ID: uc008kvn.5
GENE: Pacsin3(5)
chr2:91102725-91102974+


(2)
AGO1.ip 		(4)
AGO2.ip 		(1)
AGO3.ip 		(21)
BRAIN 		(2)
CELL-LINE 		(1)
DCR.mut 		(2)
DGCR8.mut 		(10)
EMBRYO 		(3)
ESC 		(2)
FIBROBLAST 		(4)
HEART 		(2)
KIDNEY 		(7)
LIVER 		(2)
LUNG 		(6)
OTHER 		(6)
OTHER.mut 		(2)
PIWI.ip 		(3)
SKIN 		(13)
TESTES 		(3)
TOTAL-RNA

Sense strand
TGCACTTCATCCAGATTCTTCTAGGTGTTTGTTTGTGTACCACTTCCCTTATTAGGCTGCTTCTGTCAGTTCCTGAGGGTAGGAAGTGAGTTCCAGGTCTGACTGCTTCAGGTCTAGCCTATGGCTATGCTCAGAGAATGCTGGTGCGGGCCTGAGTGGAAGGCAGTCTGTCCTCACTGCCTCCCTTCTCTCTCACCCAGATGAAAACCCAGTATGAGCAGACCCTGGCCGAGCTAAATCGCTACACCCC
..............................................................................................................................................((((.(((...(((.((.(((((((........))))))))).))).))).)))).....................................................
...........................................................................................................................................140.........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		mjLiverWT1()
Liver Data. (liver)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		mjTestesWT4()
Testes Data. (testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		mjTestesWT3()
Testes Data. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		mjTestesWT2()
Testes Data. (testes)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		mjLiverKO2()
Liver Data. (Zcchc11 liver)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR206940(GSM723281)
other. (brain)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR037937(GSM510475)
293cand2. (cell line)		SRR206939(GSM723280)
other. (brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		GSM475281(GSM475281)
total RNA. (testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042476(GSM539868)
mouse heart tissue [09-002]. (heart)		SRR553586(SRX182792)
source: Testis. (testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		mjLiverWT2()
Liver Data. (liver)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (gland)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)
................................................................................................................................................TGCGGGCCTGAGTGGAAGGCAGT...................................................................................23129.0029.00-1.00----2.001.00-2.002.00--2.00-1.00---1.001.00-1.00---2.00--1.00--1.00---1.001.00----1.001.00---1.00--------1.001.00----1.00-1.00-1.00-----1.00-----
................................................................................................................................................TGCGGGCCTGAGTGGAAGGCAG....................................................................................22118.0018.004.00---1.001.001.001.001.00--3.002.00----------1.00-----------1.00-----1.00----------------1.00-------------------
...................................................................................................................................................................................CCTCCCTTCTCTCTCACCCAGT.................................................2210.000.00--5.00---1.00-2.00-----1.00--------------------------------------------1.00------------------
................................................................................................................................................TGCGGGCCTGAGTGGAAGGCAGA...................................................................................2319.0018.00----------------2.00-2.001.00-2.00------2.00-------------------------------------------------
............................................................................................................................................CTGGTGCGGGCCTGAGTGGAAGGCA.....................................................................................2515.005.00---5.00--------------------------------------------------------------------------
.................................................................................................................................................................................TGCCTCCCTTCTCTCTCACCCAGT.................................................244.000.00--------------1.00----------------1.00---------------------------------1.00----------1.00-
..................................................................................................................................................CGGGCCTGAGTGGAAGGCAGT...................................................................................2114.004.00----2.00------------------------1.00--------1.00---------------------------------------
.............................................................................................................................................TGGTGCGGGCCTGAGTGGAAGGC......................................................................................2313.003.003.00-----------------------------------------------------------------------------
................................................................................................................................................TGCGGGCCTGAGTGGAAGGCAT....................................................................................2213.002.00-----2.00--------------------------------------------1.00---------------------------
.................................................................................................................................................GCGGGCCTGAGTGGAAGGCAGT...................................................................................2213.003.00-1.00-------------------------1.00---------------------------------------1.00----------
................................................................................................................................................TGCGGGCCTGAGTGGAAGGCAGTT..................................................................................2412.0029.00--------------------1.00-----------------------------------------------------1.00---
................................................................................................................................................TGCGGGCCTGAGTGGAAGGCA.....................................................................................2112.002.00--------1.00-------------------------------------------------------------1.00-------
..................................................................................................................................................CGGGCCTGAGTGGAAGGCAGTAA.................................................................................2312.004.00-------2.00----------------------------------------------------------------------
...................................................................................................................................................................................CCTCCCTTCTCTCTCACCCAGA.................................................2211.001.00---------------------------------------------------1.00--------------------------
...............................................................................................................................................GTGCGGGCCTGAGTGGAAGGCA.....................................................................................2211.001.00-----------------------------------------------------------------------------1.00
................................................................................................................................................TGCGGGCCTGAGTGGAAGGC......................................................................................2011.001.00---------1.00--------------------------------------------------------------------
