ID: uc008jeh.32
GENE: Nup214(32)
chr2:31906329-31906578+


(1)
AGO.mut
(3)
AGO1.ip
(17)
AGO2.ip
(2)
AGO3.ip
(10)
B-CELL
(32)
BRAIN
(3)
CELL-LINE
(2)
DGCR8.mut
(7)
EMBRYO
(9)
ESC
(7)
FIBROBLAST
(3)
HEART
(4)
LIVER
(1)
LUNG
(4)
LYMPH
(17)
OTHER
(8)
OTHER.mut
(1)
PIWI.ip
(5)
SKIN
(8)
SPLEEN
(18)
TESTES
(4)
THYMUS
(6)
TOTAL-RNA
(1)
UTERUS

Sense strand
TTTCTGATGTCTTCCTTCTCAGAGCCACGGTAAAGGCTTACTCTGGGCTAGAAGCCGGTTTCCTCTGAGTCTGTTGACTCGGTCCAAGCTTGTCACCACAGCTCCTGTGTGGTACATCCAAGACAGGTGACAGTGAGTGAGGTGTGGGCAGCATGAGGACTAGGGCCATGACAACCCTGTCCCATTCTCACCGCACCCAGGTTCGGGAGCAGCGGCAATACTGCATCCTTCGGTACCCTCGCCAGTCAGA
.........................................................................................................................................((.(((((((..((.(((.((((.((((.........))))))))))).))..)))))))))...................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormmjLiverKO2()
Liver Data. (Zcchc11 liver)
SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)
Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
mjTestesWT4()
Testes Data. (testes)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)
Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)
SRR306532(GSM750575)
19-24nt. (ago2 brain)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR306534(GSM750577)
19-24nt. (ago2 brain)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
SRR059770(GSM562832)
Treg_Dicer. (spleen)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)
SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (gland)
SRR059767(GSM562829)
DN3_Dicer. (thymus)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR306535(GSM750578)
19-24nt. (ago2 brain)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR402766(SRX117949)
source: ES PGK female cells. (ESC)
mjTestesWT3()
Testes Data. (testes)
SRR206940(GSM723281)
other. (brain)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)
SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)
SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)
SRR059765(GSM562827)
DN3_control. (thymus)
SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR306536(GSM750579)
19-24nt. (ago2 brain)
SRR059768(GSM562830)
Treg_control. (spleen)
SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)
SRR073955(GSM629281)
total RNA. (blood)
SRR346415(SRX098256)
source: Testis. (Testes)
SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)
SRR306539(GSM750582)
19-24nt. (ago2 brain)
SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR306543(GSM750586)
19-24nt. (ago2 brain)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)
SRR306533(GSM750576)
19-24nt. (ago2 brain)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)
SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)
SRR553584(SRX182790)
source: Heart. (Heart)
SRR306527(GSM750570)
19-24nt. (ago2 brain)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)
SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
SRR038744(GSM527279)
small RNA-Seq. (brain)
GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)
mjTestesWT1()
Testes Data. (testes)
SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)
SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)
SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)
SRR553582(SRX182788)
source: Brain. (Brain)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
SRR037905(GSM510441)
brain_rep2. (brain)
SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)
SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
GSM510452(GSM510452)
newborn_rep8. (total RNA)
SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)
SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR069834(GSM304914)
Analysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzer. (blood)
SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)
SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR206939(GSM723280)
other. (brain)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR073954(GSM629280)
total RNA. (blood)
SRR037914(GSM510451)
newborn_rep7. (total RNA)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR038741(GSM527276)
small RNA-Seq. (brain)
SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
SRR306529(GSM750572)
19-24nt. (ago2 brain)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
RuiDcrWT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)
SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)
SRR306530(GSM750573)
19-24nt. (ago2 brain)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)
SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR402761(SRX117944)
source: ES E14 male cells. (ESC)
SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)
SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)
SRR525241(SRA056111/SRX170317)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR206942(GSM723283)
other. (brain)
SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)
SRR042476(GSM539868)
mouse heart tissue [09-002]. (heart)
SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)
GSM510454(GSM510454)
newborn_rep10. (total RNA)
SRR306531(GSM750574)
19-24nt. (ago2 brain)
SRR059766(GSM562828)
DN3_Drosha. (thymus)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
...................................................................................................................................................................................TCCCATTCTCACCGCACCCAGT.................................................221100.008.00-1.002.007.002.001.00--5.00--1.00-5.00-5.00-1.006.00-3.001.004.00---2.002.002.003.00---1.002.001.00-1.00-3.00--2.003.003.00-1.00-1.00--2.00--2.002.00-1.002.00--1.001.00-2.001.001.00---1.00---------1.00------------1.001.00---1.00----1.001.00----1.00---1.00--1.00--1.00--------1.001.00----1.00----
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGACT.........................................................................................24197.0097.0013.005.00--5.006.003.00-2.008.001.005.004.00----1.00-2.00----4.003.00--1.00--3.00------1.00---1.00----1.002.00--------------1.00----2.002.001.001.002.001.001.00--2.001.00----1.001.00---1.00--1.00--------1.00----1.00----1.00------1.00----1.00-------1.00-1.00----1.00-
...................................................................................................................................................................................TCCCATTCTCACCGCACCCAGA.................................................22131.008.00--12.007.001.00-1.00------1.00---1.00-------1.00-1.00----1.00--------------------------------------------------------1.001.00----1.001.00--------------1.00---------------------------
........................................................................................................................................GTGAGGTGTGGGCAGCATGAGGACT.........................................................................................25125.0025.0016.001.00---2.002.00---1.00--------------------------1.00-----------------------------------------------------------------------------------1.00-------------1.00---
