ID: uc008kuo.13
GENE: Madd(5)
chr2:91002740-91002933-


(1)
AGO1.ip 		(12)
AGO2.ip 		(4)
B-CELL 		(28)
BRAIN 		(1)
CELL-LINE 		(2)
DGCR8.mut 		(3)
EMBRYO 		(3)
ESC 		(1)
KIDNEY 		(2)
LIVER 		(1)
LUNG 		(4)
LYMPH 		(10)
OTHER 		(1)
OTHER.mut 		(1)
PANCREAS 		(7)
SPLEEN 		(3)
TESTES 		(1)
THYMUS

Sense strand
GCGCAGTGCAGTCAGAGGATGACGCCCGGCAGGATGTCATCCAAGACGTGGTAAGCGTCTGGGCAAGGGATTGGGATCAGCTGGGCAGAAGAGTGTGGATGTTAGAGAGAGGTTGCTAGCTCTAGGTCCTGGCTCTTGTTGCAGGAGATCAGCCGGAAGGTGTACAAGGGGATGCTAGACCTCCTCAAGTGCAC
....................................................................................((((((((((..((((.((((((..((....))..))))))))))..)))))).))))....................................................
.................................................................................82............................................................144................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR206942(GSM723283)
other. (brain)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR206940(GSM723281)
other. (brain)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		mjLiverWT1()
Liver Data. (liver)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR037905(GSM510441)
brain_rep2. (brain)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR059774(GSM562836)
MEF_control. (MEF)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR525239(SRA056111/SRX170315)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR206939(GSM723280)
other. (brain)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)
..........................................................................................................................TAGGTCCTGGCTCTTGTTGCAGT.................................................23165.0038.0022.006.00-6.005.00---1.00---2.003.00-1.001.002.00-----2.001.00--------1.00-1.00--1.001.00----1.00-1.00---1.001.00----1.00-----1.001.00---1.001.00
..........................................................................................................................TAGGTCCTGGCTCTTGTTGCAG..................................................22138.0038.002.008.00-3.004.00---5.00--4.002.00-1.001.00--------1.002.002.00----2.00---------1.00---------------------------
....AGTGCAGTCAGAGGAGCCA...........................................................................................................................................................................1937.000.00--12.00--10.00-7.00-------------------1.00-2.00------------1.00--1.00--1.00--------1.00-------1.00---
......................................................................................AGAAGAGTGTGGATGTTAGA........................................................................................20110.0010.00---------4.006.00----------------------------------------------------------
..........................................................................................................................TAGGTCCTGGCTCTTGTTGC....................................................2015.005.00-1.00-1.00-----------1.00------------2.00----------------------------------------
..........................................................................................................................TAGGTCCTGGCTCTTGTTGCAGA.................................................2315.0038.00-------------1.00--1.00----1.00--------------------------------1.001.00-------------
..................................................GTAAGCGTCTGGGCAAGGGATTGGGATCAGCTGGGCAGAAGAGTGTGGATGTTAGAGAGAGGTTGCTAGCTCTAGGTCCTGGCTCTTGTTGCAG..................................................9414.004.00------4.00--------------------------------------------------------------
...................................................................................GGCAGAAGAGTGTGGATGTTA..........................................................................................2113.003.00--------------2.00----------------------------1.00-------------------------
...................................................................................GGCAGAAGAGTGTGGATGTTAG.........................................................................................2213.003.00-1.00--------------1.00-------------------------------------------1.00--------
.....GTGCAGTCAGAGGATCCA...........................................................................................................................................................................182.000.00------------------------------2.00--------------------------------------
........................................................................................................................................................CCGGAAGGTGTACAAGGGGATGT...................232.000.00------------------2.00--------------------------------------------------
..................................................GTAAGCGTCTGGGCAAGGGATTGGGATCAGCTGGGCAGAAGAGTGTGGATGTTAGAGAGAGGTTGCTAGCTCTAGGTCCTGGCTCTTGTTGCA...................................................9312.002.00------2.00--------------------------------------------------------------
...............................................................................................................................................GGAGATCAGCCGGAAGGTGT...............................2012.002.00--------------------2.00------------------------------------------------
..........................................................................................................................TAGGTCCTGGCTCTTGTTGCA...................................................2111.001.00--------1.00------------------------------------------------------------
..........................................................................................................................TAGGTCCTGGCTCTTGTTGCAGTAGA..............................................2611.0038.001.00--------------------------------------------------------------------
..........................................................................................................................TAGGTCCTGGCTCTTGTTGCAGG.................................................2311.001.00---1.00-----------------------------------------------------------------
......................................................................................................................................CTTGTTGCAGGAGATGCC..........................................181.000.00--1.00------------------------------------------------------------------
.....................................................................................CAGAAGAGTGTGGATGTTAGAGAGAGGTT................................................................................2911.001.00----------------------------------1.00----------------------------------
.............................................................................................................................GTCCTGGCTCTTGTTGCAG..................................................1911.001.00-----------1.00---------------------------------------------------------
..................................................GTAAGCGTCTGGGCAAGGGATTGGGATCAGCTGGGCAGAAGAGTGTGGATGTTAGAGAGAGGTTGCTAGCTCTAGGTCCTGGCTCTT.........................................................8711.001.00------1.00--------------------------------------------------------------
..........................................................................................................................TAGGTCCTGGCTCTTGTTGCAGTTT...............................................2511.0038.00-----------------------------------------------------1.00---------------
...............................................................................................TGGATGTTAGAGAGAGTCT................................................................................191.000.00-----------------1.00---------------------------------------------------
......................................................................................................TAGAGAGAGGTTGCTAGCTCTAGGTCCTGG..............................................................3011.001.00-----------1.00---------------------------------------------------------
..........................................................................................................................TAGGTCCTGGCTCTTGTTGCAT..................................................2211.001.00---------------------1.00-----------------------------------------------
..........................................................................................................................TAGGTCCTGGCTCTTGTTGT....................................................201.000.00------------------------------------------------------------------1.00--
