ID: uc008nht.3
GENE: 8430427H17Rik(4)
chr2:153243566-153243745-


(1)
AGO.mut 		(1)
AGO1.ip 		(11)
AGO2.ip 		(1)
AGO3.ip 		(1)
B-CELL 		(27)
BRAIN 		(4)
CELL-LINE 		(2)
DCR.mut 		(3)
DGCR8.mut 		(10)
EMBRYO 		(3)
ESC 		(1)
FIBROBLAST 		(2)
KIDNEY 		(6)
LIVER 		(8)
OTHER 		(1)
OTHER.ip 		(12)
OTHER.mut 		(7)
PIWI.ip 		(1)
PIWI.mut 		(3)
SKIN 		(42)
TESTES 		(1)
UTERUS

Sense strand
AGATGAATGACTCAGAGGGCATGGACCCCGAGCGGCTCAAGGCCTTCAACGTGAGCACCAGGCAGGGCTGGTGGGACACCGATGGGTCTAAGGCAGGGCCAGTCCTCTCCCATAGCCTGTGTCTCCCCAGATGTTCGTGCGGCTCTTCGTGGATGAGAACCTGGACCGCATGGTGCCCAT
...........................................................((((((((((.((((((....(((.(((((......))))).)))...))))))))))).)))))........................................................
..................................................51.............................................................................130................................................
SizePerfect hitTotal NormPerfect NormSRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		GSM475281(GSM475281)
total RNA. (testes)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		mjTestesWT1()
Testes Data. (testes)		mjTestesWT4()
Testes Data. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		mjTestesWT3()
Testes Data. (testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR206940(GSM723281)
other. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR037937(GSM510475)
293cand2. (cell line)		mjLiverWT3()
Liver Data. (liver)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR073954(GSM629280)
total RNA. (blood)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR206942(GSM723283)
other. (brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR553586(SRX182792)
source: Testis. (testes)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR037902(GSM510438)
testes_rep3. (testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		GSM510444(GSM510444)
brain_rep5. (brain)		GSM261958(GSM261958)
oocytesmallRNA-24to30. (oocyte)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR028731(GSM400968)
Mili-wt-associated. (testes)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR037922(GSM510460)
e12p5_rep4. (embryo)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR037903(GSM510439)
testes_rep4. (testes)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR206941(GSM723282)
other. (brain)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		GSM509276(GSM509276)
small RNA cloning by length. (testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
.................................................................................................................................................TTCGTGGATGAGAACCTGGACCGCATG........27141.0041.00--18.00-----1.006.006.00---------4.00------1.001.00------------------1.00----1.00-1.00-------------------------1.00---------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGA........................................................................................................26131.0031.00-2.00-4.0011.001.001.00-1.00-----1.00--2.00-1.00----2.00---1.00--------2.00----------------------------------1.00-------------------------------1.00---
.........................................................................................................TCTCCCATAGCCTGTGTCTCCCC....................................................23123.0023.00---------------1.003.00-------------1.002.00--4.00--------1.00-----------2.00-2.00------1.001.00---------1.00-1.00-----1.00----1.00----1.00--------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGACACCGATGGGTCTAAGGCAGGGCCAGTCCTCTCCCATAGCCTGTGTCTCCCCAG..................................................80121.0021.0021.00-----------------------------------------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGAC.......................................................................................................27114.0014.00-5.00-4.001.00-1.00-1.00------------------1.00-------1.00------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTG...........................................................................................................23112.0012.00-5.00-1.001.001.001.00-1.00-------------------1.00---------1.00---------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGG.........................................................................................................25110.0010.00-4.00-1.001.00------------1.00-3.00----------------------------------------------------------------------------------------
.........................................................................................................TCTCCCATAGCCTGTGTCTCCCCAGT.................................................26110.002.00-----------3.00----1.00----------------------2.00-------------------------1.00----1.00-------------1.00------1.00----------------
..................................................GTGAGCACCAGGCAGGGCTGGTGG..........................................................................................................2419.009.00-2.00-2.002.001.001.00------------------1.00----------------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGACACCGATGGGTCTAAGGCAGGGCCAGTCCTCTCCCATAGCCTGTGTCTCCCCAGTT................................................8219.0021.009.00-----------------------------------------------------------------------------------------------------------
.................................................................................................................................................TTCGTGGATGAGAACCTGGACCGCAT.........2618.008.00--4.00------1.001.00---------1.00------1.00--------------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGACACCGATGGGTCTAAGGCAGGGCCAGTCCTCTCCCATAGCCTGTGTCTCCCCAGT.................................................8117.0021.007.00-----------------------------------------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGACACCGATGGGTCTAAGGCAGGGCCAGTCCTCTCCCATAGCCTGTGTCTCCCCA...................................................7917.007.007.00-----------------------------------------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGT............................................................................................................2216.006.00-1.00-1.00----1.00--------1.00-1.00---------------------------------------1.00------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGACT......................................................................................................2816.0014.00-2.00-2.00----1.00------------------1.00--------------------------------------------------------------------------------
.........................................................................................................TCTCCCATAGCCTGTGTCTCCC.....................................................2216.006.00-----------1.00---1.001.00-----------------------1.00--------------------------------1.00--1.00-------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGACAC.....................................................................................................2916.006.00---1.00-5.00------------------------------------------------------------------------------------------------------
............................................................GGCAGGGCTGGTGGGAC.......................................................................................................1725.505.50-------------5.50----------------------------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTG..............................................................................................................2015.005.00-1.00------------------------------------1.00------1.00---1.00----------------1.00-----------------------------------------
