ID: uc008isc.32
GENE: Abca2(33)
chr2:25299458-25299639+


(1)
AGO.mut 		(6)
AGO2.ip 		(17)
BRAIN 		(2)
CELL-LINE 		(3)
DCR.mut 		(2)
DGCR8.mut 		(3)
EMBRYO 		(4)
ESC 		(1)
LIVER 		(5)
OTHER 		(3)
OTHER.mut 		(1)
OVARY 		(8)
PIWI.ip 		(2)
PIWI.mut 		(4)
SPLEEN 		(22)
TESTES 		(1)
THYMUS 		(1)
UTERUS

Sense strand
ACCAACCACCCCATGAACAAGACCAGTGCTAGCCTCTCCCTGGATTACCTGTGAGTGAGGCAGACCAAGTTGAGGAGGGGCAGGACCACCTCGTCCTGACACCTCCTGGAACTGAGTGCTGTCCCCTTCTAGACTGCAGGGCACAGATGTGGTCATCGCCATCTTCATCATTGTGGCCATGT
....................................................(((...(((((((((..((.((((((..((((((......))))))...)))))).))..)).)).)))))...))).....................................................
..................................................51...............................................................................132................................................
SizePerfect hitTotal NormPerfect NormSRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		GSM261958(GSM261958)
oocytesmallRNA-24to30. (oocyte)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR014234(GSM319958)
Ovary total. (ovary)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)
..................................................GTGAGTGAGGCAGACCAAGTTGAGGAG.........................................................................................................27117.0017.005.00-3.00---2.001.00-1.00-----1.002.00-----1.00---1.00----------------------------------
..................................................GTGAGTGAGGCAGACCAAGTTGAGGAGG........................................................................................................28116.0016.004.001.001.002.00--2.00-3.001.00--2.00------------------------------------------------
..................................................GTGAGTGAGGCAGACCAAGTTGAGGA..........................................................................................................26115.0015.001.006.00-3.00------1.00------------1.00----------------------1.001.00-----1.00-------
.............................................................................................................AACTGAGTGCTGTCCCCTTCTAG..................................................23114.0014.00----5.002.00-----------2.001.00----------------1.001.00-----------------1.00---1.00--
..................................................GTGAGTGAGGCAGACCAAGTTGAGG...........................................................................................................25110.0010.001.001.00-1.00--1.00----3.001.00---------1.00---1.00----------------------------------
...................................................TGAGTGAGGCAGACCAAGTTGAGGAG.........................................................................................................2614.004.00-------1.00--1.00----1.00----1.00----------------------------------------
.............................................................................................................AACTGAGTGCTGTCCCCTTCTAGA.................................................2414.004.00----2.00--------------------1.00------------------------1.00----------
..................................................GTGAGTGAGGCAGACCAAGTTGAGGAGT........................................................................................................2814.0017.001.001.001.00------1.00---------------------------------------------------
.............................................................................................................AACTGAGTGCTGTCCCCTTCT....................................................2114.004.00-----1.00-------2.00----------------------------------1.00------------
.............................................................................................................AACTGAGTGCTGTCCCCTTCTAGT.................................................2413.0014.00-----1.00-------------------------1.00-----------------1.00-----------
...................................................TGAGTGAGGCAGACCAAGTTGAGGAGG........................................................................................................2713.003.001.00-1.001.00---------------------------------------------------------
...................................................TGAGTGAGGCAGACCAAGTTGAGGA..........................................................................................................2512.002.00--1.00-------1.00--------------------------------------------------
...................................................TGAGTGAGGCAGACCAAGTTGAGG...........................................................................................................2412.002.00-----------------------1.00-----------------------------------1.00-
..................................................GTGAGTGAGGCAGACCAAGTTG..............................................................................................................2212.002.00------------------1.00-----------------------1.00------------------
....................................................................................................................................ACTGCAGGGCACAGATGTGGTCATCGTTTT....................302.000.00------------------------2.00------------------------------------
.............TGAACAAGACCAGTGCTAGCCTCTCCC..............................................................................................................................................2711.001.00--1.00----------------------------------------------------------
..................................................GTGAGTGAGGCAGACCAAGTTGAGGAGGGG......................................................................................................3011.001.00--------------1.00----------------------------------------------
..............................................................................................................ACTGAGTGCTGTCCCCTTCTAGT.................................................231.000.00---------------------------------------------1.00---------------
................................................................................................................................................AGATGTGGTCATCGCCATCTT.................2111.001.00--------------------------------------------1.00----------------
......................................................................................................CTCCTGGAACTGAGTGCTTTCC..........................................................221.000.00-------------------1.00-----------------------------------------
.............................................................................................................AACTGAGTGCTGTCCCCTTCTATT.................................................241.000.00-----1.00-------------------------------------------------------
..........................................................................................................TGGAACTGAGTGCTGTCCCCTTCTAGA.................................................2711.001.00--------------------1.00----------------------------------------
..................................................GTGAGTGAGGCAGACCAAGTTGA.............................................................................................................2311.001.00----------------------------1.00--------------------------------
.............................................................................................................AACTGAGTGCTGTCCCCTTCTT...................................................2211.004.00-----1.00-------------------------------------------------------
.............TGAACAAGACCAGTGCTAGCCTCTCCCTG............................................................................................................................................2911.001.00--------------------------------------1.00----------------------
...................................................TGAGTGAGGCAGACCAAGTTGAG............................................................................................................2311.001.00-------1.00-----------------------------------------------------
.............TGAACAAGACCAGTGCTAGCCTCTCC...............................................................................................................................................2611.001.00---------------------1.00---------------------------------------
............................................................................................................................CCTTCTAGACTGCAGGCCTT......................................201.000.00---------------------------------1.00---------------------------
......................CCAGTGCTAGCCTCTCCCT.............................................................................................................................................1911.001.00-------------------------------------1.00-----------------------
...................................................TGAGTGAGGCAGACCAAGTTGAGGGG.........................................................................................................2611.002.00--------------------------------------------------------1.00----
.............................................................................................................AACTGAGTGCTGTCCCCTTCTAGTAT...............................................2611.0014.00---------------------------------------1.00---------------------
.............................................................................................................................CTTCTAGACTGCAGGGTGA......................................191.000.00----------------------------------------------------1.00--------
.......................................................TGAGGCAGACCAAGTTGAGA...........................................................................................................201.000.00---------------------1.00---------------------------------------
...................................................TGAGTGAGGCAGACCAAGTTG..............................................................................................................2111.001.00--------------1.00----------------------------------------------
...................................................TGAGTGAGGCAGACCAAGTTGAGGAGGG.......................................................................................................2811.001.00--------1.00----------------------------------------------------
...............................................................ACCAAGTTGAGGAGGGGCAGGACCACC............................................................................................2711.001.00-1.00-----------------------------------------------------------
............ATGAACAAGACCAGTGCTAGCCTCTCCC..............................................................................................................................................2811.001.00----------------------------------------1.00--------------------
.............TGAACAAGACCAGTGCTAGCCTCTCCCT.............................................................................................................................................2811.001.00-1.00-----------------------------------------------------------
..................................................GTGAGTGAGGCAGACCAAGTTGAGGATTAT......................................................................................................3011.0015.00-------1.00-----------------------------------------------------
..................................................GTGAGTGAGGCAGACCAAGTTGAG............................................................................................................2411.001.00---------1.00---------------------------------------------------
.........................................................................................................CTGGAACTGAGTGCTGTCCCCTTCTAG..................................................2711.001.00-------------------------1.00-----------------------------------
..........................TGCTAGCCTCTCCCTGGATT........................................................................................................................................2011.001.00-------------------1.00-----------------------------------------
...............................................................................................................................TCTAGACTGCAGGGCACAGA...................................2020.500.50----------------------------0.50--------------------------------
.................................................................................AGGACCACCTCGT........................................................................................1390.220.22-----------------------------0.22-------------------------------

