ID: uc008sii.18
GENE: Nol6(7)
chr4:41068111-41068293-


(6)
AGO2.ip 		(4)
B-CELL 		(14)
BRAIN 		(3)
CELL-LINE 		(2)
DCR.mut 		(1)
DGCR8.mut 		(7)
EMBRYO 		(9)
ESC 		(1)
FIBROBLAST 		(1)
KIDNEY 		(1)
LIVER 		(2)
LYMPH 		(2)
OTHER 		(1)
OTHER.ip 		(3)
OTHER.mut 		(2)
PIWI.ip 		(3)
PIWI.mut 		(7)
SPLEEN 		(21)
TESTES

Sense strand
ATGGCGTGGCACTTCTGAAGGTTTGGCTGAGGCAGCGGGAACTGGACAAGGTGAGTTGTGGGTGGCCTGGTTTCCTCGCCTCTTTGTGGGAAGGGTTGCTCCTGAGCTCAGTCCAGTCATGCTTCTCTTTCAGGGCCTGGGTGGATTTAACGGATTCATCATCTCCATGCTGGTTGCCTTCCT
...................................................((((((..(((..((((...((((.(((......)))))))))))..)))...)))))).........................................................................
..................................................51...............................................................116.................................................................
SizePerfect hitTotal NormPerfect NormSRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR073954(GSM629280)
total RNA. (blood)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		mjTestesWT3()
Testes Data. (testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		mjTestesWT2()
Testes Data. (testes)		SRR059771(GSM562833)
CD4_control. (spleen)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR037903(GSM510439)
testes_rep4. (testes)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
.........................................................................................GAAGGGTTGCTCCTGAGCTCAGT.......................................................................23118.0018.00-----2.001.00-1.00--1.00-1.00-2.00----1.00---2.00---1.00-----1.00----1.00---1.00-1.00----------------1.00----1.00----
.........................................................................................GAAGGGTTGCTCCTGAGCTCA.........................................................................2116.006.00--------------3.00-2.00------------------------1.00------------------------------
..................................................GTGAGTTGTGGGTGGCCTGGTTTC.............................................................................................................2415.005.00----1.00-----------------------1.00--1.00------------------1.00----------1.00----------
.................................AGCGGGAACTGGACAAG.....................................................................................................................................1715.005.00---------3.00---2.00----------------------------------------------------------
..................................................GTGAGTTGTGGGTGGCCTGGTTTCC............................................................................................................2514.004.00------------1.00---------------------------1.00-----1.00--------1.00----------------
.........................................................................................GAAGGGTTGCTCCTGAGCTCAGTCT.....................................................................253.000.00------1.00--------------------------------------------1.00------1.00-------------
.........................................................................................GAAGGGTTGCTCCTGAGCTCAGTCC.....................................................................2513.003.00----------2.00---------------------------1.00---------------------------------
................................................................GCCTGGTTTCCTCGCCTCTTTGTGGGA............................................................................................2713.003.00-3.00----------------------------------------------------------------------
......................TTGGCTGAGGCAGCGGGAACAA...........................................................................................................................................223.000.003.00-----------------------------------------------------------------------
................................CAGCGGGAACTGGACAAG.....................................................................................................................................1813.003.00------------------1.00----------1.00--------------1.00---------------------------
.......................TGGCTGAGGCAGCGGGAACTG...........................................................................................................................................2113.003.00-3.00----------------------------------------------------------------------
.......................TGGCTGAGGCAGCGGGAAC.............................................................................................................................................1912.002.00----------1.001.00------------------------------------------------------------
..................................................GTGAGTTGTGGGTGGCCTGGTTT..............................................................................................................2312.002.00----1.00----------------------------1.00--------------------------------------
....................GTTTGGCTGAGGCAGCGGGAACTGGA.........................................................................................................................................2612.002.00--2.00---------------------------------------------------------------------
...............................................................................................................TCCAGTCATGCTTCTCTTTCAG..................................................2212.002.00---------------------2.00--------------------------------------------------
................GAAGGTTTGGCTGAGGCAGCGGGAACT............................................................................................................................................2712.002.002.00-----------------------------------------------------------------------
..................AGGTTTGGCTGAGGCAGCGGGAAC.............................................................................................................................................2412.002.00---2.00--------------------------------------------------------------------
......................TTGGCTGAGGCAGCGGGAACTT...........................................................................................................................................222.000.002.00-----------------------------------------------------------------------
........GCACTTCTGAAGGTTTGGCTGAGGCAGCGGGA...............................................................................................................................................3212.002.00-----------------2.00------------------------------------------------------
.......GGCACTTCTGAAGGTTTGGCTGAGGCAGCGGGA...............................................................................................................................................3312.002.00----------------------2.00-------------------------------------------------
.....................................................................................................................................................ACGGATTCATCATCTCCATGCTGG..........2412.002.00-----2.00------------------------------------------------------------------
