ID: uc008hsa.6
GENE: Ldb1(2)
chr19:46110440-46110646-


(1)
AGO.mut 		(3)
AGO1.ip 		(9)
AGO2.ip 		(2)
AGO3.ip 		(6)
B-CELL 		(19)
BRAIN 		(1)
CELL-LINE 		(1)
DCR.mut 		(1)
DGCR8.mut 		(8)
EMBRYO 		(9)
ESC 		(3)
FIBROBLAST 		(2)
HEART 		(2)
KIDNEY 		(5)
LIVER 		(1)
LUNG 		(4)
LYMPH 		(12)
OTHER 		(8)
OTHER.mut 		(3)
PIWI.ip 		(2)
PIWI.mut 		(4)
SKIN 		(5)
SPLEEN 		(23)
TESTES 		(1)
TOTAL-RNA 		(2)
UTERUS

Sense strand
CACAGCCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGGGTAAGTGGATCGCAGCCAGCCAGGAAGCTTTTCCTCTGCATGCGTCTGAGCAGAGAGGGGTGGAACAGCACGGCTCAGCCACTGACCTCAGTTCCTTCCCTCCCCAGGAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTA
........................................................................................................((((((.(((((.....((.((((...))))))...))))).)))))).......................................................
................................................................................................97..........................................................157................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjTestesWT4()
Testes Data. (testes)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		mjLiverWT1()
Liver Data. (liver)		mjTestesWT1()
Testes Data. (testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR346415(SRX098256)
source: Testis. (Testes)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		mjTestesWT3()
Testes Data. (testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR073954(GSM629280)
total RNA. (blood)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR525240(SRA056111/SRX170316)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR037922(GSM510460)
e12p5_rep4. (embryo)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR037937(GSM510475)
293cand2. (cell line)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR059773(GSM562835)
CD4_Dicer. (spleen)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		mjTestesWT2()
Testes Data. (testes)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR039610(GSM527274)
small RNA-Seq. (brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)
.....................................................................................................AGAGAGGGGTGGAACAGCACGGCT..................................................................................24170.0070.003.008.003.006.006.002.001.009.008.00---3.00-3.00--1.001.00-2.004.00---------1.00-------------1.00-----------1.00--1.00----1.00---1.00-------------------------1.00------1.00-1.001.00-
....................................................................................................CAGAGAGGGGTGGAACAGCACGGCT..................................................................................25144.0044.003.007.001.005.002.007.005.00--4.002.00-1.00-----2.00-------------1.00-------------1.00---------------------1.00--------1.00---1.00-------------------------
....................................................................................................CAGAGAGGGGTGGAACAGCACGG....................................................................................23127.0027.0011.001.002.00-1.00------------1.00--2.00----1.00----1.00-1.00--1.00-------1.00----------2.00--------1.00-------1.00-----------------------------------
.....................................................................................................AGAGAGGGGTGGAACAGCACGGC...................................................................................23120.0020.00-1.001.001.005.00-----1.00--1.003.00------------1.00---1.00-1.00-----------------------------------------1.00----------------1.00----1.00-1.00-------
.....................................................................................................AGAGAGGGGTGGAACAGCACGG....................................................................................22116.0016.002.00-1.00-1.00-3.00---1.00-2.00-------1.00--------------------1.00-----------2.00--------------------------1.00-----------------1.00--------
...........................................................................................................................................................................ATGGTAACCAAACCGACTATAGAAT...........2519.009.00-2.006.00-1.00------------------------------------------------------------------------------------------------------
....................................................................................................CAGAGAGGGGTGGAACAGCACGGC...................................................................................2418.008.002.002.002.001.00---------------------1.00---------------------------------------------------------------------------------
.....................................................................................................AGAGAGGGGTGGAACAGCACGGCTAT................................................................................2617.0070.00---1.00-----------6.00-------------------------------------------------------------------------------------------
....................................................................................................CAGAGAGGGGTGGAACAGCACGGTAT.................................................................................2617.0027.00-----------7.00-----------------------------------------------------------------------------------------------
.....................................................................................................AGAGAGGGGTGGAACAGCACGGCTT.................................................................................2516.0070.00---2.00------1.00------1.001.00---------------------------------------------------------------------------1.00------------
........................................................................................................................................CTCAGTTCCTTCCCTCCCCAGT.................................................2216.004.001.00--------2.00---1.00-----------------------------1.00------1.00--------------------------------------------------------
..................................TGGAGCCTGGGATCGGGAGGC........................................................................................................................................................214.000.00-1.00--------------------------1.00----------------------1.00------------------------------------1.00------------------
...............................ACCTGGAGCCTGGGATCGGGAGGC........................................................................................................................................................244.000.001.00-1.00-------------1.00-------------------------------------------------1.00----------------------------------------
........................................................................................................................................CTCAGTTCCTTCCCTCCCCAG..................................................2114.004.00-------------4.00---------------------------------------------------------------------------------------------
.........................................................................................................................................TCAGTTCCTTCCCTCCCCAGT.................................................214.000.00----------------------------------1.00---------------1.00---------------------1.00------------------1.00---------------
................................................................................................................................................................................AACCAAACCGACTATAGAAT...........2013.003.00-1.002.00--------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................ATGGTAACCAAACCGACT..................1813.003.00-1.00--1.00-----------1.00------------------------------------------------------------------------------------------
.....................................................................................................AGAGAGGGGTGGAACAGCACGGA...................................................................................2313.0016.001.00---1.00----------------------------------------------------------------------------------------1.00-------------
.....................................................................................................AGAGAGGGGTGGAACAGCACGGT...................................................................................2313.0016.002.00---------------------------------------------------------------------1.00------------------------------------
................................................................................................TGAGCAGAGAGGGGTGGAACAGCACGG....................................................................................2713.003.00------------------------2.00-----------------1.00----------------------------------------------------------------