Antisense strand
ACCAACCACCCCATGAACAAGACCAGTGCTAGCCTCTCCCTGGATTACCTGTGAGTGAGGCAGACCAAGTTGAGGAGGGGCAGGACCACCTCGTCCTGACACCTCCTGGAACTGAGTGCTGTCCCCTTCTAGACTGCAGGGCACAGATGTGGTCATCGCCATCTTCATCATTGTGGCCATGT
....................................................(((...(((((((((..((.((((((..((((((......))))))...)))))).))..)).)).)))))...))).....................................................
..................................................51...............................................................................132................................................
SizePerfect hitTotal NormPerfect NormSRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		GSM261958(GSM261958)
oocytesmallRNA-24to30. (oocyte)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR014234(GSM319958)
Ovary total. (ovary)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)
.............................................................................................TCCTGACACCTCCTGAAG....................................................................... 183.000.00---------------------------2.00----1.00----------------------------
.............................................................................................TCCTGACACCTCCTGAA........................................................................ 172.000.00----------------------------------1.00----------------1.00---------
...........................................................................................................................................................TCGCCATCTTCATCACG.......... 171.000.00---------------------------------------------------------1.00---
......................CCAGTGCTAGCCTCTGCG.............................................................................................................................................. 181.000.00-----------------------------------------1.00-------------------
.............................................................................................TCCTGACACCTCCTGAGAT...................................................................... 191.000.00-----------------------------1.00-------------------------------
.............................................................................................TCCTGACACCTCCTGAC........................................................................ 171.000.00-------------------------------------------------------1.00-----
.............................................................................................TCCTGACACCTCCTGAAGT...................................................................... 191.000.00-------------------------------------------1.00-----------------
.............................................................................................................AACTGAGTGCTGTCCAACT...................................................... 191.000.00------------------------------1.00------------------------------
......................................................................TGAGGAGGGGCAGGAC................................................................................................ 1660.170.17------------------------------------------------------------0.17