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGAC..........................................................................................23124.0024.00-5.00--2.002.001.005.00-1.001.00------------------1.00-----------------1.00--1.00-1.00---------------------1.00----------1.00-1.00---------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGA...........................................................................................22117.0017.00-3.00---1.001.00---2.001.00----------------1.00------2.00-----1.00----1.00--------------------2.00-----1.00----------------------------------------------1.00------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGG............................................................................................21112.0012.00-1.00--2.00---------------1.00------1.00----1.00---1.00---1.002.00------------------1.00-----------------1.00------------------------------------------------------------
...................................................................................................................................................................................TCCCATTCTCACCGCACCCAGC.................................................22111.008.00--6.003.00---------1.00---1.00-------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAG.............................................................................................20110.0010.00----1.00---------3.00-1.00---------------------------------1.00---------1.00----1.001.00------------------------------------------------1.00-----------------------
...........................................................................................................................................AGGTGTGGGCAGCATGAGGACT.........................................................................................22110.0010.00-----2.00-----1.00----2.00----------------------------3.00-1.00--------------------------------------------1.00----------------------------------------------
...................................................................................................................................................................................TCCCATTCTCACCGCACCCAG..................................................2118.008.00-1.00-2.001.00----------------1.00------------------------------------------------------------------------------------1.00-----------------1.00-----------1.00--
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGT...........................................................................................2218.0012.00-------7.00--------------------------1.00--------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGA..............................................................................................1916.006.00----1.00-----------------------------------1.00-----------1.002.00-----------------------------------------------1.00-------------------------------------
........................................................................................................................................GTGAGGTGTGGGCAGCATGAGGA...........................................................................................2316.006.00-----1.003.00-1.00------------1.00---------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................GAGGTGTGGGCAGCATGAGG............................................................................................2015.005.00-----------------------4.00----------------1.00--------------------------------------------------------------------------------------------------
........................................................................................................................................GTGAGGTGTGGGCAGCATGAGGAC..........................................................................................2414.004.00-1.00--1.00-1.00-1.00----------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAA.............................................................................................2014.006.00--------------------------------------------------------------------------------------1.00----------1.00----------------1.00------------------1.00-----
..........................................................................................................................................GAGGTGTGGGCAGCATGAGGACT.........................................................................................2314.004.00----------1.00-----2.00--------------------------------------------------------------1.00-----------------------------------------------------------
..............................................................................................................................................TGTGGGCAGCATGAGGACTAGGG.....................................................................................2313.003.00----------1.00-1.00-------------------1.00----------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGAA..........................................................................................2313.0017.00----------1.00---1.00-----------------------------------------1.00----------------------------------------------------------------------------------
..........................................................................................................................................GAGGTGTGGGCAGCATGAGGA...........................................................................................2113.003.00------1.00--------------------------------------------------------------------------1.00-------------------------------------------1.00-------------
.......................................................................................................................................................................................ATTCTCACCGCACCCAGT.................................................183.000.00---------------2.00---1.00-----------------------------------------------------------------------------------------------------------------------
..............................................................CTCTGAGTCTGTTGACC...........................................................................................................................................................................173.000.00------------------------------3.00------------------------------------------------------------------------------------------------------------
..............................................................................................................................................TGTGGGCAGCATGAGGACTAGG......................................................................................2212.002.00--------1.00-----------------------------------------------------1.00----------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGAT..........................................................................................2312.0017.00--------------1.00-------1.00--------------------------------------------------------------------------------------------------------------------