...........................ACATACCTGGAGCCTGGGATCGGGAG..........................................................................................................................................................2613.001.00-----------------------------3.00-----------------------------------------------------------------------------
...............................ACCTGGAGCCTGGGATCGGGAGG.........................................................................................................................................................232.000.00---------------------------2.00-------------------------------------------------------------------------------
......................................................................................................................................................................................ACCGACTATAGAATATTTGAGC...2212.002.00----------------------------------------1.00------1.00-----------------------------------------------------------
..........................................................................................................................................................................TATGGTAACCAAACCGACTATAGAATA..........2712.002.00--------------------------2.00--------------------------------------------------------------------------------
.....................................................................................................AGAGAGGGGTGGAACAGCACGGAAA.................................................................................2512.0016.001.00----------------1.00-----------------------------------------------------------------------------------------
...............................ACCTGGAGCCTGGGATCGG.............................................................................................................................................................1912.002.00--1.00--------------------------------1.00-----------------------------------------------------------------------
....................................................................................................CAGAGAGGGGTGGAACAGCACGGA...................................................................................2412.0027.00-------------------------------------------------2.00---------------------------------------------------------
.............................................................................................................................................................................GGTAACCAAACCGACTATAGAAT...........2312.002.00-------------------2.00---------------------------------------------------------------------------------------
....................................................................................................CAGAGAGGGGTGGAACAGCAC......................................................................................2112.002.00-------------------2.00---------------------------------------------------------------------------------------
.....................................................................................................AGAGAGGGGTGGAACAGCAC......................................................................................2012.002.00----------------------------------------------------------------------------1.00-----1.00------------------------
..............................TACCTGGAGCCTGGGATCGGGAGGC........................................................................................................................................................252.000.001.00-------------------------------------------1.00--------------------------------------------------------------
.....................................................................................................AGAGAGGGGTGGAACAGCACG.....................................................................................2112.002.00-----------------------1.00----------------1.00------------------------------------------------------------------
....................................................................................................CAGAGAGGGGTGGAACAGC........................................................................................1912.002.00----------1.00------------1.00-----------------------------------------------------------------------------------
.....................................................................................................AGAGAGGGGTGGAACAGCACGGCC..................................................................................2411.0020.00---------------------------------------------------------------------------------------1.00-------------------
......................................................................................TGCATGCGTCTGAGCAGG.......................................................................................................181.000.00----------------------------------------------------1.00------------------------------------------------------
........................................................................................................................................CTCAGTTCCTTCCCTCCCCAGTAA...............................................2411.004.00----------1.00------------------------------------------------------------------------------------------------
..................................TGGAGCCTGGGATCGGGAG..........................................................................................................................................................191.000.00-------------------1.00---------------------------------------------------------------------------------------
......................................................................................................GAGAGGGGTGGAACAGCACGGTA..................................................................................2311.001.00------------------------------------------------------------------------------1.00----------------------------
..............................................................................................................................................................................GTAACCAAACCGACTATAGAATATTTGAG....2911.001.00---------------------------------------1.00-------------------------------------------------------------------
..............................................TCGGGTAAGTGGATCGCAGCCAGCC........................................................................................................................................2511.001.00----------------------------------------------1.00------------------------------------------------------------
.....................................................................................................................................................................................AACCGACTATAGAATATTTGAGCT..2411.001.00---------------------------------1.00-------------------------------------------------------------------------
.....................................................................................................AGAGAGGGGTGGAACAGCACGGCTCAGC..............................................................................2811.001.00---1.00-------------------------------------------------------------------------------------------------------
.................................CTGGAGCCTGGGATCGGGAGGC........................................................................................................................................................221.000.00----------------------------------------------------1.00------------------------------------------------------
........AACTCCCATGTACCCACCT....................................................................................................................................................................................1911.001.00--1.00--------------------------------------------------------------------------------------------------------
..................................TGGAGCCTGGGATCGGGCGG.........................................................................................................................................................201.000.00------------------------------1.00----------------------------------------------------------------------------
.................................................................................................................................................................................ACCAAACCGACTATAGAATT..........201.000.00------------------------------------1.00----------------------------------------------------------------------