....................................................................................................................................................GGCCTGAGTGGAAGGGA.....................................................................................171.000.00-------------------------------------------------------------1.00----------------
.............................................................................................................................................TGGTGCGGGCCTGAGTGGAAGGCA.....................................................................................2411.001.00---------------1.00--------------------------------------------------------------
................................................................................................................................................TGCGGGCCTGAGTGGAAG........................................................................................1811.001.00---------------------------------------1.00--------------------------------------
.............................................................................................................................................TGGTGCGGGCCTGAGTGGAAGGCAGT...................................................................................2611.001.00-------------------------------------------------1.00----------------------------
................................................................................................................................................TGCGGGCCTGAGTGGAAGGCAGTAT.................................................................................2511.0029.00---------------------------------------------------------------------------1.00--
................................................................................................................................................TGCGGGCCTGAGTGGAAGG.......................................................................................1911.001.00----1.00-------------------------------------------------------------------------
.................................................................................................................................................GCGGGCCTGAGTGGAAGGCAG....................................................................................2111.001.00-----1.00------------------------------------------------------------------------
.............................................................................................................................................TGGTGCGGGCCTGAGTGGAAGGCAG....................................................................................2511.001.00---------------------------1.00--------------------------------------------------
....................................................................................................................................................................................................................TATGAGCAGACCCTGGCCGAGCTAAATCGC........3011.001.00-------------------------------------------------------------------------1.00----
..........................................................................................................................................................AGTGGAAGGCAGTCTGTTT.............................................................................191.000.00------------------------------1.00-----------------------------------------------
.............................................................................................................................................TGGTGCGGGCCTGAGTGGAAGG.......................................................................................2211.001.00----------1.00-------------------------------------------------------------------
....................................................................................................................................................................................CTCCCTTCTCTCTCACCCAGA.................................................2111.001.00---------------------------------1.00--------------------------------------------
........................................................................................................................................................................................................................AGCAGACCCTGGCCGAGCTAAATCGC........2611.001.00----------------------------------------------1.00-------------------------------
...............................................................................................................................................GTGCGGGCCTGAGTGGAAGGCAGT...................................................................................2411.001.00------------------------------------------------1.00-----------------------------
.................................................................................................................................................GCGGGCCTGAGTGGAAGG.......................................................................................1811.001.00-----------------------1.00------------------------------------------------------
................................................................................................................................................TGCGGGCCTGAGTGGAAGGCAA....................................................................................2211.002.00------------------------------------------------------1.00-----------------------
.....................................................................TTCCTGAGGGTAGGAGGA...................................................................................................................................................................181.000.00-------------------------------------------------------1.00----------------------
..............................................................................................................................................GGTGCGGGCCTGAGTGGAAG........................................................................................2011.001.00---------------------------------------------1.00--------------------------------
.............................................................................................................................................TGGTGCGGGCCTGAGTGGAA.........................................................................................2011.001.00-1.00----------------------------------------------------------------------------
...........................................................................................................................................GCTGGTGCGGGCCTGTG..............................................................................................171.000.00-----------------------------------------------------------------------1.00------
..................................................................................................................................................................................GCCTCCCTTCTCTCTCACCCAGT.................................................231.000.00--------------------------------------------------------------------1.00---------
................................................................................................................................................TGCGGGCCTGAGTGGAAGGCAGG...................................................................................2311.0018.00------------1.00-----------------------------------------------------------------