.........................................................................................................TCTCCCATAGCCTGTGTCTC.......................................................2015.005.00-----------1.00---1.00------------------------2.00--------------------1.00----------------------------------------------
...........................................................AGGCAGGGCTGGTGGGAC.......................................................................................................1815.005.00-----------------1.001.00-----------------------2.00----------1.00------------------------------------------------------
.....................................................................................................................................................TGGATGAGAACCTGGACAAAA..........215.000.00--------------------------5.00---------------------------------------------------------------------------------
....................................................................................................................................GTTCGTGCGGCTCTTCGTGGAT..........................2214.004.00-------1.00----------1.00--1.00------------------------------------1.00-------------------------------------------------
.........................................................................................................TCTCCCATAGCCTGTGTCTCCCCA...................................................2414.004.00------------------1.00----1.001.00------------------------------------1.00----------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGG.............................................................................................................2114.004.00-----2.00---------2.00--------------------------------------------------------------------------------------------
.........................................................................................................TCTCCCATAGCCTGTGTCTCC......................................................2114.004.00----------------1.00------1.00---------------------------------------------------------1.00-----1.00--------------------
........................................................ACCAGGCAGGGCTGGTGTGCA.......................................................................................................214.000.00---------------------------------4.00--------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGAA.......................................................................................................2714.0031.00-1.00----2.00------------------1.00----------------------------------------------------------------------------------
.........................................................................................................TCTCCCATAGCCTGTGTCT........................................................1914.004.00---------------1.00---------------1.00-----------1.00-----------------------------------------------------------1.00----
..................................................GTGAGCACCAGGCAGGGCTGGTGT..........................................................................................................2414.0012.00----1.001.00-------------------1.00------------------------------------------------1.00---------------------------------
...................................................TGAGCACCAGGCAGGGCTGGTGGGACACCGATGGGTCTAAGGCAGGGCCAGTCCTCTCCCATAGCCTGTGTCTCCCCAT..................................................794.000.004.00-----------------------------------------------------------------------------------------------------------
..........................................................................................................................................................GAGAACCTGGACCGCATGGT......2014.004.00-------1.00-------------2.00-1.00------------------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGACACCGATGGGTCTAAGGCAGGGCCAGTCCTCTCCCATAGCCTGTGTCTCCCC....................................................7813.003.003.00-----------------------------------------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGATA......................................................................................................2813.0031.00-1.00------2.00---------------------------------------------------------------------------------------------------
..........................................................................................................CTCCCATAGCCTGTGTCTCCCCAT..................................................243.000.00----------------------------------------------2.00-----------------1.00-------------------------------------------
..............................................................CAGGGCTGGTGGGACACCGATGGG..............................................................................................2413.003.00-----------------------------3.00------------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGTTT.......................................................................................................2713.009.00-2.00-------1.00--------------------------------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGAT.......................................................................................................2713.0031.00-1.00-1.00----------1.00---------------------------------------------------------------------------------------------
...........................................................AGGCAGGGCTGGTGGGACA......................................................................................................1913.003.00--------------------------------1.00---1.001.00----------------------------------------------------------------------
....GAATGACTCAGAGGGCAT..............................................................................................................................................................1813.003.00-------2.00-------------------------------------1.00--------------------------------------------------------------
................................................................................................................................................CTTCGTGGATGAGAACCTGGACCGCA..........2613.003.00------------3.00-----------------------------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGT.........................................................................................................2512.009.00---1.00---------------1.00----------------------------------------------------------------------------------------
..................................................................................................................................ATGTTCGTGCGGCTCTTCGTGGAT..........................2412.002.00-------------------------------------------------1.00--------1.00-------------------------------------------------
....GAATGACTCAGAGGGCATGGACCCC.......................................................................................................................................................2512.002.00---------------------1.001.00-------------------------------------------------------------------------------------
..................................................................................................................................................TCGTGGATGAGAACCTGGACCGCA..........2412.002.00------------------1.00--------------------------------------------------------------------------------------1.00--
..................................................GTGAGCACCAGGCAGGGCTGGTGTGAT.......................................................................................................2712.0012.00------2.00-----------------------------------------------------------------------------------------------------
