ID: uc008kfn.299
GENE: Ttn(299)
chr2:76793096-76793345-


(2)
AGO2.ip
(9)
BRAIN
(7)
EMBRYO
(3)
ESC
(3)
HEART
(1)
KIDNEY
(2)
LIVER
(1)
LUNG
(8)
OTHER
(5)
OTHER.mut
(12)
TESTES
(10)
TOTAL-RNA
(1)
UTERUS

Sense strand
ATGAAGCACAAATTCTTGAAAGAGCTGAGTTATGTTTCTGAGCAATTAACATTGTTATATAACACAAATATTCTACACCTCCCATACCTTTGTCTGTCTGAGTAAGTAAAGGAGCTATCCCAGGAGGCTGTCCCTGGGAGGAGGTGTCCAAGTGTAACTTTGACATTATCAACTACTCACTTGGAAAACCTTGTCTCCAGGTGGGCGTTGGGAAGAAGGCAGAAGCCGTGGCAACAGTTGTAGCTGCTGT
.....................................................................................................................................((((((.(((((.((((((((.....((((.....)))).....))))))))..))))).)).))))..................................................
................................................................................................................................129....................................................................200................................................
SizePerfect hitTotal NormPerfect NormmjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR095853(SRX039174)
"sequencing of miRNA from wild type and disea. (heart)
mjTestesWT1()
Testes Data. (testes)
SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR346415(SRX098256)
source: Testis. (Testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR037914(GSM510451)
newborn_rep7. (total RNA)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR037910(GSM510447)
newborn_rep3. (total RNA)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
GSM510452(GSM510452)
newborn_rep8. (total RNA)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)
GSM510454(GSM510454)
newborn_rep10. (total RNA)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
SRR037909(GSM510446)
newborn_rep2. (total RNA)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
GSM510450(GSM510450)
newborn_rep6. (total RNA)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
mjTestesWT2()
Testes Data. (testes)
mjTestesWT3()
Testes Data. (testes)
GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
SRR073954(GSM629280)
total RNA. (blood)
SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)
SRR553584(SRX182790)
source: Heart. (Heart)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR073955(GSM629281)
total RNA. (blood)
SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)
GSM510455(GSM510455)
newborn_rep11. (total RNA)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
SRR206941(GSM723282)
other. (brain)
SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR206940(GSM723281)
other. (brain)
SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
mjTestesWT4()
Testes Data. (testes)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR402766(SRX117949)
source: ES PGK female cells. (ESC)
.....................................................................................................................................CTGGGAGGAGGTGTCCAAGTGT...............................................................................................22120.0020.00-17.00--1.00------1.00----1.00----------------------------------------
......................................................................................................................................TGGGAGGAGGTGTCCAAGTG................................................................................................20113.0013.00----8.00-----1.001.00-----2.00-----1.00---------------------------------
...................................................................................................................................CCCTGGGAGGAGGTGTCCAAGTGT...............................................................................................24110.0010.00-10.00-------------------------------------------------------
...................................................................................................................................CCCTGGGAGGAGGTGTCCAAGTG................................................................................................2317.007.00-1.00--------1.00---1.00--1.00--1.00--1.00------------1.00--------------------
....................................................................................................................................CCTGGGAGGAGGTGTCCAAGTGA...............................................................................................2316.003.00----1.00----2.00-----2.001.00----------------------------------------
......................................................................................................................................TGGGAGGAGGTGTCCAAGTGTAACTTTGACATTATCAACTACTCACTTGGAAAACCTTGTCTCCAGA.................................................674.000.00-------------4.00-------------------------------------------
......................................................................................................................................TGGGAGGAGGTGTCCAAGTGT...............................................................................................2114.004.00----2.00------1.00---------1.00-----------------------------------
....................................................................................................................................CCTGGGAGGAGGTGTCCAAGTGT...............................................................................................2314.004.00-1.00--2.00-----------------1.00----------------------------------
........................................................................................TTTGTCTGTCTGAGTAAGTAAAGGAGC.......................................................................................................................................2714.004.00--4.00------------------------------------------------------
................................................................................................................................................................................TCACTTGGAAAACCTTGTCTCCAGA.................................................254.000.00-----------1.00--------1.00-----2.00------------------------------
...................................................................................................................................CCCTGGGAGGAGGTGTCCAAGT.................................................................................................2213.003.00-1.00--2.00----------------------------------------------------
......................................................................................................................................TGGGAGGAGGTGTCCAAGTGA...............................................................................................2113.0013.00---------------1.00------------1.00------------1.00---------------
....................................................................................................................................CCTGGGAGGAGGTGTCCAAGTG................................................................................................2213.003.00----1.00------1.00---------1.00-----------------------------------
..................................................................................................................................TCCCTGGGAGGAGGTGTCCAAGA.................................................................................................2313.001.00----1.00-----1.00----1.00-----------------------------------------