............................................................................................................CAGTCCAGTCATGCTTCTCTTTCAG..................................................2512.002.00-----------------------------------------------1.001.00-----------------------
....................................................................................................................................GGGCCTGGGTGGATTTAAC................................1911.001.00---------------------------------------------------------------------1.00--
....................GTTTGGCTGAGGCAGCGGGAACTGGAC........................................................................................................................................2711.001.00---------------------------------------------------------------1.00--------
...............TGAAGGTTTGGCTGAGGCAGCGGG................................................................................................................................................2411.001.00---1.00--------------------------------------------------------------------
...............TGAAGGTTTGGCTGAGGCAGCGGGA...............................................................................................................................................2511.001.00--1.00---------------------------------------------------------------------
..................................................GTGAGTTGTGGGTGGCCTGGTAA..............................................................................................................231.000.00------------------------------1.00-----------------------------------------
..................................................GTGAGTTGTGGGTGGCCTGGTTAG.............................................................................................................241.000.00--------------------------------1.00---------------------------------------
..................................GCGGGAACTGGACAAGG....................................................................................................................................1711.001.00------------------------------------------------------1.00-----------------
..................................................GTGAGTTGTGGGTGGCCTGGTTTCCAAAA........................................................................................................2911.004.00------1.00-----------------------------------------------------------------
..................................................GTGAGTTGTGGGTGGCCTGGTTTCACA..........................................................................................................2711.005.00------1.00-----------------------------------------------------------------
....................................................................................................................................................AACGGATTCATCATCTCCATGCTGGTTGCC.....3011.001.00-------------------------------------1.00----------------------------------
................GAAGGTTTGGCTGAGGCAGCGGGAATT............................................................................................................................................2711.001.001.00-----------------------------------------------------------------------
..................................................GTGAGTTGTGGGTGGCCTGGTTTTAT...........................................................................................................2611.002.00----1.00-------------------------------------------------------------------
.............TCTGAAGGTTTGGCTGAGGCAGCGGGTT..............................................................................................................................................281.000.00-------------------1.00----------------------------------------------------
................GAAGGTTTGGCTGAGGCAGCGGGAACTG...........................................................................................................................................2811.001.00--------1.00---------------------------------------------------------------
............TTCTGAAGGTTTGGCTGAGGCAGCGG.................................................................................................................................................2611.001.00--------1.00---------------------------------------------------------------
...............TGAAGGTTTGGCTGAGGCA.....................................................................................................................................................1911.001.00--------------------1.00---------------------------------------------------
.........................................................................................GAAGGGTTGCTCCTGAGCTCCGT.......................................................................231.000.00---------------1.00--------------------------------------------------------
...............TGAAGGTTTGGCTGAGGCAGCGGGAA..............................................................................................................................................2611.001.00---1.00--------------------------------------------------------------------
................GAAGGTTTGGCTGAGGCAGCGGG................................................................................................................................................2311.001.00------------1.00-----------------------------------------------------------
............TTCTGAAGGTTTGGCTGAGGCAGCG..................................................................................................................................................2511.001.00--1.00---------------------------------------------------------------------
............TTCTGAAGGTTTGGCTGA.........................................................................................................................................................1811.001.00-------------------------------------------------1.00----------------------
.......................TGGCTGAGGCAGCGGGAACTGGACAAG.....................................................................................................................................2711.001.00-------------------------1.00----------------------------------------------
...........CTTCTGAAGGTTTGGCTGAGGCAGCGG.................................................................................................................................................2711.001.00--1.00---------------------------------------------------------------------
...............TGAAGGTTTGGCTGAGGCAGCGGGACATC...........................................................................................................................................2911.001.00---1.00--------------------------------------------------------------------
..................................................GTGAGTTGTGGGTGGCCTGGTTA..............................................................................................................231.000.00----1.00-------------------------------------------------------------------
.........................................................................................GAAGGGTTGCTCCTGAGCTCTGT.......................................................................231.000.00------------1.00-----------------------------------------------------------