.........................................................................................................TCTCCCATAGCCTGTGTCTCCCCAG..................................................2512.002.00------------------------1.00------------------------------------------1.00----------------------------------------
.....................................................AGCACCAGGCAGGGCTGGTGGGACACCGA..................................................................................................2912.002.00--1.00-------1.00-------------------------------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGACACCGATGGGTCTAAGGCAGGGCCAGTCCTCTCCCATAGCCTGTGTCTCCC.....................................................7712.002.002.00-----------------------------------------------------------------------------------------------------------
.................................................................................................................................................TTCGTGGATGAGAACCTGGACCGCATGGTGCC...3212.002.00-------------2.00----------------------------------------------------------------------------------------------
.......................................................................TGGGACACCGATGGGTCTAAGGCAGGGCCAGTC............................................................................3312.002.00---------------------------------------------------------------2.00--------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGA.........................................................................................................2512.009.00-1.00----------------------------------------------------------------------------------------1.00-----------------
........................................................................................................................................................ATGAGAACCTGGACCGCATGG.......2112.002.00-----------------------------------------------------1.00-------------------------1.00----------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGACA......................................................................................................2812.002.00-1.00--------------------------------------------------------------------------------1.00-------------------------
.........................................................................................................TCTCCCATAGCCTGTGTCTCCCT....................................................2312.006.00--------------------------------1.00-----------------------------------------------------------------1.00---------
...TGAATGACTCAGAGGGCATGGACCCCGAGC...................................................................................................................................................3012.002.00-----------------1.00----------1.00-------------------------------------------------------------------------------
...................................................................................................................................................CGTGGATGAGAACCTGGACCGCAT.........2412.002.00----------------------1.00------------------------------------------------------------------1.00------------------
..............................AGCGGCTCAAGGCCTTCAAC..................................................................................................................................2012.002.00------------------------------1.00------------------------------------1.00----------------------------------------
.........................................................................................................TCTCCCATAGCCTGTGTCTCCCCT...................................................2412.0023.00----------------------1.001.00------------------------------------------------------------------------------------
..................................................................................................................................ATGTTCGTGCGGCTCTTCGT..............................2012.002.00-------2.00----------------------------------------------------------------------------------------------------
........................................................ACCAGGCAGGGCTGGTGTGCT.......................................................................................................212.000.00------------------------------------------------------------2.00-----------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGACACCGATGGGTCTAAGGCAGGGCCAGTCCTCTCCCATAGCCTGTGTCTCCCCAGTC................................................8211.0021.001.00-----------------------------------------------------------------------------------------------------------
..................................................................................................................................................TCGTGGATGAGAACCTGGA...............1911.001.00--------------------------------------------------------------------------------------------1.00---------------
...................CATGGACCCCGAGCGGCTCAAGGCCTT......................................................................................................................................2711.001.00--------------1.00---------------------------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTTT..........................................................................................................2411.006.00-1.00----------------------------------------------------------------------------------------------------------
........................ACCCCGAGCGGCTCAAGGCCTT......................................................................................................................................2211.001.00--------------1.00---------------------------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGAAC......................................................................................................2811.0031.00------------------------------------------------------------------------------------------------------1.00-----
..................................................GTGAGCACCAGGCAGGGCTGGTTG..........................................................................................................2411.006.00-1.00----------------------------------------------------------------------------------------------------------
................................................................................................................TAGCCTGTGTCTCCCCAGT.................................................191.000.00---------------1.00--------------------------------------------------------------------------------------------
.....................................................AGCACCAGGCAGGGCTGGTGGGAA.......................................................................................................241.000.00---1.00--------------------------------------------------------------------------------------------------------
..................................................................................TGGGTCTAAGGCAGGGCCAGTCCTCTC.......................................................................2711.001.00---1.00--------------------------------------------------------------------------------------------------------
.................................................................................................................................................TTCGTGGATGAGAACCTGGA...............2011.001.00------------------------------------------------1.00-----------------------------------------------------------