........................................................................................................................................GGAGGAGGTGTCCAAGTGA...............................................................................................193.000.00----2.00------1.00---------------------------------------------
....................................................................................................................................CCTGGGAGGAGGTGTCCAAGT.................................................................................................2113.003.00-1.00-------2.00-----------------------------------------------
..................................................................................................................................TCCCTGGGAGGAGGTGTCCAAGT.................................................................................................2312.002.00----1.00-----1.00----------------------------------------------
...................................................................................................................................................................................CTTGGAAAACCTTGTCTCCAGAAA...............................................242.000.00-----------1.00----------1.00----------------------------------
.....................................................................................................................................CTGGGAGGAGGTGTCCAAGTGA...............................................................................................222.000.00-1.00--------1.00----------------------------------------------
......................................................................................................................................TGGGAGGAGGTGTCCAAGTGTAACTTTGACATTATCAACTACTCACTTGGAAAACCTTGTCTCCAGT.................................................672.000.00-------------2.00-------------------------------------------
................................................................................................................................................................................TCACTTGGAAAACCTTGTCTCCAGT.................................................251.000.00----------------------------------1.00----------------------
....................................................................................................................................................................................................................AAGAAGGCAGAAGCCCGA....................181.000.00--------1.00------------------------------------------------
......................................................................................................................................TGGGAGGAGGTGTCCAAGTGAA..............................................................................................2211.0013.00----------------------------1.00----------------------------
........................................................................................................................................................................................................GTGGGCGTTGGGAAGAAGGCAGAAGCCGT.....................2911.001.00----------------------------------------------1.00----------
...................................................................................................................................................................................CTTGGAAAACCTTGTCTCCAGA.................................................221.000.00----------------1.00----------------------------------------
..................................................................................................................................TCCCTGGGAGGAGGTGTCCAAG..................................................................................................2211.001.00-----------------1.00---------------------------------------
.........................................................................................................................................................................................................TGGGCGTTGGGAAGAAGGCAGAAGCC.......................2611.001.00-------------------------------------1.00-------------------
......................................................................................................................................TGGGAGGAGGTGTCCAAGTGTAAT............................................................................................241.000.00-----------------------------------------------1.00---------
....................................................................................................................................................................................................................AAGAAGGCAGAAGCCGA.....................171.000.00------------------------------------------1.00--------------
.....................................................................................................................................CTGGGAGGAGGTGTCCAAGGG................................................................................................211.000.00---------1.00-----------------------------------------------
...................................................................................................................................................................................CTTGGAAAACCTTGTCTCCAGTTT...............................................241.000.00----------1.00----------------------------------------------
..............................................................................................................................................................................................................GTTGGGAAGAAGGCAGAAGCCGTGGCA.................2711.001.00-------------------------------------------1.00-------------
....................................................................................................................................................................................TTGGAAAACCTTGTCTCCAGA.................................................211.000.00--------------------------------------------1.00------------
.................................................................................................................................................................................CACTTGGAAAACCTTGTCTCC....................................................2111.001.00---------------------1.00-----------------------------------
......................................................................................................................................TGGGAGGAGGTGTCCAAGT.................................................................................................1911.001.00---------1.00-----------------------------------------------
...................................................................................................................................................................................CTTGGAAAACCTTGTCTCCAGTT................................................231.000.00---------------1.00-----------------------------------------
.............................................................................................................................................................................................................CGTTGGGAAGAAGGCAGAAGCCGTGGCAACAG.............3211.001.00------------------1.00--------------------------------------
