ID: uc008pvo.1
GENE: Robld3(1)
chr3:88354658-88354907-


(1)
AGO.mut 		(4)
AGO2.ip 		(7)
B-CELL 		(10)
BRAIN 		(7)
EMBRYO 		(2)
ESC 		(1)
KIDNEY 		(2)
LIVER 		(1)
LUNG 		(3)
LYMPH 		(10)
OTHER 		(4)
OTHER.mut 		(2)
PIWI.ip 		(1)
PIWI.mut 		(1)
SKIN 		(5)
SPLEEN 		(1)
TDRD1.ip 		(12)
TESTES 		(1)
TOTAL-RNA 		(1)
UTERUS

Sense strand
CTTGGTTAGCACATGGCTCAGCTGAGGCTGGAATCCAGTTTCAGACCCCCATGTCTTAAATGCTGGGCAGAGCTCCTAGCTGAACTTCCTGCTCTGCTAAGCTTGGGAGACAATGTCACTAGGACCAGAGGAACCCTGGGGAAGGCAGGAACTAAGGATGTCAAGCAGAATGCCCCAAAGTATCATGTCCTTCCCACCAGGAGGGCCGTGTAGCCATTACGAGGGTGGCCAACCTTCTGCTATGTATGTA
.......................................................................................................................................((((((((((((.(((((..((...((.....))...))....))).)).)).)))))))..)))..................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR073954(GSM629280)
total RNA. (blood)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR060845(GSM561991)
total RNA. (brain)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		mjTestesWT3()
Testes Data. (testes)		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR525243(SRA056111/SRX170319)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		SRR037909(GSM510446)
newborn_rep2. (total RNA)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		mjTestesKO8()
Testes Data. (Zcchc11 testes)
........................................................................................................................................TGGGGAAGGCAGGAACTAAGG.............................................................................................21117.0017.00-3.00--1.00----1.00-1.00---1.00---1.00---1.00-1.00----1.001.00-1.00---------1.00-----------1.00-1.00-1.00---
..........................................................................................................................................................................................................................ACGAGGGTGGCCAACCTTCT............2018.008.006.00-----------1.00---------------------------1.00----------------------
........................................................................................................................................TGGGGAAGGCAGGAACTAAG..............................................................................................2018.008.00-3.001.00-------------------------------1.00------1.00---------1.00--------1.00--
................................................................................................................................................................................AAAGTATCATGTCCTTCCCACCAGT.................................................255.000.00----------2.00----1.00-----------------------1.00----------------1.00------
.......................................................................................................................................CTGGGGAAGGCAGGAACTAAGG.............................................................................................2215.005.00-1.00-1.00--1.00---------------------1.00---1.00------------------------------
..........................................................................................................................................................................................................................ACGAGGGTGGCCAACCTTCTGCT.........2314.004.003.00-----1.00--------------------------------------------------------
........................................................................................................................................TGGGGAAGGCAGGAACTAAGA.............................................................................................2113.008.00--------1.00---------2.00--------------------------------------------
........................................................................................................................................TGGGGAAGGCAGGAACTAAGGA............................................................................................2213.003.00-----------------1.00---1.00-----------------------1.00-----------------
.......................................................................................................................TAGGACCAGAGGAACCCTGGGGAAGGCAGGAACTAAGGATGTCAAGCAGAATGCCCCAAAGTATCATGTCCTTCCCACCAGAAA...............................................842.000.00-------2.00-------------------------------------------------------
.......................................................................................................................................CTGGGGAAGGCAGGAACT.................................................................................................1812.002.00-----2.00---------------------------------------------------------
...................................................................................................................................................................................................................AGCCATTACGAGGGTGGCCAACCT...............2412.002.001.00---------1.00----------------------------------------------------
........................................................................................................................................TGGGGAAGGCAGGAACTAAGGAA...........................................................................................2312.003.00---------2.00-----------------------------------------------------
..........................................................................................................................................................................................................GGGCCGTGTAGCCATTACGAGGGT........................2412.002.002.00--------------------------------------------------------------
........................................................................................CTGCTCTGCTAAGCTTGGGAGACAATGT......................................................................................................................................2811.001.00--------------------------------------------------1.00------------
.......................................................................................................................................CTGGGGAAGGCAGGAACTAAGGATGTCA.......................................................................................2811.001.00------------------------------------------1.00--------------------
......................................................................................................TTGGGAGACAATGTCAG...................................................................................................................................171.000.00--------------------------------------1.00------------------------
..........................................................................................................................................GGGAAGGCAGGAACTAAGGATT..........................................................................................221.000.00-1.00-------------------------------------------------------------
..............................................................................................................................AGAGGAACCCTGGGGAAGGCAGGAACTAAGGATGTCAAGCAGAATGCCCCAAAGTATCATGTCCTTCCCACCAG..................................................7411.001.00-------1.00-------------------------------------------------------