......................................................GCACCAGGCAGGGCTGGTGGGACA......................................................................................................2411.001.00------1.00-----------------------------------------------------------------------------------------------------
......................................................................................................................................TCGTGCGGCTCTTCGTGGATGAGAAC....................2611.001.00-----------------------------------1.00------------------------------------------------------------------------
.....................................................................................................................................................TGGATGAGAACCTGGACCGCATGGT......2511.001.00------------------------------------1.00-----------------------------------------------------------------------
...........................................................AGGCAGGGCTGGTGGGACACCGAT.................................................................................................2411.001.00--------------------------------1.00---------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGC................................................................................................................1821.001.00-----0.50--------------------------------------------------------------0.50---------------------------------------
.......................................................................................................................................CGTGCGGCTCTTCGTGGATGAGAACCTGG................2911.001.00--------------------------------------------1.00---------------------------------------------------------------
......................................................................................................................................................GGATGAGAACCTGGACCGCAT.........2111.001.00----------------------1.00-------------------------------------------------------------------------------------
..........................................................CAGGCAGGGCTGGTGGGACA......................................................................................................2011.001.00------------------------------1.00-----------------------------------------------------------------------------
....................................................................................................................................GTTCGTGCGGCTCTTCGT..............................1811.001.00---------------------1.00--------------------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGACACCGC..................................................................................................3211.001.00--------------------------------------------------------------1.00---------------------------------------------
....................................................................................GGTCTAAGGCAGGGCCAGTCCTCTCCCATAGC................................................................3211.001.00--------------------------------------------------------------------1.00---------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTCGG.........................................................................................................2511.006.00-1.00----------------------------------------------------------------------------------------------------------
...............AGGGCATGGACCCCGAGCGGCTCAAGG..........................................................................................................................................2711.001.00-----------------------------------------1.00------------------------------------------------------------------
..................................................................................................................................................TCGTGGATGAGAACCTGGACCGCATGT.......271.000.00-----------------------------------------1.00------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGTT.........................................................................................................2511.0012.00-------------------------1.00----------------------------------------------------------------------------------
.........................................................................................................TCTCCCATAGCCTGTGTCTCCCAT...................................................2411.006.00-------------------------------1.00----------------------------------------------------------------------------
.................................................CGTGAGCACCAGGCAGGGCTGGTGGTT........................................................................................................271.000.00---1.00--------------------------------------------------------------------------------------------------------
............................................................................................................................................................GAACCTGGACCGCATGGT......1811.001.00------------------------------1.00-----------------------------------------------------------------------------
.................................................................................................................................................TTCGTGGATGAGAACCTGGACCGCATT........2711.008.00-----------------------------------------------------------1.00------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTAAA.........................................................................................................2511.006.00--------1.00---------------------------------------------------------------------------------------------------
........................ACCCCGAGCGGCTCAAGGCCTTCAAC..................................................................................................................................2611.001.00--------------1.00---------------------------------------------------------------------------------------------
.....................................................................................................................................................TGGATGAGAACCTGGACCGCATGGTGCCC..2911.001.00--------------1.00---------------------------------------------------------------------------------------------
.....................................................................................................................................................TGGATGAGAACCTGGACCGCATGGTGCC...2811.001.00--------------1.00---------------------------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGGA.......................................................................................................2711.0010.00--------------------------------------------------1.00---------------------------------------------------------
...............................GCGGCTCAAGGCCTTCAAC..................................................................................................................................1911.001.00---------------------------------------1.00--------------------------------------------------------------------
.......................................................................................................................................CGTGCGGCTCTTCGTGGAT..........................1911.001.00-------1.00----------------------------------------------------------------------------------------------------
.........................................................................................AAGGCAGGGCCAGTCCTCTCCCAT...................................................................2411.001.00------------------1.00-----------------------------------------------------------------------------------------