....................................................................................................................................CCTGGGAGGAGGTGTCCAAGTGTAA.............................................................................................2511.001.00----------------1.00----------------------------------------
....................................................................................................................................CCTGGGAGGAGGTGTCCAAGAG................................................................................................221.000.00--------------------1.00------------------------------------
................................................................................................................................................................................TCACTTGGAAAACCTTGTCTCCCGA.................................................251.000.00-----------------------1.00---------------------------------
...................................................................................................................................CCCTGGGAGGAGGTGTCCAAGGG................................................................................................231.000.00----------------------1.00----------------------------------
.....................................................................................................................................CTGGGAGGAGGTGTCCAAGTGTA..............................................................................................2311.001.00-1.00-------------------------------------------------------
....................................................................................................................................CCTGGGAGGAGGTGTCCAAGTGC...............................................................................................2311.003.00----------1.00----------------------------------------------
.........................................................................................................................................................................................................TGGGCGTTGGGAAGA..................................1540.500.50---------------------------------------------------0.50-----

Antisense strand
ATGAAGCACAAATTCTTGAAAGAGCTGAGTTATGTTTCTGAGCAATTAACATTGTTATATAACACAAATATTCTACACCTCCCATACCTTTGTCTGTCTGAGTAAGTAAAGGAGCTATCCCAGGAGGCTGTCCCTGGGAGGAGGTGTCCAAGTGTAACTTTGACATTATCAACTACTCACTTGGAAAACCTTGTCTCCAGGTGGGCGTTGGGAAGAAGGCAGAAGCCGTGGCAACAGTTGTAGCTGCTGT
.....................................................................................................................................((((((.(((((.((((((((.....((((.....)))).....))))))))..))))).)).))))..................................................
................................................................................................................................129....................................................................200................................................
SizePerfect hitTotal NormPerfect NormmjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR095853(SRX039174)
"sequencing of miRNA from wild type and disea. (heart)
mjTestesWT1()
Testes Data. (testes)
SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR346415(SRX098256)
source: Testis. (Testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR037914(GSM510451)
newborn_rep7. (total RNA)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR037910(GSM510447)
newborn_rep3. (total RNA)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
GSM510452(GSM510452)
newborn_rep8. (total RNA)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)
GSM510454(GSM510454)
newborn_rep10. (total RNA)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
SRR037909(GSM510446)
newborn_rep2. (total RNA)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
GSM510450(GSM510450)
newborn_rep6. (total RNA)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
mjTestesWT2()
Testes Data. (testes)
mjTestesWT3()
Testes Data. (testes)
GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
SRR073954(GSM629280)
total RNA. (blood)
SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)
SRR553584(SRX182790)
source: Heart. (Heart)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR073955(GSM629281)
total RNA. (blood)
SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)
GSM510455(GSM510455)
newborn_rep11. (total RNA)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
SRR206941(GSM723282)
other. (brain)
SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR206940(GSM723281)
other. (brain)
SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
mjTestesWT4()
Testes Data. (testes)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR402766(SRX117949)
source: ES PGK female cells. (ESC)
....................................................................TATTCTACACCTCCCATAG................................................................................................................................................................... 1945.000.0013.00-10.002.00-3.005.001.001.00---2.00-----1.002.00---------1.002.001.00-1.00-----------------------
....................................................................TATTCTACACCTCCCATAGTG................................................................................................................................................................. 2135.000.0015.00-11.004.00-2.00-1.00----1.00----------------------1.00---------------------
....................................................................TATTCTACACCTCCCATAGT.................................................................................................................................................................. 2017.000.006.00-2.003.00-2.001.001.001.00--------------------1.00---------------------------
....................................................................TATTCTACACCTCCCATA.................................................................................................................................................................... 1816.000.008.00--1.00-3.00-1.00----1.00-----1.001.00-------------------------------------
.....................................................................ATTCTACACCTCCCAT..................................................................................................................................................................... 16113.0013.00---3.00-2.00-4.002.00------------------2.00-----------------------------
....................................................................TATTCTACACCTCCCAT..................................................................................................................................................................... 17112.0012.001.00--2.00-1.003.00-2.00---------1.00-----1.00------------------------1.00-------
....................................................................TATTCTACACCTCCCAAG.................................................................................................................................................................... 1810.000.001.50-----1.00-----1.00-4.00-0.50--------0.50------------0.50-----------0.50-0.50----
