ID: uc008nkx.6
GENE: Gss(6)
chr2:155398862-155399111-


(1)
AGO.mut
(2)
AGO1.ip
(19)
AGO2.ip
(1)
AGO3.ip
(9)
B-CELL
(41)
BRAIN
(3)
CELL-LINE
(1)
DCR.mut
(1)
DGCR8.mut
(7)
EMBRYO
(7)
ESC
(4)
FIBROBLAST
(3)
HEART
(3)
KIDNEY
(17)
LIVER
(1)
LUNG
(2)
LYMPH
(14)
OTHER
(7)
OTHER.mut
(1)
OVARY
(3)
PIWI.ip
(1)
PIWI.mut
(5)
SKIN
(3)
SPLEEN
(19)
TESTES
(1)
THYMUS

Sense strand
ACCATCTCATCAGTCCCTCCTTTCTGTAGGACTGGCCTCAGATTCATGCTCTTCCTGCCCTTGCCCCAAGCCCCAAGTGCTGGGCTCACAGCCTGCGCCAGCAGGACTACTTGAGAAGCTGTGTTCTCACCTCTCTCTGAAGGAGCAGCAGGAAGGGCGAGGTCTGCGGCGACCCTGGCTCACTTGTGCTCTTTCTGCAGTGCGGTGGTGCTACTGATTGCTCAAGAGAAGGAAAGGAACATATTTGACC
..........................................................................................................................................(((((((((.((((..((((.(((((......))).)).)))).))))))))))))).......................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormmjLiverKO1()
Liver Data. (Zcchc11 liver)
mjLiverWT1()
Liver Data. (liver)
SRR553585(SRX182791)
source: Kidney. (Kidney)
mjLiverWT3()
Liver Data. (liver)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR553582(SRX182788)
source: Brain. (Brain)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)
mjTestesWT4()
Testes Data. (testes)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
mjLiverWT2()
Liver Data. (liver)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
GSM510444(GSM510444)
brain_rep5. (brain)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
SRR306530(GSM750573)
19-24nt. (ago2 brain)
SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)
SRR037906(GSM510442)
brain_rep3. (brain)
SRR206940(GSM723281)
other. (brain)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
SRR306537(GSM750580)
19-24nt. (ago2 brain)
SRR206939(GSM723280)
other. (brain)
SRR073954(GSM629280)
total RNA. (blood)
SRR306534(GSM750577)
19-24nt. (ago2 brain)
SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR073955(GSM629281)
total RNA. (blood)
SRR346415(SRX098256)
source: Testis. (Testes)
SRR306535(GSM750578)
19-24nt. (ago2 brain)
SRR038744(GSM527279)
small RNA-Seq. (brain)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
mjTestesWT3()
Testes Data. (testes)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
SRR059765(GSM562827)
DN3_control. (thymus)
SRR037904(GSM510440)
brain_rep1. (brain)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR206941(GSM723282)
other. (brain)
SRR077864(GSM637801)
18-30 nt small RNAs. (liver)
SRR077866(GSM637803)
18-30 nt small RNAs. (liver)
SRR206942(GSM723283)
other. (brain)
SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)
SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR306533(GSM750576)
19-24nt. (ago2 brain)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR037907(GSM510443)
brain_rep4. (brain)
Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)
SRR306529(GSM750572)
19-24nt. (ago2 brain)
SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)
RuiDcrWT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)
SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR059770(GSM562832)
Treg_Dicer. (spleen)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)
SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR095855BC3(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)
SRR402766(SRX117949)
source: ES PGK female cells. (ESC)
SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR038743(GSM527278)
small RNA-Seq. (dicer brain)
SRR042453(GSM539845)
mouse marginal zone B cells (spleen) [09-002]. (b cell)
GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)
SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)
SRR065046(SRR065046)
Tissue-specific Regulation of Mouse MicroRNA . (liver)
SRR029123(GSM416611)
NIH3T3. (cell line)
SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)
GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR037921(GSM510459)
e12p5_rep3. (embryo)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
SRR553584(SRX182790)
source: Heart. (Heart)
SRR037925(GSM510463)
e9p5_rep3. (embryo)
SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR077865(GSM637802)
18-30 nt small RNAs. (liver)
SRR038741(GSM527276)
small RNA-Seq. (brain)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
SRR306544(GSM750587)
19-24nt. (ago2 brain)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
GSM361430(GSM361430)
WholeCerebellum_1month_Ptc+-_Ink4c--_rep2. (brain)
SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)
SRR065045(SRR065045)
Tissue-specific Regulation of Mouse MicroRNA . (liver)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)
SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)
SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR306536(GSM750579)
19-24nt. (ago2 brain)
SRR065056(SRR065056)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)
SRR306532(GSM750575)
19-24nt. (ago2 brain)
SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)
SRR306528(GSM750571)
19-24nt. (ago2 brain)
SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)
SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)
SRR306531(GSM750574)
19-24nt. (ago2 brain)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR306538(GSM750581)
19-24nt. (ago2 brain)
SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAGT.................................................221328.00328.0055.0023.0027.0014.0010.007.0012.007.006.0011.0010.007.006.00-8.003.00-3.00--3.003.005.00-6.004.003.00-3.00-1.004.00-4.003.001.004.00-2.001.004.003.003.002.00-2.003.001.00-3.002.001.001.001.00-1.00---2.00-1.00-2.002.001.00-1.00-1.001.00-2.00--1.00----1.001.001.00-----1.00-1.001.001.001.001.00-----1.001.001.001.001.001.001.001.001.001.001.00------1.00----1.001.00--1.001.00-1.00-1.00--1.001.001.001.00--
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAG..................................................21149.0049.0013.003.003.002.001.005.00-----1.001.00-------2.00----2.00----2.00-------------1.00--2.001.00--1.00---------1.002.00----------1.00----------1.00--1.00-----------------------1.00-------------1.00------1.00-------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAGA.................................................22136.0049.001.00-2.003.00---5.003.00------6.00-----1.00------1.00--------3.00-2.00---1.001.001.00-----1.00--------1.00----------1.00-------1.00-----------------------------------1.00----1.00-------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCATT.................................................22112.002.00----1.00---2.00--3.001.00--------1.00------1.00------------------------------------1.00------------1.00---------------------------------1.00---------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAGATT...............................................24111.0049.00-10.00--1.00---------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TCTGAAGGAGCAGCAGGAAGGG.............................................................................................22111.0011.00-----------------1.008.00-------------------------------------------------2.00-----------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAGGA................................................2319.0049.00----------------9.00---------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAGTT................................................2318.00328.00---------------------1.00-------2.002.00----1.00-------------------------------1.00------------------1.00-----------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAA..................................................2115.002.00-3.00---------------2.00--------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGC....................................................1915.005.003.00-----------1.00--------------------------------------------------------1.00----------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAGAT................................................2315.0049.00---2.00--------1.00---------1.00------1.00--------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................CAAGAGAAGGAAAGGAACATATTTGACC2814.004.00-------------1.00-----2.00----------------------------------1.00-------------------------------------------------------------------------------------