.................................................................................................................................................GCGGGCCTGAGTGGAAGGA......................................................................................1911.001.00----------------------------------------------------1.00-------------------------
.................................................................................................................................................................................TGCCTCCCTTCTCTCTCACCCAGA.................................................2411.001.00--------------------------------------------1.00---------------------------------
....................................................................................................................................AGAGAATGCTGGTGCG......................................................................................................1620.500.50------------------------------0.50-----------------------------------------------

Antisense strand
TGCACTTCATCCAGATTCTTCTAGGTGTTTGTTTGTGTACCACTTCCCTTATTAGGCTGCTTCTGTCAGTTCCTGAGGGTAGGAAGTGAGTTCCAGGTCTGACTGCTTCAGGTCTAGCCTATGGCTATGCTCAGAGAATGCTGGTGCGGGCCTGAGTGGAAGGCAGTCTGTCCTCACTGCCTCCCTTCTCTCTCACCCAGATGAAAACCCAGTATGAGCAGACCCTGGCCGAGCTAAATCGCTACACCCC
..............................................................................................................................................((((.(((...(((.((.(((((((........))))))))).))).))).)))).....................................................
...........................................................................................................................................140.........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		mjLiverWT1()
Liver Data. (liver)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		mjTestesWT4()
Testes Data. (testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		mjTestesWT3()
Testes Data. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		mjTestesWT2()
Testes Data. (testes)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		mjLiverKO2()
Liver Data. (Zcchc11 liver)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR206940(GSM723281)
other. (brain)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR037937(GSM510475)
293cand2. (cell line)		SRR206939(GSM723280)
other. (brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		GSM475281(GSM475281)
total RNA. (testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042476(GSM539868)
mouse heart tissue [09-002]. (heart)		SRR553586(SRX182792)
source: Testis. (testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		mjLiverWT2()
Liver Data. (liver)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (gland)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)
...............................................................................................................GTCTAGCCTATGGCTATGCTCAGAGAA................................................................................................................ 2712.002.00------------------------2.00-----------------------------------------------------
.....................................................AGGCTGCTTCTGTCAGTTCCTGAGGGTA......................................................................................................................................................................... 2812.002.00-----------------2.00------------------------------------------------------------
........................................................................................................................................................................................CTTCTCTCTCACCCACAGA............................................... 191.000.00-----------------------------------------------------1.00------------------------
......................................................................................................................................................................................CCCTTCTCTCTCACCCCATT................................................ 201.000.00----------------------------------------1.00-------------------------------------
.GCACTTCATCCAGATTCTTCTA................................................................................................................................................................................................................................... 2211.001.00---------------------------------------------------------------1.00--------------
.....................................................................................GTGAGTTCCAGGTCTGGTC.................................................................................................................................................. 191.000.00-1.00----------------------------------------------------------------------------
.................................................................................................................................................................................TGCCTCCCTTCTCTCTCACC..................................................... 2011.001.00-1.00----------------------------------------------------------------------------
............................................................................................CCAGGTCTGACTGCTTCAGGTCTAGCCTA................................................................................................................................. 2911.001.00------------------------------------------------------------1.00-----------------
......................................................GGCTGCTTCTGTCAGTTCCTGAGGGTA......................................................................................................................................................................... 2711.001.00-------------------------1.00----------------------------------------------------
.GCACTTCATCCAGATTCTTCT.................................................................................................................................................................................................................................... 2111.001.00---------------------------------------------------------------------1.00--------
......................................................................................................................................................................................CCCTTCTCTCTCACCCTGA................................................. 191.000.00----------------------------------1.00-------------------------------------------
............................TTGTTTGTGTACCACTTCCCTTATTA.................................................................................................................................................................................................... 2611.001.00-------------------------1.00----------------------------------------------------
..................................................................................GAAGTGAGTTCCAGGTCTT..................................................................................................................................................... 191.000.00----------------------1.00-------------------------------------------------------
...............................................................................................................................................................AAGGCAGTCTGTCCTC........................................................................... 1690.110.11-------------0.11----------------------------------------------------------------