........................................................................................................................................GTGAGGTGTGGGCAGCATGAGGAT..........................................................................................2412.006.00------1.00---------1.00--------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGACTA........................................................................................2512.002.00---------1.00----------------1.00----------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGTAT.........................................................................................2412.0012.00-----------------2.00-------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................AGTGAGGTGTGGGCAGCATGAGGAAT.........................................................................................262.000.00-------------------2.00-----------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................CCATTCTCACCGCACCCAGT.................................................202.000.00-------------------1.00---------------------------------------------------1.00-------------------------------------------------------------------
...........................................................................................................................................AGGTGTGGGCAGCATGAGGAA..........................................................................................2111.001.00------------1.00------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................AGGTGTGGGCAGCATGAGTACT.........................................................................................2211.001.00------------1.00------------------------------------------------------------------------------------------------------------------------------
........................................................................GTTGACTCGGTCCAAGCTT...............................................................................................................................................................1911.001.00---------------------------------------------------------------------------1.00---------------------------------------------------------------
...........................................................................................................................................................AGGACTAGGGCCATGACA.............................................................................1811.001.00---------------------------------------------------------------------------------------------------1.00---------------------------------------
..........................................CTGGGCTAGAAGCCGAGTA.............................................................................................................................................................................................191.000.00----------------------------------------------------------------------------1.00--------------------------------------------------------------
...............................................................................................................................................................................................................AGCAGCGGCAATACTGCTT........................191.000.00-------------------------------------------------1.00-----------------------------------------------------------------------------------------
...........................................................................................................................................AGGTGTGGGCAGCATGAGGAAA.........................................................................................2211.001.00--------------------------------------1.00----------------------------------------------------------------------------------------------------
....................................................................................................................................................................................CCCATTCTCACCGCACCCAGT.................................................211.000.00--------1.00----------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................GTGAGGTGTGGGCAGCATGAG.............................................................................................2111.001.00------------------------------------1.00------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................TTCGGGAGCAGCGGCAATA..............................1911.001.00------------------------------------1.00------------------------------------------------------------------------------------------------------
...................................................................................................AGCTCCTGTGTGGTAAACA....................................................................................................................................191.000.00----------1.00--------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGACTTA.......................................................................................2611.0097.00--------------1.00----------------------------------------------------------------------------------------------------------------------------
............................................................................................................................AGGTGACAGTGAGTGGGGT...........................................................................................................191.000.00-----------------------------------------------------------1.00-------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGC..............................................................................................1911.001.00------------------------------------------------------------------------------------------------------------------------------1.00------------
...........................................................................................................................................AGGTGTGGGCAGCATGAGGACTAT.......................................................................................2411.001.00-------------------------------------------------------------1.00-----------------------------------------------------------------------------
...........................................................................................................................................AGGTGTGGGCAGCATGAGGACTA........................................................................................2311.001.00------------------------------------------------------------------------------------------------------1.00------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGAGCA.........................................................................................2411.0010.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGACA.........................................................................................2411.0024.00------------------------------------------------------------------------------------------------------------1.00------------------------------
.................................................................................................................................................................................TGTCCCATTCTCACCGCACCCAG..................................................2311.001.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAAA............................................................................................2111.006.00-----------------------------------------------------------1.00-------------------------------------------------------------------------------