............................................................................................................................................................................................................................CTCAAGAGAAGGAAAGGAACATATTTG...2714.004.00-------------1.00-----1.00----------------------------------1.00----------------------------1.00--------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAGC.................................................2214.0049.00--------1.00---------------------------------------2.00-----------------------------------------------1.00-------------------------------------------
.............................................................................................................................................................................................................................TCAAGAGAAGGAAAGGAACATATTTG...2614.004.00-------------1.00---------2.00-------------------------------------------------------------------------------------------------1.00------------------
...........................................................................................................................................................................................................................GCTCAAGAGAAGGAAAGGAACAT........2314.004.00---------------------------3.00-------------------------------------------------------------1.00--------------------------------------------------
....................................................................................................................................................................................CACTTGTGCTCTTTCTGCAGT.................................................2113.003.00--------------------1.00--------2.00--------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAGAA................................................2313.0049.00----------------------------------------------------------2.00-----------1.00---------------------------------------------------------------------
........................................................................................................................................................................................................................ATTGCTCAAGAGAAGGAAAGGAACAT........2613.003.00-------------2.00---------1.00--------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................ACTTGTGCTCTTTCTGCAGT.................................................2012.002.00---1.00----------------------------------1.00-----------------------------------------------------------------------------------------------------
.......................................................................................................................................TCTGAAGGAGCAGCAGGAAG...............................................................................................2012.002.00-----------------2.00--------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAGTAG...............................................2412.00328.00--------------1.00----------------------------------------------------------------------1.00------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAGTA................................................2312.00328.00-------------------------------------------------------1.00----1.00-------------------------------------------------------------------------------
..................................................................................................................................................................................................................................AGAAGGAAAGGAACATATT.....1922.002.00-------------------------------------1.00------------------1.00-----------------------------------------------------------------------------------
...........................................................................................................................................................................................................................GCTCAAGAGAAGGAAAGGAACA.........2212.002.00---------------------------2.00----------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCA...................................................2012.002.00-----1.00----------------------------------------------1.00---------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................TGCTCAAGAGAAGGAAAGGAACATATT.....2712.002.00-------------1.00---------1.00--------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................TACTGATTGCTCAAGAGAAGGAAAGGAACAT........3112.002.00--------------------------2.00-----------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAAGGAGCAGCAGGAAGGGCGAG.........................................................................................2411.001.00------------1.00-------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TCTGAAGGAGCAGCAGGAAGGGC............................................................................................2311.001.00--1.00-----------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................TACTGATTGCTCAAGAGAAGGAAAGGAACTT........311.000.00-------------------1.00------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................TCAAGAGAAGGAAAGGAACATATTTGAC.2811.001.00-----------------------------------------------------------------------------1.00--------------------------------------------------------------
.....................................................................................................................................................................................ACTTGTGCTCTTTCTGCAGA.................................................201.000.00--------------------1.00-----------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................TGGCTCACTTGTGCTCTTTCTGC....................................................2311.001.00--------------------------------------------1.00-----------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................ATTGCTCAAGAGAAGGAAAGGAACATA.......2711.001.00-------------------1.00------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................TCAAGAGAAGGAAAGGAACAT........2111.001.00------------------------------------------------------------------1.00-------------------------------------------------------------------------