.........................................................CCAGGCAGGGCTGGTGGTT........................................................................................................191.000.00-----------------------------------------------------------------------------------------------1.00------------
.....................TGGACCCCGAGCGGCTCAAGGCCTTCAA...................................................................................................................................2811.001.00--------------------1.00---------------------------------------------------------------------------------------
.........................................................................................................TCTCCCATAGCCTGTGTCTCCCAGA..................................................2511.006.00-----------1.00------------------------------------------------------------------------------------------------
.......................................................................................................................................................GATGAGAACCTGGACCGCATGGTGCC...2611.001.00-----------------------------1.00------------------------------------------------------------------------------
.........................................................................................................TCTCCCATAGCCTGTGTCTCATT....................................................2311.005.00-------------------------------------------------------------------------------------------------1.00----------
..............................................................................................................CATAGCCTGTGTCTCCCCAGT.................................................211.000.00--------------------------------------------------------1.00---------------------------------------------------
........................................................ACCAGGCAGGGCTGGTGGGACACCGAT.................................................................................................2711.001.00---1.00--------------------------------------------------------------------------------------------------------
..ATGAATGACTCAGAGGGCATG.............................................................................................................................................................2111.001.00---------------------------------------------------1.00--------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGAA.........................................................................................................2511.0012.00--------------------------------------1.00---------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGTTTT..........................................................................................................2411.005.00-----1.00------------------------------------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGT........................................................................................................2611.0010.00----1.00-------------------------------------------------------------------------------------------------------
.........................................................................................................TCTCCCATAGCCTGTGTCTCCCCATTAA...............................................2811.004.00-----------1.00------------------------------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGAAT......................................................................................................2811.0031.00------1.00-----------------------------------------------------------------------------------------------------
.....................TGGACCCCGAGCGGCTCAAGGCCTTCA....................................................................................................................................2711.001.00--1.00---------------------------------------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTTTTT........................................................................................................2611.006.00------------------------------------------------------1.00-----------------------------------------------------
...................................................TGAGCACCAGGCAGGGCTGGTGGGACACCG...................................................................................................3011.001.00---1.00--------------------------------------------------------------------------------------------------------
...................................................................................................................................................CGTGGATGAGAACCTGGACCGCATGGTGT....291.000.00----------------------------------------------------1.00-------------------------------------------------------
......ATGACTCAGAGGGCATGGACCCCGAGC...................................................................................................................................................2711.001.00---------------------------------------------------------------------------------------------------1.00--------
..................................................GTGAGCACCAGGCAGGGCTGGTAA..........................................................................................................2411.006.00----1.00-------------------------------------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGACACCG...................................................................................................3111.001.00-----1.00------------------------------------------------------------------------------------------------------
.............................................................GCAGGGCTGGTGGGACACCGATGG...............................................................................................2411.001.00--------------------------------------------1.00---------------------------------------------------------------
....................................................................TGGTGGGACACCGATGGGTCA...........................................................................................211.000.00----------------------------------------------------------------------------------------------------1.00-------
...................................................TGAGCACCAGGCAGGGCTGGTGGGACACCGAT.................................................................................................3211.001.00--------------------------------------------------------------1.00---------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGACACCGT..................................................................................................3211.001.00-----1.00------------------------------------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGACACCGATGGGTCTAAGGCAGGGCCAGTCCTCTCCCATAGCCTGTGTCTCCCCCG..................................................8011.003.001.00-----------------------------------------------------------------------------------------------------------
...................................................................................................................................TGTTCGTGCGGCTCTTCG...............................1811.001.00-----------------------------------------------------------------------1.00------------------------------------
.................................................................................................................................................TTCGTGGATGAGAACCTGGACCGCATGGC......291.000.00----------------------------------------------------------------------------------------------1.00-------------