....................................................................TATTCTACACCTCCCAG..................................................................................................................................................................... 174.670.001.67-1.001.00----0.67---0.33--------------------------------------------
....................................................................TATTCTACACCTCCCAGTG................................................................................................................................................................... 194.330.002.00-0.67------0.67---------------0.33------0.33---------------------0.33--
....................................................................TATTCTACACCTCCCAAGTG.................................................................................................................................................................. 203.500.001.00------------------------1.50------0.50-----0.50------------------
....................................................................TATTCTACACCTCCCA...................................................................................................................................................................... 1623.503.50---2.00---0.50----1.00--------------------------------------------
....................................................................TATTCTACACCTCCCAGT.................................................................................................................................................................... 182.330.000.33-0.33---0.67---------0.33------------------------------------0.33-0.33-
..................................................................AATATTCTACACCTCGT....................................................................................................................................................................... 172.000.00---1.00---1.00-------------------------------------------------
....................................................................TATTCTACACCTCCCAAGT................................................................................................................................................................... 192.000.001.00--------0.50----------------------0.50------------------------
..................................................................AATATTCTACACCTCG........................................................................................................................................................................ 161.000.00---1.00-----------------------------------------------------
....................................................................TATTCTACACCTCCCAA..................................................................................................................................................................... 171.000.000.50-----------------------0.50--------------------------------
..................................................................AATATTCTACACCTCGG....................................................................................................................................................................... 171.000.00---1.00-----------------------------------------------------
................................................................CAAATATTCTACACCTCGGG...................................................................................................................................................................... 201.000.00----------------------------------------1.00----------------
....................................................................TATTCTACACCTCCCATGG................................................................................................................................................................... 191.000.00------------------------------------------------1.00--------
.......................................................................................................................................................................................................GGTGGGCGTTGGGAACAC................................. 181.000.00---------------------------------------1.00-----------------
.....................................................................ATTCTACACCTCCCATA.................................................................................................................................................................... 1711.001.00------------------------1.00--------------------------------
..................................................................AATATTCTACACCTCCAAA..................................................................................................................................................................... 191.000.00------1.00--------------------------------------------------
......................................................................................................................................................................................................................GAAGGCAGAAGCCGTGGCAACAGTTG.......... 2611.001.00---------------------------------------------1.00-----------
...................................................................ATATTCTACACCTCCCATG.................................................................................................................................................................... 191.000.00--------1.00------------------------------------------------
...................................................................ATATTCTACACCTCCCGAGG................................................................................................................................................................... 201.000.00-------------------------------1.00-------------------------
....................................................................TATTCTACACCTCCCA...................................................................................................................................................................... 160.670.00--0.33-----------------------------0.33------------------------
....................................................................TATTCTACACCTCCC....................................................................................................................................................................... 1530.670.67---0.33---------------0.33-------------------------------------
.....................................................................ATTCTACACCTCCCA...................................................................................................................................................................... 1580.380.38---0.25----------------------------------------------------0.12
....................................................................TATTCTACACCTCCCAGA.................................................................................................................................................................... 180.330.00---------------------------------0.33-----------------------
......................................................................TTCTACACCTCCCAT..................................................................................................................................................................... 1580.120.12--------0.12------------------------------------------------