.......................................................................................................................................TCTGAAGGAGCAGCAGGAAGGGCGAGGTCTGCGGCGACCCTGGCTCACTTGTGCTCTTTCTGCAGTTT...............................................681.000.00-------------------------------------------------------------------------------------------------------------------------------------1.00------
.....................................................................................................CAGGACTACTTGAGACGG...................................................................................................................................181.000.00-----------------------------------1.00--------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAGTTT...............................................2411.00328.00--------------------------------------------------1.00-----------------------------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAAT.................................................2211.002.00-----------------1.00--------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................AGAAGGAAAGGAACAGATT.....191.000.00--------------------------------------------------------1.00-----------------------------------------------------------------------------------
.......................................................................................................................................TCTGAAGGAGCAGCAGGAAAGG.............................................................................................221.000.00------------------1.00-------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCCGT.................................................2211.005.00-----------------------------------1.00--------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................CAAGAGAAGGAAAGGAACATT.......211.000.00---------------------------------------------------------1.00----------------------------------------------------------------------------------
................................................................................................................................................................................................................................AGAGAAGGAAAGGAACATAT......2011.001.00---------------------------------------------------------1.00----------------------------------------------------------------------------------
..................................................................................................................................................................................CTCACTTGTGCTCTTTCTG.....................................................1911.001.00---------------------1.00----------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGATTGCTCAAGAGAAGGAAAGGAACAT........2811.001.00-----------------------1.00--------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TCTGAAGGAGCAGCAGGAAGGGCGAGG........................................................................................2711.001.00------------------------------------------------------------------------------------------------------------------1.00-------------------------
..................................................................................................................................................AGCAGGAAGGGCGAGGTCTGAA..................................................................................221.000.00----------------------------------------------------------------------------------------------------------------------------1.00---------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCGGT.................................................2211.005.00-1.00------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................CTCAAGAGAAGGAAAGGAACATATTTGACC3011.001.00-------------------1.00------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................AGCAGGAAGGGCGAGGTCTGAAA.................................................................................231.000.00-----------------------------------------------------------------------------------------------1.00--------------------------------------------
..........................................................................................................................................................GGGCGAGGTCTGCGGC................................................................................1611.001.00---------------------------------------------------------------------------------------------------1.00----------------------------------------
..............................................................................................................................................................................................................................CAAGAGAAGGAAAGGAACATA.......2111.001.00--------------------------------------------------------------------------------------------------------------------------------1.00-----------
.......................................................................................................................................................................................................................GATTGCTCAAGAGAAGGAAAGGAACA.........2611.001.00------------------------------------------------------------------1.00-------------------------------------------------------------------------
..................................................................................................................................................AGCAGGAAGGGCGAGGTCTGTTT.................................................................................231.000.00-----------------------------------------------------1.00--------------------------------------------------------------------------------------
................................................................................................................................................................................................................................AGAGAAGGAAAGGAACATATTTG...2311.001.00--------------------------------------------------------------------------------------------------1.00-----------------------------------------
..................................................................................................................................................AGCAGGAAGGGCGAGGTCTGCAA.................................................................................231.000.00----------------------------------------------------------------------------1.00---------------------------------------------------------------