..................................................GTGAGCACCAGGCAGGGCTGGTGTGA........................................................................................................2611.0012.00-1.00----------------------------------------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGAAAA.....................................................................................................2911.0031.00---1.00--------------------------------------------------------------------------------------------------------
.................................................................GGCTGGTGGGACACCGAC.................................................................................................181.000.00------------------------------------------------------------------1.00-----------------------------------------
.........................................................................................................................................................TGAGAACCTGGACCGCATGGTGT....231.000.00------------------------------------------------------------------------------------------------1.00-----------
....................................................................................................................................GTTCGTGCGGCTCTTCG...............................1711.001.00-------1.00----------------------------------------------------------------------------------------------------
.....................................................................................................................................TTCGTGCGGCTCTTCGTGGATGAGGAC....................271.000.00--------------------------------------------------1.00---------------------------------------------------------
....................................................................TGGTGGGACACCGATGGGT.............................................................................................1911.001.00-----------------------------------------------------------------------------------------------------1.00------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGACACCGATGGGTCTAAGGCAGGGCCAGTCCTCTCCCATAGCCTGTGTCTCCCCAGTTTT..............................................8411.0021.001.00-----------------------------------------------------------------------------------------------------------
.....................................................................................................................................TTCGTGCGGCTCTTCGTGGATG.........................2211.001.00---------------------------------------------------1.00--------------------------------------------------------
............................CGAGCGGCTCAAGGCC........................................................................................................................................1611.001.00---------------------------------------------------------------------1.00--------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGACACCGATGGGTCTAAGGCAGGGCCAGTCCTCTCCCATAGCCTGTGTCTCCCCAGTTT...............................................8311.0021.001.00-----------------------------------------------------------------------------------------------------------
............................................................................................................CCCATAGCCTGTGTCTCCC.....................................................1911.001.00--------------------------------------------------------1.00---------------------------------------------------
.........................................................................................................TCTCCCATAGCCTGTGTCTCCCCAT..................................................2511.004.00------------------1.00-----------------------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGTA.......................................................................................................2711.0010.00------------------------1.00-----------------------------------------------------------------------------------
......................................................................................................................................................GGATGAGAACCTGGACCGC...........1911.001.00----------------------1.00-------------------------------------------------------------------------------------
........................................................ACCAGGCAGGGCTGGTGGGACACCGA..................................................................................................2611.001.00--1.00---------------------------------------------------------------------------------------------------------
..............................................................................CCGATGGGTCTAAGGCAGGGCCAGTC............................................................................2611.001.00--------------------------------1.00---------------------------------------------------------------------------
.................................................................................................................................................TTCGTGGATGAGAACC...................1611.001.00----------------------------1.00-------------------------------------------------------------------------------
...................................................TGAGCACCAGGCAGGGCTGGT............................................................................................................2111.001.00-----------------------------------1.00------------------------------------------------------------------------
...................................................TGAGCACCAGGCAGGGCTGTT............................................................................................................211.000.00-------------------------------------------------------------------------------------1.00----------------------
....................................................GAGCACCAGGCAGGGCGGT.............................................................................................................191.000.00-1.00----------------------------------------------------------------------------------------------------------
...............................................................................................................ATAGCCTGTGTCTCCCCAG..................................................1911.001.00----------------1.00-------------------------------------------------------------------------------------------
.......................................................CACCAGGCAGGGCTGGTGGGACACCGA..................................................................................................2711.001.00---------1.00--------------------------------------------------------------------------------------------------
......................................................................................................................................................GGATGAGAACCTGGACCGCATGGT......2411.001.00-------1.00----------------------------------------------------------------------------------------------------
..................................................................................................................................................TCGTGGATGAGAACCTGGACCG............2211.001.00------------------------------------1.00-----------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGACACCGATGGGTCTAAGGCAGGGCCAGTCCTCTCCCATAGCCTGTGTCTCCCCCGTC................................................8211.003.001.00-----------------------------------------------------------------------------------------------------------
...............................................................................................................................................TCTTCGTGGATGAGAACC...................1811.001.00-----------------------1.00------------------------------------------------------------------------------------
