ID: uc008omb.4
GENE: Zgpat(5)
chr2:181114345-181114528+


(5)
AGO2.ip 		(4)
B-CELL 		(11)
BRAIN 		(3)
CELL-LINE 		(1)
DCR.mut 		(2)
DGCR8.mut 		(10)
EMBRYO 		(8)
ESC 		(2)
FIBROBLAST 		(2)
HEART 		(1)
LIVER 		(3)
LYMPH 		(11)
OTHER 		(1)
OTHER.mut 		(2)
PANCREAS 		(3)
PIWI.ip 		(4)
SPLEEN 		(7)
TESTES

Sense strand
GGGCATTGGCTCCAAACTCCTCGTCAAGATGGGCTATGAGTTTGGCAAGGGTGAGTGCCTGCTGCCCTGAGTTGAGAGGGAGTCCTTAACACAGCTCAAGGTCTAGCAGGTAGCACAGCCTCTGTCTTTCTCAGGTTTGGGCCGGCATGCAGAAGGCCGGGTGGAGCCCATCCATGCTGTAGTG
..................................................(((..(((((((((((.(((((((.((((....))))....))))))).)))..)))))))).)))....................................................................
..................................................51.....................................................................122............................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR095853(SRX039174)
"sequencing of miRNA from wild type and disea. (heart)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR037919(GSM510457)
e12p5_rep1. (embryo)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR206941(GSM723282)
other. (brain)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)
...............................................................................................TCAAGGTCTAGCAGGTAGCACAG..................................................................23118.0018.00-3.001.001.001.00--1.00----------1.00---1.00--1.001.00-1.00----------------1.00-------1.00--1.00-1.00----1.00---1.00
...............................................................................................TCAAGGTCTAGCAGGTAGCACAGT.................................................................24118.0018.00--2.002.00----3.00---1.00--------1.00--2.001.00--1.001.00--1.00------------------1.00--1.00-------1.00-----
...............................................................................................TCAAGGTCTAGCAGGTAGCACAGC.................................................................24116.0016.00-5.002.002.001.00-2.001.00--------------1.00-----------------------1.00----------1.00----------
...............................................................................................TCAAGGTCTAGCAGGTAGCACAGA.................................................................2418.0018.001.00--2.00-1.00-2.00--1.00-------1.00-------------------------------------------------
...............................................................................................TCAAGGTCTAGCAGGTAGCACA...................................................................2215.005.001.00--------------------1.00--------1.00------1.00---1.00--------------------------
..................................................GTGAGTGCCTGCTGCCCTGAGTT...............................................................................................................2315.005.003.00---------1.00-------------------------------------------------1.00-------
...............................................................................................TCAAGGTCTAGCAGGTAGCA.....................................................................2014.004.00----2.00-----------1.00----------------1.00----------------------------------
...............................................................................................TCAAGGTCTAGCAGGTAGCAC....................................................................2114.004.00------1.00------------1.00------1.00----------------------------------1.00------
..........................................................................................ACAGCTCAAGGTCTAGCAGGTAG.......................................................................2314.004.002.00------------2.00------------------------------------------------------
.............................................................................................................GTAGCACAGCCTCTGTCTTTCTCAG..................................................2513.003.00--------------3.00-----------------------------------------------------
..................................................GTGAGTGCCTGCTGCCCTGAGT................................................................................................................2213.003.001.00----1.00-------------------------------------------1.00------------------
...............................................................................................TCAAGGTCTAGCAGGTAG.......................................................................1813.003.002.00------------1.00------------------------------------------------------
..................................................GTGAGTGCCTGCTGCCCTGAGTTGAGAGGGAGTCCTTAACACAGCTCAAGGTCTAGCAGGTAGCACAGCCTCTGTCTTT.......................................................7913.003.00-----------3.00--------------------------------------------------------
..............................................................................................CTCAAGGTCTAGCAGGTAGCACATTAT...............................................................272.000.00---------------------------2.00----------------------------------------
......................GTCAAGATGGGCTATGAGTTTGGCAAGG......................................................................................................................................2812.002.00--------2.00-----------------------------------------------------------
...................CTCGTCAAGATGGGCTATG..................................................................................................................................................1912.002.00----------2.00---------------------------------------------------------
...............................................................................................TCAAGGTCTAGCAGGTAGCACAGCT................................................................2512.0016.00-----2.00--------------------------------------------------------------
..............................................................................................CTCAAGGTCTAGCAGGTAG.......................................................................1912.002.001.00------------------------------------------------------1.00------------
..........................................................................................ACAGCTCAAGGTCTAGCAGGTAGC......................................................................2412.002.00-----1.001.00-------------------------------------------------------------
.................TCCTCGTCAAGATGGGCTATGAG................................................................................................................................................2312.002.00--------------------1.00------------------1.00----------------------------
...............................................................................................TCAAGGTCTAGCAGGTAGA......................................................................1912.003.001.00---------------------------------------1.00---------------------------