..............................................................................................................................................TGTGGGCAGCATGAGGACTAGGA.....................................................................................2311.002.00------------1.00------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGAAA.........................................................................................2411.0017.00----------------------------------------------------------------------------------------------------------------------1.00--------------------
............................................................................................................................................GGTGTGGGCAGCATGAGGA...........................................................................................1911.001.00--------------------------------------1.00----------------------------------------------------------------------------------------------------
.....................................................................................................................................TGAGTGAGGTGTGGGCATCGC................................................................................................211.000.00-----------------------------------------------------------------------------------------------------------1.00-------------------------------
.......................................................................................................................................AGTGAGGTGTGGGCAGCATGAGGACT.........................................................................................2611.001.00---------------------------------1.00---------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGACTAT.......................................................................................2611.002.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................AGGTGTGGGCAGCATGAG.............................................................................................1811.001.00---------------------1.00---------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................AGCAGCGGCAATACTGTTG........................191.000.00-------------------------------------------------1.00-----------------------------------------------------------------------------------------
...........................................................................................................................................AGGTGTGGGCAGCATGAGGA...........................................................................................2011.001.00--------------------1.00----------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGACTT........................................................................................2511.0097.00-------------------------------------1.00-----------------------------------------------------------------------------------------------------
................................................................................................................................................................................CTGTCCCATTCTCACCGCACC.....................................................2111.001.00---1.00---------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................GTGAGGTGTGGGCAGCATGAGA............................................................................................2211.001.00---------------------------------------------------------------------------1.00---------------------------------------------------------------
..................................................................................................................................................................................GTCCCATTCTCACCGCACCCAG..................................................2211.001.00---------------------------------------------------------1.00---------------------------------------------------------------------------------
.............................................................................................................................................GTGTGGGCAGCATGAGGACTAGAA.....................................................................................241.000.00--------------1.00----------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATG...............................................................................................1811.001.00---------------------------------------------------------------------------------------------------------------------------1.00---------------
........................................................................................................................................GTGAGGTGTGGGCAGCATGAGG............................................................................................2211.001.00---------------------1.00---------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................GAGGTGTGGGCAGCATGAGGAC..........................................................................................2211.001.00----------------1.00--------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCCCATTCTCACCGCACCCAAT.................................................221.000.00--1.00----------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGAATT........................................................................................2511.0017.00--------------------------1.00----------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCCCATTCTCACCGCACCAAGT.................................................221.000.00----------------------------------------------------------------------------------1.00--------------------------------------------------------
..........................................................................................................................................GAGGTGTGGGCAGCATGAGGACTAA.......................................................................................251.000.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGACAAT.......................................................................................2611.0024.00----1.00--------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GGTTCGGGAGCAGCGGCAATACTGC..........................2511.001.00----------------------------------------------------------------------------------------------------------------1.00--------------------------

Antisense strand
TTTCTGATGTCTTCCTTCTCAGAGCCACGGTAAAGGCTTACTCTGGGCTAGAAGCCGGTTTCCTCTGAGTCTGTTGACTCGGTCCAAGCTTGTCACCACAGCTCCTGTGTGGTACATCCAAGACAGGTGACAGTGAGTGAGGTGTGGGCAGCATGAGGACTAGGGCCATGACAACCCTGTCCCATTCTCACCGCACCCAGGTTCGGGAGCAGCGGCAATACTGCATCCTTCGGTACCCTCGCCAGTCAGA
.........................................................................................................................................((.(((((((..((.(((.((((.((((.........))))))))))).))..)))))))))...................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormmjLiverKO2()