.......................................................................................................................................................................................................................ATTACGAGGGTGGCCAACC................1911.001.00------1.00--------------------------------------------------------
................................................................................................................................................................................AAAGTATCATGTCCTTCCCACCAT..................................................241.000.00--1.00------------------------------------------------------------
......TAGCACATGGCTCAGCTGAGGCTGG...........................................................................................................................................................................................................................2511.001.00----------------------------------------------1.00----------------
................................................................................................................................................................................AAAGTATCATGTCCTTCCCACC....................................................2211.001.00--1.00------------------------------------------------------------
........................................................................................................................................TGGGGAAGGCAGGAACTAAGGATGT.........................................................................................2511.001.00-----------------------------------1.00---------------------------
......................................................................................................................................CCTGGGGAAGGCAGGAACTAAGG.............................................................................................2311.001.00---------------------------1.00-----------------------------------
......................................................................................................................................CCTGGGGAAGGCAGGAACTAAGGA............................................................................................2411.001.00----1.00----------------------------------------------------------
..............................................................................GCTGAACTTCCTGCTCTGC.........................................................................................................................................................1911.001.00-------------------------------------------------1.00-------------
.......................................................................................................................................CTGGGGAAGGCAGGAACTAAGGATG..........................................................................................2511.001.00------------------------------------1.00--------------------------
.......................................................................................................................................CTGGGGAAGGCAGGAACTAAGGAC...........................................................................................241.000.00----1.00----------------------------------------------------------
.......................................................................................................................................CTGGGGAAGGCAGGAACTAATGT............................................................................................231.000.00----------------------------------------------------1.00----------
.........................................................................................................................................................................................................AGGGCCGTGTAGCCATTACGAGG..........................2311.001.00-----------------------------------------------------1.00---------
...................................................................................................................................................................................................ACCAGGAGGGCCGTGTGGGT...................................201.000.00---1.00-----------------------------------------------------------
...................................................................................................................................................................................................................AGCCATTACGAGGGTGGCCAACCTT..............2511.001.00------------1.00--------------------------------------------------
.................................................................................................................................................CAGGAACTAAGGATGAAGC......................................................................................191.000.00-----------------1.00---------------------------------------------
.............TGGCTCAGCTGAGGCTGCTCT........................................................................................................................................................................................................................211.000.00------------------------------------------------1.00--------------
...................................................................................................................................................GGAACTAAGGATGTCAAGCAGAATGCCC...........................................................................2811.001.00--------------------------------------------1.00------------------
.......................................................................................................................................CTGGGGAAGGCAGGAACTA................................................................................................1911.001.00-------------1.00-------------------------------------------------
................................................................................................................................................................................AAAGTATCATGTCCTTCCCAC.....................................................2111.001.00--1.00------------------------------------------------------------
........................................................................................................................................TGGGGAAGGCAGGAACTAATG.............................................................................................2111.001.00--------------------1.00------------------------------------------
........................................................................................................................................TGGGGAAGGCAGGAACTAAA..............................................................................................2011.001.00----------------1.00----------------------------------------------
........................................................................................................................................TGGGGAAGGCAGGAACTAA...............................................................................................1911.001.00------------------------------------------------------1.00--------