............................................................................................................................................................................................................................CTCAAGAGAAGGAAAGGAACATATTTGA..2811.001.00-------------------1.00------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TCTGAAGGAGCAGCAGGAAGGGCG...........................................................................................2411.001.00----------------------------------1.00---------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................TGGCTCACTTGTGCTTGA.........................................................181.000.00-------------------------------------------------------------------------------------------------1.00------------------------------------------
.......................................................................................................................................TCTGAAGGAGCAGCAGGAAGGGCGA..........................................................................................2511.001.00-------------1.00------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................TACTGATTGCTCAAGAGAAGGAAAGGACAAT........311.000.00--------------------------1.00-----------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................CAAGAGAAGGAAAGGAACA.........1911.001.00-----------------------------------------------------------------------------------------------------------------------1.00--------------------
........................................................................................CAGCCTGCGCCAGCAGT.................................................................................................................................................171.000.00-----------------------------------------------------------------------------------------------------------------1.00--------------------------
...................................................................................................................................................................................................................TACTGATTGCTCAAGAGAAGGAAAGG.............2611.001.00-------------1.00------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................GCTCAAGAGAAGGAAAGGAAC..........2111.001.00-----------------------------------------------------------------------1.00--------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAGTAAA..............................................2511.00328.00---1.00----------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................TTGCTCAAGAGAAGGAAAGGAACATATT.....2811.001.00-------------------1.00------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TCTGAAGGAGCAGCAGGAAGGGCGTAT........................................................................................2711.001.00----------1.00---------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCGGG.................................................2211.005.00---1.00----------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGAATT.................................................221.000.00--------------------------------------1.00-----------------------------------------------------------------------------------------------------
......................................................................................................AGGACTACTTGAGAAGCT..................................................................................................................................1820.500.50----------------------------------------------------0.50---------------------------------------------------------------------------------------
........................................................................................................................................................................................TGTGCTCTTTCTGCAGT.................................................1740.250.25---------0.25----------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCT......................................................1740.250.25-----------------------------------------0.25--------------------------------------------------------------------------------------------------
.....................................................................................................................................................................GCGGCGACCCTGG........................................................................1380.250.25------------------------------------------0.12------------------------------------------------------------------------------------------------0.12

Antisense strand
ACCATCTCATCAGTCCCTCCTTTCTGTAGGACTGGCCTCAGATTCATGCTCTTCCTGCCCTTGCCCCAAGCCCCAAGTGCTGGGCTCACAGCCTGCGCCAGCAGGACTACTTGAGAAGCTGTGTTCTCACCTCTCTCTGAAGGAGCAGCAGGAAGGGCGAGGTCTGCGGCGACCCTGGCTCACTTGTGCTCTTTCTGCAGTGCGGTGGTGCTACTGATTGCTCAAGAGAAGGAAAGGAACATATTTGACC
..........................................................................................................................................(((((((((.((((..((((.(((((......))).)).)))).))))))))))))).......................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormmjLiverKO1()
Liver Data. (Zcchc11 liver)
mjLiverWT1()
Liver Data. (liver)
SRR553585(SRX182791)
source: Kidney. (Kidney)
mjLiverWT3()
Liver Data. (liver)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR553582(SRX182788)
source: Brain. (Brain)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)
mjTestesWT4()
Testes Data. (testes)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
mjLiverWT2()
Liver Data. (liver)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
GSM510444(GSM510444)
brain_rep5. (brain)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
SRR306530(GSM750573)
19-24nt. (ago2 brain)
SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)
SRR037906(GSM510442)
brain_rep3. (brain)
SRR206940(GSM723281)
other. (brain)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
SRR306537(GSM750580)
19-24nt. (ago2 brain)
SRR206939(GSM723280)
other. (brain)
SRR073954(GSM629280)
total RNA. (blood)
SRR306534(GSM750577)
19-24nt. (ago2 brain)
SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR073955(GSM629281)
total RNA. (blood)
SRR346415(SRX098256)
source: Testis. (Testes)
SRR306535(GSM750578)
19-24nt. (ago2 brain)
SRR038744(GSM527279)
small RNA-Seq. (brain)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
mjTestesWT3()
Testes Data. (testes)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
SRR059765(GSM562827)
DN3_control. (thymus)
SRR037904(GSM510440)
brain_rep1. (brain)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR206941(GSM723282)
other. (brain)
SRR077864(GSM637801)
18-30 nt small RNAs. (liver)
SRR077866(GSM637803)
18-30 nt small RNAs. (liver)
SRR206942(GSM723283)
other. (brain)
SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)
SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR306533(GSM750576)
19-24nt. (ago2 brain)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR037907(GSM510443)
brain_rep4. (brain)
Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)
SRR306529(GSM750572)
19-24nt. (ago2 brain)
SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)
RuiDcrWT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)
SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR059770(GSM562832)
Treg_Dicer. (spleen)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)
SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR095855BC3(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)
SRR402766(SRX117949)
source: ES PGK female cells. (ESC)
SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR038743(GSM527278)
small RNA-Seq. (dicer brain)
SRR042453(GSM539845)
mouse marginal zone B cells (spleen) [09-002]. (b cell)
GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)
SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)
SRR065046(SRR065046)
Tissue-specific Regulation of Mouse MicroRNA . (liver)
SRR029123(GSM416611)
NIH3T3. (cell line)
SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)
GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR037921(GSM510459)
e12p5_rep3. (embryo)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
SRR553584(SRX182790)
source: Heart. (Heart)
SRR037925(GSM510463)
e9p5_rep3. (embryo)
SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR077865(GSM637802)
18-30 nt small RNAs. (liver)
SRR038741(GSM527276)
small RNA-Seq. (brain)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
SRR306544(GSM750587)
19-24nt. (ago2 brain)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
GSM361430(GSM361430)
WholeCerebellum_1month_Ptc+-_Ink4c--_rep2. (brain)
SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)
SRR065045(SRR065045)
Tissue-specific Regulation of Mouse MicroRNA . (liver)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)
SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)
SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR306536(GSM750579)
19-24nt. (ago2 brain)
SRR065056(SRR065056)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)
SRR306532(GSM750575)
19-24nt. (ago2 brain)
SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)
SRR306528(GSM750571)
19-24nt. (ago2 brain)
SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)
SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)
SRR306531(GSM750574)
19-24nt. (ago2 brain)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR306538(GSM750581)
19-24nt. (ago2 brain)
SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
............................................CATGCTCTTCCTGCCCTTGCCCCAA..................................................................................................................................................................................... 2511.001.00--------------------------------1.00-----------------------------------------------------------------------------------------------------------
....TCTCATCAGTCCCTCCTTTCTGT............................................................................................................................................................................................................................... 2311.001.00--------------------------------1.00-----------------------------------------------------------------------------------------------------------
....TCTCATCAGTCCCTCGCAT................................................................................................................................................................................................................................... 191.000.00--------------------------------------------------------------------------------------------------------------------1.00-----------------------
..................................................................................................................................CTCTCTCTGAAGGAGTTGG..................................................................................................... 191.000.00----------------------------------------------------------------------------------------------------------------------------------1.00---------
......................................................................................................................................................................................CTTGTGCTCTTTCTGCAGTGCGGTGG.......................................... 2611.001.00-----------------------1.00--------------------------------------------------------------------------------------------------------------------
....................................................................................................................AGCTGTGTTCTCACCTCT.................................................................................................................... 1811.001.00---------------------------------------1.00----------------------------------------------------------------------------------------------------
....................................................................................................................AGCTGTGTTCTCACCTCTCTCTG............................................................................................................... 2311.001.00--------------------------------1.00-----------------------------------------------------------------------------------------------------------
.CCATCTCATCAGTCCCTCCT..................................................................................................................................................................................................................................... 2011.001.00--------------------------------1.00-----------------------------------------------------------------------------------------------------------
................................................................................................................................................GCAGCAGGAAGGGCGAGGTCTG.................................................................................... 2211.001.00--------------------------------------------------------------------------1.00-----------------------------------------------------------------
..............................................................................................................................................................................CTGGCTCACTTGTGCTCTTTCTGCAGTG................................................ 2811.001.00-------------1.00------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAGT................................................. 2211.001.00----------------------------------------------------------------------------------------------------------------------1.00---------------------
.................................................................................................................................................................................GCTCACTTGTGCTCTTTCTGCAGTGCGGT............................................ 291.000.00-------------1.00------------------------------------------------------------------------------------------------------------------------------
.CCATCTCATCAGTCCCTC....................................................................................................................................................................................................................................... 1830.330.33------------------------------------------------------------------------------------------------------------------------------------------0.33-