........AACTCCCATGTACCCACCTACATACC.............................................................................................................................................................................2611.001.00------------------------------------1.00----------------------------------------------------------------------
..........................................................................................................................................................................................ACTATAGAATATTTGAG....1711.001.00--------------------------------------1.00--------------------------------------------------------------------
......................................................................................................GAGAGGGGTGGAACAGCACGG....................................................................................2111.001.00-1.00---------------------------------------------------------------------------------------------------------
............................CATACCTGGAGCCTGGGATCGG.............................................................................................................................................................2211.001.00---------1.00-------------------------------------------------------------------------------------------------
........................................................................................................................................CTCAGTTCCTTCCCTCCCCAGTT................................................2311.004.00----------------------------1.00------------------------------------------------------------------------------
......................................................................................................................................................................................ACCGACTATAGAATATTTGAG....2111.001.00----------------------1.00------------------------------------------------------------------------------------
..................................................................................................................................................................................CCAAACCGACTATAGAATATGGT......231.000.00-------------------------------------------------------------1.00---------------------------------------------
......................................................................................................................................................................................ACCGACTATAGAATATTTGAGCT..2311.001.001.00----------------------------------------------------------------------------------------------------------
...........................ACATACCTGGAGCCTGGGATCGGGA...........................................................................................................................................................2511.001.00--------------------------------------------1.00--------------------------------------------------------------
......................................................................................................GAGAGGGGTGGAACAGCACGGA...................................................................................2211.001.00-----------------------------------------------------------------------------------1.00-----------------------
.....................................................................................................AGAGAGGGGTGGAACAGCACGGTT..................................................................................2411.0016.00-----------------------1.00-----------------------------------------------------------------------------------
...................................................................................................................................................................................CAAACCGACTATAGAATATTTGA.....2311.001.00---------------------------------------1.00-------------------------------------------------------------------
.........................................................................................................................................................................................GACTATAGAATATTTGAGC...1911.001.00----------------------1.00------------------------------------------------------------------------------------
....................................................................................................................................................................................AAACCGACTATAGAATATTTGAG....2311.001.00------------------------------------------------1.00----------------------------------------------------------
................TGTACCCACCTACATACCTGGAGCCT.....................................................................................................................................................................2611.001.00--------------------------1.00--------------------------------------------------------------------------------
....................................................................................................CAGAGAGGGGTGGAACAGCACGGTTT.................................................................................2611.0027.00-------------------------------------1.00---------------------------------------------------------------------
...........................................................................................................................................................................................CTATAGAATATTTGAAAAA.191.000.00-----------------------------------------------------------------------------------------------------1.00-----
.......................................................................................................AGAGGGGTGGAACAGCACGGCT..................................................................................2211.001.00-1.00---------------------------------------------------------------------------------------------------------
...........................ACATACCTGGAGCCTGGGATCGGGAGTT........................................................................................................................................................2811.001.00-------------------------------------------------------------------1.00---------------------------------------
.....................................................................................................AGAGAGGGGTGGAACAGCACGGCTCT................................................................................261.000.00-------------------------------------------------------------------------------1.00---------------------------
....................................................................................................CAGAGAGGGGTGGAACAGCACAAT...................................................................................2411.002.001.00----------------------------------------------------------------------------------------------------------
....................................................................................................CAGAGAGGGGTGGAACAGCACGGT...................................................................................2411.0027.001.00----------------------------------------------------------------------------------------------------------
....................................................................................................CAGAGAGGGGTGGAACAGCACGGTA..................................................................................2511.0027.001.00----------------------------------------------------------------------------------------------------------
..........................TACATACCTGGAGCCTGGGATCGGGAGGC........................................................................................................................................................291.000.00-------------------------------------------------------------------------1.00---------------------------------
.........................................................................................................................................TCAGTTCCTTCCCTCCCCAGTA................................................221.000.00------------------------------------------------------------------------------------1.00----------------------
...................................................................................................GCAGAGAGGGGTGGAACAGCACGG....................................................................................2411.001.00------------------------------------------1.00----------------------------------------------------------------