..........................AGATGGGCTATGAGTTTGGCAAGGGT....................................................................................................................................2612.002.00---------1.00-------------------------------------------------1.00--------
....ATTGGCTCCAAACTCCTCGTCA..............................................................................................................................................................2211.001.001.00-------------------------------------------------------------------
..............................................................................................CTCAAGGTCTAGCAGGTAGCACAG..................................................................2411.001.00-------------------------------------------1.00------------------------
...............................................................................................TCAAGGTCTAGCAGGTAGCACGT..................................................................2311.004.00---------------1.00----------------------------------------------------
...................................................................................................................................................TGCAGAAGGCCGGGTGGAGCCCATCCATG........2911.001.00-----------------------1.00--------------------------------------------
..................................................GTGAGTGCCTGCTGCCCTGAGTTGAGAGGGAGTCCTTAACACAGCTCAAGGTCTAGCAGGTAGCACAGCCTCTGTCTTTCTCAG..................................................8411.001.00-----------1.00--------------------------------------------------------
..........................AGATGGGCTATGAGTTTGGCAAGGG.....................................................................................................................................2511.001.00--------------------------------------------1.00-----------------------
...............................................................................................TCAAGGTCTAGCAGGTAGCACTTAT................................................................2511.004.00--1.00-----------------------------------------------------------------
.......................................................................................................TAGCAGGTAGCACAGCCTCTGTCTT........................................................2511.001.00----------------------------------------------------------------1.00---
..........................................................................................ACAGCTCAAGGTCTAGCAGGTTT.......................................................................2311.001.00--1.00-----------------------------------------------------------------
............................................................................................AGCTCAAGGTCTAGCAGGTAGC......................................................................2211.001.001.00-------------------------------------------------------------------
..............................................................................................CTCAAGGTCTAGCAGGTAGCAC....................................................................2211.001.00----------------------------------1.00---------------------------------
....ATTGGCTCCAAACTCCTCGTC...............................................................................................................................................................2111.001.00--------------------------------------------------1.00-----------------
......................GTCAAGATGGGCTATGAGTTTGGCAA........................................................................................................................................2611.001.00---------1.00----------------------------------------------------------
..................................................GTGAGTGCCTGCTGCCCTGAGTTA..............................................................................................................2411.005.00------------------------------------------1.00-------------------------
........................CAAGATGGGCTATGAGTTT.............................................................................................................................................1911.001.00------1.00-------------------------------------------------------------
.............................TGGGCTATGAGTTTGGCAAGGGTTT..................................................................................................................................251.000.00-----------------1.00--------------------------------------------------
.............................TGGGCTATGAGTTTGGCAAG.......................................................................................................................................2011.001.00-1.00------------------------------------------------------------------
...............................................................................................TCAAGGTCTAGCAGGTAGCACAGCA................................................................2511.0016.00-------1.00------------------------------------------------------------
..........................................................................................ACAGCTCAAGGTCTAGCAGGTAGT......................................................................2411.004.00--1.00-----------------------------------------------------------------
.......................TCAAGATGGGCTATGAGTTTG............................................................................................................................................2111.001.00------------------------------------------------------------------1.00-
...........................GATGGGCTATGAGTTTGGCAAGGGTT...................................................................................................................................261.000.00---------1.00----------------------------------------------------------
.............................TGGGCTATGAGTTTGGCAAGGGTGAG.................................................................................................................................2611.001.00-----------------------1.00--------------------------------------------
..............................................................................................CTCAAGGTCTAGCAGGTAGCAT....................................................................221.000.00----1.00---------------------------------------------------------------
...............................................................................................TCAAGGTCTAGCAGGTAGCAAA...................................................................2211.004.00-------------------1.00------------------------------------------------
..............................................................................................CTCAAGGTCTAGCAGGTAGCACAGC.................................................................2511.001.00-1.00------------------------------------------------------------------