..........................................................................................................................TAGGTCCTGGCTCTTGTTGCAGTT................................................2411.0038.00-------------------------------------------------1.00-------------------
...........................................................................................................................AGGTCCTGGCTCTTGTTGCAGT.................................................221.000.00----1.00----------------------------------------------------------------
.....................................................................................CAGAAGAGTGTGGATGTTAG.........................................................................................2011.001.00----------------------1.00----------------------------------------------
.......................................................................................................................................TTGTTGCAGGAGATCAGTCGG......................................211.000.00----------------------------------------------------------1.00----------
.....................................................................................CAGAAGAGTGTGGATGTTAGA........................................................................................2111.001.001.00--------------------------------------------------------------------
...........................................................................................................................................................GAAGGTGTACAAGGGGATG....................1911.001.00---------------------------1.00-----------------------------------------
...................................................................................GGCAGAAGAGTGTGGATGTTAGA........................................................................................2311.001.00--------------------------------1.00------------------------------------
......................................................................................AGAAGAGTGTGGATGTTAGT........................................................................................201.000.00---------1.00-----------------------------------------------------------
......................................................................................AGAAGAGTGTGGATGTTGTA........................................................................................201.000.00-------------------------------------------------------------1.00-------
..........................................................................................................................TAGGTCCTGGCTCTTGTTGCAAATA...............................................2511.001.00--------1.00------------------------------------------------------------
....................................................................................GCAGAAGAGTGTGGATGTTAG.........................................................................................2111.001.00----------------------1.00----------------------------------------------
..........................................................................................................................TAGGTCCTGGCTCTTGTTGCAA..................................................2211.001.00-----------------------------------------------1.00---------------------
....AGTGCAGTCAGAGGAGACA...........................................................................................................................................................................191.000.00-------1.00-------------------------------------------------------------
..................................................GTAAGCGTCTGGGCAAGGGATTGGGATCAGCTGGGCAGAAGAGTGTGGATGTTAGAGAGAGGTTGCTAGCTCTAGGTCCTGGCTCTTGTTG.....................................................9111.001.00------1.00--------------------------------------------------------------
......................................................................................AGAAGAGTGTGGATGTTAAG........................................................................................201.000.00---------1.00-----------------------------------------------------------
....................................................AAGCGTCTGGGCAAGGGATTGGGATCAGCTGGGCAGAAGAGTGTGGATGTTAGAGAGAGGTTGCTAGCTCTAGGTCCTGGCTCTTGTTGCAG..................................................9211.001.00------1.00--------------------------------------------------------------
.........................................................................................................................CTAGGTCCTGGCTCTTGTTGA....................................................211.000.00----------------------------------------------------------------1.00----
...............................................................................................................................................GGAGATCAGCCGGAAGGT.................................1811.001.00----------------------------------------1.00----------------------------
..........................................................................................................................TAGGTCCTGGCTCTTGTTGCGGT.................................................2311.005.001.00--------------------------------------------------------------------
.....................................................................................CAGAAGAGTGTGGATGTTTGAG.......................................................................................221.000.00-------------------------------------1.00-------------------------------
......................................................................................AGAAGAGTGTGGATGTTTGT........................................................................................201.000.00---------1.00-----------------------------------------------------------
...............................................GTGGTAAGCGTCTGGAGCT................................................................................................................................191.000.00----------------------------------------------------1.00----------------
...CAGTGCAGTCAGAGGAGCCA...........................................................................................................................................................................201.000.00-----------------------------------------------------------1.00---------
....................................................................................................................TAGCTCTAGGTCCTGGCTCTTGT.......................................................2311.001.00------------------------------------1.00--------------------------------
......................................................................................AGAAGAGTGTGGATGTTTGA........................................................................................201.000.00----------1.00----------------------------------------------------------

Antisense strand
GCGCAGTGCAGTCAGAGGATGACGCCCGGCAGGATGTCATCCAAGACGTGGTAAGCGTCTGGGCAAGGGATTGGGATCAGCTGGGCAGAAGAGTGTGGATGTTAGAGAGAGGTTGCTAGCTCTAGGTCCTGGCTCTTGTTGCAGGAGATCAGCCGGAAGGTGTACAAGGGGATGCTAGACCTCCTCAAGTGCAC
....................................................................................((((((((((..((((.((((((..((....))..))))))))))..)))))).))))....................................................
.................................................................................82............................................................144................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR206942(GSM723283)
other. (brain)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR206940(GSM723281)
other. (brain)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		mjLiverWT1()
Liver Data. (liver)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR037905(GSM510441)
brain_rep2. (brain)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR059774(GSM562836)
MEF_control. (MEF)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR525239(SRA056111/SRX170315)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR206939(GSM723280)
other. (brain)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)
..........................................................................................................................................TTGCAGGAGATCAGCAA....................................... 172.000.00-------------------2.00-------------------------------------------------