...................................................................................................................................TGTTCGTGCGGCTCTTCGTGGA...........................2211.001.00------------------------------------------------------------------------------1.00-----------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGTT........................................................................................................2611.009.00------1.00-----------------------------------------------------------------------------------------------------
..........................................................................................................CTCCCATAGCCTGTGTCTCCCCAGA.................................................2511.001.00--------------------------------------------------------------------------------------1.00---------------------
.GATGAATGACTCAGAGGGCATGGACCCCG......................................................................................................................................................2911.001.00-----------------------------------------------1.00------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCT...............................................................................................................1911.001.00------------------------------------------------1.00-----------------------------------------------------------
.........................................................................................................TCTCCCATAGCCTGTGTCTCCCCTT..................................................2511.0023.00-----------1.00------------------------------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGGGAG.......................................................................................................2711.0031.00---------------------------1.00--------------------------------------------------------------------------------
........................................................................................................................................................ATGAGAACCTGGACCGCAT.........1911.001.00------------1.00-----------------------------------------------------------------------------------------------
....................................................................TGGTGGGACACCGATGGGTCTAAGG.......................................................................................2511.001.00---------------------1.00--------------------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGCTGGTGTGAC.......................................................................................................2711.0012.00-------------------------1.00----------------------------------------------------------------------------------
.....AATGACTCAGAGGGCA...............................................................................................................................................................1620.500.50----------------------0.50-------------------------------------------------------------------------------------
..................................................................................................................................................TCGTGGATGAGAACC...................1520.500.50------------------------------------0.50-----------------------------------------------------------------------
.........................................................................................................................................................TGAGAACCTGGACCGC...........1620.500.50-----------------------------------0.50------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGG.................................................................................................................1730.330.33-----------------------------------0.33------------------------------------------------------------------------
..................................................GTGAGCACCAGGCAGGGT................................................................................................................1830.330.33-----------------------------------------0.33------------------------------------------------------------------
....................................................................................................................................GTTCGTGCGGCT....................................12100.100.10-----------------------------------------------------------------------------------------------------------0.10

Antisense strand
AGATGAATGACTCAGAGGGCATGGACCCCGAGCGGCTCAAGGCCTTCAACGTGAGCACCAGGCAGGGCTGGTGGGACACCGATGGGTCTAAGGCAGGGCCAGTCCTCTCCCATAGCCTGTGTCTCCCCAGATGTTCGTGCGGCTCTTCGTGGATGAGAACCTGGACCGCATGGTGCCCAT
...........................................................((((((((((.((((((....(((.(((((......))))).)))...))))))))))).)))))........................................................
..................................................51.............................................................................130................................................
SizePerfect hitTotal NormPerfect NormSRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		GSM475281(GSM475281)
total RNA. (testes)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		mjTestesWT1()
Testes Data. (testes)		mjTestesWT4()
Testes Data. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		mjTestesWT3()
Testes Data. (testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR206940(GSM723281)
other. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR037937(GSM510475)
293cand2. (cell line)		mjLiverWT3()
Liver Data. (liver)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR073954(GSM629280)
total RNA. (blood)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR206942(GSM723283)
other. (brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR553586(SRX182792)
source: Testis. (testes)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR037902(GSM510438)
testes_rep3. (testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		GSM510444(GSM510444)
brain_rep5. (brain)		GSM261958(GSM261958)
oocytesmallRNA-24to30. (oocyte)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR028731(GSM400968)
Mili-wt-associated. (testes)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR037922(GSM510460)
e12p5_rep4. (embryo)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR037903(GSM510439)
testes_rep4. (testes)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR206941(GSM723282)
other. (brain)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		GSM509276(GSM509276)
small RNA cloning by length. (testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
.........................................................................................................................TCTCCCCAGATGTTCGTGCG....................................... 2020.500.50----------------------------------------------------------------------------------------------------------0.50-
........................................................................................................................GTCTCCCCAGATGTTCGT.......................................... 1820.500.50-------0.50----------------------------------------------------------------------------------------------------
....................................................................................................................................GTTCGTGCGGCT.................................... 12100.200.20------------------------------------------0.10--------------------------0.10--------------------------------------