.......................ACCTACATACCTGGAGCCTGGGATCG..............................................................................................................................................................2611.001.00------------------------1.00----------------------------------------------------------------------------------
......................................................................................................................................................................ACCATATGGTAACCAAACCGACT..................2311.001.00-1.00---------------------------------------------------------------------------------------------------------
.................................CTGGAGCCTGGGATCGGGTAAGTGGATCGC................................................................................................................................................3011.001.00------------------------------------------------1.00----------------------------------------------------------
......................................................................................................GAGAGGGGTGGAACAGCACGGCT..................................................................................2311.001.00------------------1.00----------------------------------------------------------------------------------------
...............................................................................................................................................................................TAACCAAACCGACTATAGAATATTTGAGC...2911.001.00------------------------------------------------------------------------------------------------1.00----------
.....................................................................................................AGAGAGGGGTGGAACAGCACGGCTCA................................................................................2611.001.00---------------------------------------------1.00-------------------------------------------------------------
...............ATGTACCCACCTACATACCTGGAAA.......................................................................................................................................................................251.000.00-------------------------------------------------------1.00---------------------------------------------------
...............................ACCTGGAGCCTGGGAGACA.............................................................................................................................................................191.000.00-------------------------------------------------------------------------------------1.00---------------------
......................................................................................................GAGAGGGGTGGAACAGCACGGC...................................................................................2211.001.00--1.00--------------------------------------------------------------------------------------------------------
...........................ACATACCTGGAGCCTGGGAT................................................................................................................................................................2011.001.00----1.00------------------------------------------------------------------------------------------------------
.....................................................................................................AGAGAGGGGTGGAACAGCACGA....................................................................................2211.002.00-----------------1.00-----------------------------------------------------------------------------------------
........................................................................................................................................CTCAGTTCCTTCCCTCCCCAGA.................................................2211.004.00------------------------------1.00----------------------------------------------------------------------------
...................................................................................................GCAGAGAGGGGTGGAACAGCACGGAA..................................................................................2611.001.00---------1.00-------------------------------------------------------------------------------------------------
........AACTCCCATGTACCCACCTA...................................................................................................................................................................................2011.001.00----------------------------1.00------------------------------------------------------------------------------
.....................................................................................................AGAGAGGGGTGGAACAGCACGGCAG.................................................................................2511.0020.00-------------------------------------------------------------------------------------------------------1.00---
......................................................................................................................................................................................ACCGACTATAGAATATTTGAGCTT.2411.001.00---------------------------------------------------1.00-------------------------------------------------------
................................................................................................................................................................................AACCAAACCGACTATAGAATATTT.......2411.001.00----------------1.00------------------------------------------------------------------------------------------
........................................................................................................................................CTCAGTTCCTTCCCTCCCCAGTAT...............................................2411.004.001.00----------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................GTAACCAAACCGACTATAGAATATTTGAGC...3011.001.00--------------------------------------------------------------------------1.00--------------------------------
....................................GAGCCTGGGATCGGGAGG.........................................................................................................................................................181.000.00------------------------------------------------------------------------------------------1.00----------------
........................................................................................................................................................................CATATGGTAACCAAACC......................1711.001.00--------------------------------------------------------------1.00--------------------------------------------
....................................................................................................CAGAGAGGGGTGGAACAGCACGGCTA.................................................................................2611.0044.00------------1.00----------------------------------------------------------------------------------------------
...........................ACATACCTGGAGCCTGGGATCGGG............................................................................................................................................................2411.001.001.00----------------------------------------------------------------------------------------------------------
.......................................................................AGGAAGCTTTTCCTCCTT......................................................................................................................181.000.00----------------------------------------------------------------1.00------------------------------------------
.....................................................................................................AGAGAGGGGTGGAACAGCACGGCTA.................................................................................2511.0070.001.00----------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................ATATGGTAACCAAACCGACTATAGAATAT.........2911.001.00----------------------------------------------------------1.00------------------------------------------------
........................................................................................................................................CTCAGTTCCTTCCCTCCCCAGAA................................................2311.004.001.00----------------------------------------------------------------------------------------------------------
.....................................................................................................AGAGAGGGGTGGAACAGCACGGAA..................................................................................2411.0016.00-------------------------1.00---------------------------------------------------------------------------------