............................................................................................AGCTCAAGGTCTAGCAGGTAG.......................................................................2111.001.001.00-------------------------------------------------------------------
..........................................................................................ACAGCTCAAGGTCTAGCAGGTAGA......................................................................2411.004.00-----------------------------------1.00--------------------------------
..................................................GTGAGTGCCTGCTGCCCTGAGTTT..............................................................................................................2411.005.001.00-------------------------------------------------------------------
...........................................................................................CAGCTCAAGGTCTAGCAGGTAG.......................................................................2211.001.00-------------------------------1.00------------------------------------
................................................................................................CAAGGTCTAGCAGGTAGCACAGC.................................................................2311.001.00------------1.00-------------------------------------------------------
...............................GGCTATGAGTTTGGCAAGGGTGA..................................................................................................................................2311.001.00------------1.00-------------------------------------------------------
............................................................................................AGCTCAAGGTCTAGCAGGTAGCA.....................................................................2311.001.00--------------------1.00-----------------------------------------------
..........................................................................................ACAGCTCAAGGTCTAGCAGGT.........................................................................2111.001.00------------------------------------1.00-------------------------------
...............................................................................................TCAAGGTCTAGCAGGTAGCAA....................................................................2111.004.00---------------1.00----------------------------------------------------
......TGGCTCCAAACTCCTCGTCAAGATGGGC......................................................................................................................................................2811.001.00-----------------1.00--------------------------------------------------
.......................................................................................................TAGCAGGTAGCACAGCCTCTGT...........................................................2211.001.00----------------1.00---------------------------------------------------
..............................................................................................CTCAAGGTCTAGCAGGTAGCGAA...................................................................231.000.00----1.00---------------------------------------------------------------
...............................................................................................TCAAGGTCTAGCAGGTAGC......................................................................1911.001.00-----------------------------1.00--------------------------------------
...............................................................................................TCAAGGTCTAGCAGGTAGCACAGTAA...............................................................2611.0018.00----------------------------------------------------1.00---------------
......................GTCAAGATGGGCTATGAGTTTGGCA.........................................................................................................................................2511.001.00---------1.00----------------------------------------------------------
.....................................................AGTGCCTGCTGCCCTGAGTTG..............................................................................................................2111.001.00------------------------------------------------1.00-------------------
..............................................................................................CTCAAGGTCTAGCAGGTAGCAAA...................................................................231.000.00----1.00---------------------------------------------------------------
...............................................................................................TCAAGGTCTAGCAGGTA........................................................................1720.500.50-------------------------------0.50------------------------------------

Antisense strand
GGGCATTGGCTCCAAACTCCTCGTCAAGATGGGCTATGAGTTTGGCAAGGGTGAGTGCCTGCTGCCCTGAGTTGAGAGGGAGTCCTTAACACAGCTCAAGGTCTAGCAGGTAGCACAGCCTCTGTCTTTCTCAGGTTTGGGCCGGCATGCAGAAGGCCGGGTGGAGCCCATCCATGCTGTAGTG
..................................................(((..(((((((((((.(((((((.((((....))))....))))))).)))..)))))))).)))....................................................................
..................................................51.....................................................................122............................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR095853(SRX039174)
"sequencing of miRNA from wild type and disea. (heart)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR037919(GSM510457)
e12p5_rep1. (embryo)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR206941(GSM723282)
other. (brain)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)
.....................................................................................................................................................CAGAAGGCCGGGTGGATTT................ 191.000.00--------------------------------------1.00-----------------------------
.........CTCCAAACTCCTCGTGC.............................................................................................................................................................. 171.000.00-----------------------------------------------1.00--------------------
....................................................................................................GTCTAGCAGGTAGCAAAA.................................................................. 181.000.00-----------------------------------------------------------------1.00--
...........................................................................GAGGGAGTCCTTAAC.............................................................................................. 1520.500.50------------------------------0.50-------------------------------------