..................................................GTGAGTTGTGGGTGGCCT...................................................................................................................1821.001.00-----------------------------0.50----------------------------------------0.50-
..................................GCGGGAACTGGACAAGGGCCT................................................................................................................................2111.001.00------------------------------------1.00-----------------------------------
.............TCTGAAGGTTTGGCTGAGGCAGCGG.................................................................................................................................................2511.001.00--------------------------------------------------------1.00---------------
.......................................................................................................................................................GGATTCATCATCTCCAT...............1711.001.00-----------1.00------------------------------------------------------------
..............CTGAAGGTTTGGCTGAGGC......................................................................................................................................................1911.001.00-------------------------1.00----------------------------------------------
................................................................................................................................TTCAGGGCCTGGGTGGGAGA...................................201.000.00------------------------------------------------------------1.00-----------
................................................................................................................CCAGTCATGCTTCTCTTTCAG..................................................2111.001.00-----------------------------------------------------1.00------------------
................GAAGGTTTGGCTGAGGCAGCGGGAA..............................................................................................................................................2511.001.00------------------1.00-----------------------------------------------------
..................................................GTGAGTTGTGGGTGGCCTGGTTTTT............................................................................................................2511.002.00-------------------1.00----------------------------------------------------
..................................................GTGAGTTGTGGGTGGCCTC..................................................................................................................1920.501.00-----------------------------------------------------------------------0.50
....................................................................................................................................GGGCCTGGGTGGATT....................................1550.200.20--------0.20---------------------------------------------------------------
...................................................................................................................................................TAACGGATTCATC.......................1350.200.20-------0.20----------------------------------------------------------------

Antisense strand
ATGGCGTGGCACTTCTGAAGGTTTGGCTGAGGCAGCGGGAACTGGACAAGGTGAGTTGTGGGTGGCCTGGTTTCCTCGCCTCTTTGTGGGAAGGGTTGCTCCTGAGCTCAGTCCAGTCATGCTTCTCTTTCAGGGCCTGGGTGGATTTAACGGATTCATCATCTCCATGCTGGTTGCCTTCCT
...................................................((((((..(((..((((...((((.(((......)))))))))))..)))...)))))).........................................................................
..................................................51...............................................................116.................................................................
SizePerfect hitTotal NormPerfect NormSRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR073954(GSM629280)
total RNA. (blood)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		mjTestesWT3()
Testes Data. (testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		mjTestesWT2()
Testes Data. (testes)		SRR059771(GSM562833)
CD4_control. (spleen)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR037903(GSM510439)
testes_rep4. (testes)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
......................................................................................................................................................................ATGCTGGTTGCCTTCCGCA 198.000.00-------2.00---------------1.00--1.001.00------------------------1.00------------1.00--1.00---
......................................................................................................................................................................ATGCTGGTTGCCTTCCG 172.000.00-------1.00----------------------------------------------------------1.00-----
....................................................................................................................................GGGCCTGGGTGGATTACCA................................ 1951.000.00-----------------------1.00------------------------------------------------
......................................................................................................................................................................ATGCTGGTTGCCTTCCGCC 191.000.00------------------------------------------1.00-----------------------------
.........................................................GTGGGTGGCCTGGTTGTT............................................................................................................ 181.000.00-----------------------------------------------------------1.00------------
......................................................................................................................................................................ATGCTGGTTGCCTTCCGC 181.000.00--------------------------1.00---------------------------------------------
..............................................................................................................GTCCAGTCATGCTTCTCTTTCA................................................... 2211.001.00-----------------------------------1.00------------------------------------
....................................................................................................................................................................CCATGCTGGTTGCCTGAAC 191.000.00---------------------------------------------------------1.00--------------
......................................................................................................................................................................ATGCTGGTTGCCTTCCGAA 191.000.00---------------------------1.00--------------------------------------------
.........................................................................................................GCTCAGTCCAGTCATA.............................................................. 161.000.00----------------------------------------------------------------1.00-------