.....................................................................................................................................................................................AACCGACTATAGAATATTTGAGCTTA2611.001.00-------------------------------------1.00---------------------------------------------------------------------
.............................ATACCTGGAGCCTGGGATCGGG............................................................................................................................................................2211.001.00-----------------------------------------------1.00-----------------------------------------------------------
...............................................................................................................................................................................TAACCAAACCGACTATAGA.............1911.001.001.00----------------------------------------------------------------------------------------------------------
........................................................................................CATGCGTCTGAGCAGAGAGGGGTGGAACAGCACGGCTCAGCCACTGACCTCAGTTCCTTCCCTCCCCAG..................................................6911.001.00----------------------------------------------------------------------------------------------------1.00------
....................................................................................................CAGAGAGGGGTGGAACAGCACGGCTT.................................................................................2611.0044.00---1.00-------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................AAACCGACTATAGAATATTTGAGCT..2511.001.00----------------------1.00------------------------------------------------------------------------------------
.....................................................................................................................................................................................AACCGACTATAGAATA..........1611.001.00-------------------------------1.00---------------------------------------------------------------------------
.................................CTGGAGCCTGGGATCGG.............................................................................................................................................................1711.001.00--------------------------------------1.00--------------------------------------------------------------------
.............................................................................................................................................................................GGTAACCAAACCGACTATAGAATATTTGA.....2911.001.00----------------------1.00------------------------------------------------------------------------------------
.......................................................................................................................................CCTCAGTTCCTTCCCTCCCTTA..................................................221.000.00----------------------------------1.00------------------------------------------------------------------------
.......................................................................................................................................................................................CCGACTATAGAATATTTGAGC...2111.001.00---1.00-------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................TATAGAATATTTGAGCT..1730.670.67--------------------------------0.67--------------------------------------------------------------------------
..................................................................................................AGCAGAGAGGGGTGGAACA..........................................................................................1920.500.50-----------------------0.50-----------------------------------------------------------------------------------
.............................................................................................................................................................................................ATAGAATATTTGAGC...1570.290.29---------------------------------0.14------------------------------------------------------------------------0.14
.............................................................................................................................................................................................ATAGAATATTTGAGCT..1650.200.20----------0.20------------------------------------------------------------------------------------------------

Antisense strand
CACAGCCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGGGTAAGTGGATCGCAGCCAGCCAGGAAGCTTTTCCTCTGCATGCGTCTGAGCAGAGAGGGGTGGAACAGCACGGCTCAGCCACTGACCTCAGTTCCTTCCCTCCCCAGGAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTA
........................................................................................................((((((.(((((.....((.((((...))))))...))))).)))))).......................................................
................................................................................................97..........................................................157................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjTestesWT4()
Testes Data. (testes)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		mjLiverWT1()
Liver Data. (liver)		mjTestesWT1()
Testes Data. (testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR346415(SRX098256)
source: Testis. (Testes)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		mjTestesWT3()
Testes Data. (testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR073954(GSM629280)
total RNA. (blood)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR525240(SRA056111/SRX170316)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR037922(GSM510460)
e12p5_rep4. (embryo)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR037937(GSM510475)
293cand2. (cell line)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR059773(GSM562835)
CD4_Dicer. (spleen)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		mjTestesWT2()
Testes Data. (testes)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR039610(GSM527274)
small RNA-Seq. (brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)
...................................................................................................................................................................................CAAACCGACTATAGAT............ 162.000.00--------------------------------------------------------1.00--1.00-----------------------------------------------
..................................TGGAGCCTGGGATCGCCA........................................................................................................................................................... 181.000.00----------------1.00------------------------------------------------------------------------------------------
.......................................................................................................................................................................................CCGACTATAGAATATAGG...... 181.000.00-----------------------------------------1.00-----------------------------------------------------------------
...........................................................................AGCTTTTCCTCTGCAGTT.................................................................................................................. 181.000.00--------------------------------------------------------------------------------------1.00--------------------
...................................................................................................................................................CCCTCCCCAGGAGGCACCGAC....................................... 211.000.00----------------1.00------------------------------------------------------------------------------------------
...........................................................................................................................CTCAGCCACTGACCTAGAC................................................................. 191.000.00-----------------------------------------------------------------------------------------1.00-----------------
........................CCTACATACCTGGAGC....................................................................................................................................................................... 1630.330.33----------0.33------------------------------------------------------------------------------------------------