Liver Data. (Zcchc11 liver)
SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)
Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
mjTestesWT4()
Testes Data. (testes)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)
Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)
SRR306532(GSM750575)
19-24nt. (ago2 brain)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR306534(GSM750577)
19-24nt. (ago2 brain)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
SRR059770(GSM562832)
Treg_Dicer. (spleen)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)
SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (gland)
SRR059767(GSM562829)
DN3_Dicer. (thymus)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR306535(GSM750578)
19-24nt. (ago2 brain)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR402766(SRX117949)
source: ES PGK female cells. (ESC)
mjTestesWT3()
Testes Data. (testes)
SRR206940(GSM723281)
other. (brain)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)
SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)
SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)
SRR059765(GSM562827)
DN3_control. (thymus)
SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR306536(GSM750579)
19-24nt. (ago2 brain)
SRR059768(GSM562830)
Treg_control. (spleen)
SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)
SRR073955(GSM629281)
total RNA. (blood)
SRR346415(SRX098256)
source: Testis. (Testes)
SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)
SRR306539(GSM750582)
19-24nt. (ago2 brain)
SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR306543(GSM750586)
19-24nt. (ago2 brain)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)
SRR306533(GSM750576)
19-24nt. (ago2 brain)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)
SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)
SRR553584(SRX182790)
source: Heart. (Heart)
SRR306527(GSM750570)
19-24nt. (ago2 brain)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)
SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
SRR038744(GSM527279)
small RNA-Seq. (brain)
GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)
mjTestesWT1()
Testes Data. (testes)
SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)
SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)
SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)
SRR553582(SRX182788)
source: Brain. (Brain)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
SRR037905(GSM510441)
brain_rep2. (brain)
SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)
SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
GSM510452(GSM510452)
newborn_rep8. (total RNA)
SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)
SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR069834(GSM304914)
Analysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzer. (blood)
SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)
SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR206939(GSM723280)
other. (brain)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR073954(GSM629280)
total RNA. (blood)
SRR037914(GSM510451)
newborn_rep7. (total RNA)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR038741(GSM527276)
small RNA-Seq. (brain)
SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
SRR306529(GSM750572)
19-24nt. (ago2 brain)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
RuiDcrWT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)
SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)
SRR306530(GSM750573)
19-24nt. (ago2 brain)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)
SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR402761(SRX117944)
source: ES E14 male cells. (ESC)
SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)
SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)
SRR525241(SRA056111/SRX170317)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR206942(GSM723283)
other. (brain)
SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)
SRR042476(GSM539868)
mouse heart tissue [09-002]. (heart)
SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)
GSM510454(GSM510454)
newborn_rep10. (total RNA)
SRR306531(GSM750574)
19-24nt. (ago2 brain)
SRR059766(GSM562828)
DN3_Drosha. (thymus)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
..................................................GAAGCCGGTTTCCTCTGACTC................................................................................................................................................................................... 211.000.00----------------------------------------------------------------------------1.00--------------------------------------------------------------
..........................................................................................................GTGTGGTACATCCAAGACAGGTT......................................................................................................................... 231.000.00-----------------------------------------------------------------------------------------------------------------------------------1.00-------
............................................................................ACTCGGTCCAAGCTTGTCACCACAGCTCCT................................................................................................................................................ 3011.001.00---------------------------------------------------------------1.00---------------------------------------------------------------------------
...............................................................................................................................................................................................................AGCAGCGGCAATACTGCATCCTT.................... 2311.001.00----------------------------------------------1.00--------------------------------------------------------------------------------------------
............................................................................................................................................................................AACCCTGTCCCATTCTCACCGCACCCA................................................... 2711.001.00-------------------------------------------------------------------------------------------------------------------------------1.00-----------
........................................................................................................................................................................TGACAACCCTGTCCCATTCTCAC........................................................... 2311.001.00--------------------------------------------------------1.00----------------------------------------------------------------------------------
......................................................CCGGTTTCCTCTGA...................................................................................................................................................................................... 14100.200.20-------------------------------------------------0.10----------------------------------------------------------------------------------------0.10