..................................................................................................................................................AGGAACTAAGGATGTCAAGCAGA.................................................................................2311.001.00----------------------------------------------------------1.00----
......................................................................................................................................CCTGGGGAAGGCAGGAACTAAGGAT...........................................................................................2511.001.00--------------1.00------------------------------------------------
......................................................................................................................................................................AGAATGCCCCAAAGTATCATGTCCTTCC........................................................2811.001.00----------------------1.00----------------------------------------
........................................................................................................................................TGGGGAAGGCAGGAACTAAGGT............................................................................................2211.0017.00-----------1.00---------------------------------------------------
..............................................................................................TGCTAAGCTTGGGAGACAATGTCACT..................................................................................................................................2611.001.00-----------------------------------------------1.00---------------
...................................................................................................................................................................................................ACCAGGAGGGCCGTGTGG.....................................181.000.00--------1.00------------------------------------------------------
........................................................................................................................................TGGGGAAGGCAGGAACTAAGGAAA..........................................................................................2411.003.00----------------1.00----------------------------------------------
.......................................................................................................................................CTGGGGAAGGCAGGAACTAAG..............................................................................................2111.001.00---1.00-----------------------------------------------------------
.......................................................................................................................................CTGGGGAAGGCAGGAAC..................................................................................................1721.001.00--------------------------1.00------------------------------------
.......................................................................................................................TAGGACCAGAGGAACC...................................................................................................................1620.500.50-------------------------------------------------------------0.50-
.....................................................................................................................................................................................................................................CAACCTTCTGCTATGT.....1630.330.33-------------------0.33-------------------------------------------

Antisense strand
CTTGGTTAGCACATGGCTCAGCTGAGGCTGGAATCCAGTTTCAGACCCCCATGTCTTAAATGCTGGGCAGAGCTCCTAGCTGAACTTCCTGCTCTGCTAAGCTTGGGAGACAATGTCACTAGGACCAGAGGAACCCTGGGGAAGGCAGGAACTAAGGATGTCAAGCAGAATGCCCCAAAGTATCATGTCCTTCCCACCAGGAGGGCCGTGTAGCCATTACGAGGGTGGCCAACCTTCTGCTATGTATGTA
.......................................................................................................................................((((((((((((.(((((..((...((.....))...))....))).)).)).)))))))..)))..................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR073954(GSM629280)
total RNA. (blood)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR060845(GSM561991)
total RNA. (brain)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		mjTestesWT3()
Testes Data. (testes)		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR525243(SRA056111/SRX170319)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		SRR037909(GSM510446)
newborn_rep2. (total RNA)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		mjTestesKO8()
Testes Data. (Zcchc11 testes)
.....................................................................................................................................................................................................................................CAACCTTCTGCTATGCT.... 171.000.00-------------1.00-------------------------------------------------
...................................................................................ACTTCCTGCTCTGCTACT..................................................................................................................................................... 181.000.00-----1.00---------------------------------------------------------
..............................................................................................................................................................................................................................GGGTGGCCAACCTTCGGG.......... 181.000.00-------------------------------------1.00-------------------------
.....................................................................................................................................................................................................................................CAACCTTCTGCTATGCTGG.. 191.000.00--------1.00------------------------------------------------------
................................................CCATGTCTTAAATGCTGGGCAGAGCTCCT............................................................................................................................................................................. 2911.001.00--------------1.00------------------------------------------------
..............................................................................................................................................................................CCAAAGTATCATGTCCTTCCCACCAGGA................................................ 2811.001.00------------------------1.00--------------------------------------
........................................................................................................GGGAGACAATGTCACTAGGACCAGA......................................................................................................................... 2511.001.00-----------------------------1.00---------------------------------
..................................................................................................................................................................................AGTATCATGTCCTTCCC....................................................... 1730.330.33--------------------------------------------------------------0.33