------1.00----------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................GCCTCAGAAGGTGGCTACG............................................................................................................................................................................ 191.000.00--1.00--------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................GAGGTGGAGGCAAGAAGATTCTGAGTT........................................................................................................................................................................................................................................... 2711.001.00-------------------------------------------------------1.00---------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCAGAGAGGCTCCATC............................ 1911.001.00---1.00-------------------------------------------------------------------------------------------
............................................................................................................................................................................................................CTCCTCCAGTATCAAGAACT................................................................................................................................................................................................................................................................................................... 201.000.00------------------------------1.00----------------------------------------------------------------
......................................................................................................................................................................................................GCAGCGCTCCTCCAGGAA........................................................................................................................................................................................................................................................................................................... 181.000.00------------------------1.00----------------------------------------------------------------------
......................................................................................................................................GGGCAAGCTCTGAGATCTGAGGGGCAGA................................................................................................................................................................................................................................................................................................................................................................. 2811.001.00------------------------------------------------------------------1.00----------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAGGATGGGGATCCCA................................................................................. 191.000.00-----------------------------------1.00-----------------------------------------------------------
.........................................................................................................................................................................................................GCGCTCCTCCAGTATCCA........................................................................................................................................................................................................................................................................................................ 181.000.00----------------------------------------------------------------------------1.00------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCATCCAAGTAGAC................... 1630.330.33-------------------------------------------------0.33---------------------------------------------