ID: uc008gdl.7
GENE: Efemp2(8)
chr19:5480100-5480283+


(7)
AGO2.ip 		(1)
AGO3.ip 		(2)
B-CELL 		(12)
BRAIN 		(2)
CELL-LINE 		(1)
DCR.mut 		(1)
DGCR8.mut 		(9)
EMBRYO 		(1)
ESC 		(5)
FIBROBLAST 		(1)
LYMPH 		(6)
OTHER 		(1)
OTHER.ip 		(3)
OTHER.mut 		(3)
PIWI.ip 		(1)
PIWI.mut 		(1)
SKIN 		(1)
SPLEEN 		(15)
TESTES 		(1)
TOTAL-RNA 		(1)
UTERUS

Sense strand
CTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAGGTACAGGTGCTTGGGTGGGCAGGAGTTGAGCGGCTGGGAGCTTACTGTGAGTCCTAGAGTCCAACTCCACCTCCCTTGGCACAGATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACC
........................................................(((((.(((.((...(((((((.((..((((((.(((.....))))))))).)).))))))).)).)))..)))))....................................................
..................................................51.................................................................................134................................................
SizePerfect hitTotal NormPerfect NormSRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR037909(GSM510446)
newborn_rep2. (total RNA)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesWT2()
Testes Data. (testes)		GSM509276(GSM509276)
small RNA cloning by length. (testes)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR525238(SRA056111/SRX170314)
Second IgG control. (Blood)
.................................................................................................................ACTCCACCTCCCTTGGCACAGT.................................................22136.001.005.00---4.002.00-1.001.00-3.003.001.00----1.002.00-2.001.002.00------1.00-1.00--------1.00-1.001.00----1.00-1.00--1.00---
.................................................................................................................ACTCCACCTCCCTTGGCACAGA.................................................2215.005.00-----2.00-----------1.00-----1.00---------------------------1.00-----
...................................................TACAGGTGCTTGGGTGGGCAGGAG.............................................................................................................2413.003.00--3.00------------------------------------------------------
.....................................................................................................................................GATATTGACGAGTGTGAAACAGGTG..........................2512.002.00--------------1.00----1.00-------------------------------------
....................................................................................................................................................GAAACAGGTGCACACCAATGTTCT............2412.002.00--------2.00------------------------------------------------
...................TACCAGCTGCTGGCTACAAGGCTCTGC..........................................................................................................................................2712.002.00-----------------------------------------------1.00----1.00----
.......................................................................................................................................TATTGACGAGTGTGAAACAGGTGCAC.......................2612.002.00---------------1.001.00----------------------------------------
.......................................................GGTGCTTGGGTGGGCAGGAGTTG..........................................................................................................2312.002.00------------2.00--------------------------------------------
....................................................................................................................................................GAAACAGGTGCACACCAAT.................1912.002.00------1.00--------------------------1.00-----------------------
......................................................AGGTGCTTGGGTGGGCAGGAGTTG..........................................................................................................2412.002.00-------1.00-----1.00-------------------------------------------
..............................GGCTACAAGGCTCTGCCAAGAT....................................................................................................................................222.000.00-1.00----1.00--------------------------------------------------
.....................................................................................................................CACCTCCCTTGGCACAGT.................................................181.000.00-------1.00-------------------------------------------------
..........................TGCTGGCTACAAGGCTCTGCCA........................................................................................................................................2211.001.00-1.00-------------------------------------------------------
..................................................GTACAGGTGCTTGGGTGGGCAGGAGTTGAGCGGCTGGGAGCTTACTGTGAGTCCTAGAGTCCAACTCCACCTCCCTTGGCACAG..................................................8411.001.00---------------------------------------------1.00-----------
...........................GCTGGCTACAAGGCTCTGCCAAGA.....................................................................................................................................241.000.00---------1.00-----------------------------------------------
.......................................................................................................................................TATTGACGAGTGTGAAACAGGTGCA........................2511.001.00--------------1.00------------------------------------------
...TCACTGCCCACAAGGCTACCAGCTGC...........................................................................................................................................................2611.001.00---------------------------------------1.00-----------------
.................................................................................................................ACTCCACCTCCCTTGGCACAGTAA...............................................2411.001.00---------1.00-----------------------------------------------
.................GCTACCAGCTGCTGGCTA.....................................................................................................................................................1811.001.00-----------------------1.00---------------------------------
......................CAGCTGCTGGCTACAAGGCTCTGAA.........................................................................................................................................251.000.00---1.00-----------------------------------------------------
.........................................................TGCTTGGGTGGGCAGGAGTTT..........................................................................................................211.000.00-------------1.00-------------------------------------------
...........................................................................TTGAGCGGCTGGGAGC.............................................................................................1611.001.00--1.00------------------------------------------------------
......................CAGCTGCTGGCTACAAGGCTCTGCCAA.......................................................................................................................................2711.001.00---1.00-----------------------------------------------------
.........................................................................................................AGAGTCCAACTCCACCTCCCTAT........................................................231.000.00-1.00-------------------------------------------------------
.......................................................................................................................................TATTGACGAGTGTGAAACAGGT...........................2211.001.00-------------------1.00-------------------------------------
.........................................................................................................................................TTGACGAGTGTGAAACAGGTGCAC.......................2411.001.00---------------------------1.00-----------------------------
....................................................................................................................CCACCTCCCTTGGCACAGT.................................................191.000.00----------------------------------------------1.00----------
.............................TGGCTACAAGGCTCTGCCAAGATA...................................................................................................................................241.000.00---------1.00-----------------------------------------------
..........................................................................................................................................TGACGAGTGTGAAACAGGT...........................1911.001.00--------------------------1.00------------------------------
.........................................................TGCTTGGGTGGGCAGGAGTTGT.........................................................................................................221.000.00---------------------1.00-----------------------------------
...........................................................................................................................................GACGAGTGTGAAACAGGTGCACACC....................2511.001.00------1.00--------------------------------------------------
.......................AGCTGCTGGCTACAAGGCTCTGCCAA.......................................................................................................................................2611.001.00------------------------1.00--------------------------------
...................TACCAGCTGCTGGCTACAAGGCTCT............................................................................................................................................2511.001.00------------------------1.00--------------------------------
...........................................................................................................................................GACGAGTGTGAAACAGGT...........................1811.001.00----------------------------1.00----------------------------
....................................................................................................................................AGATATTGACGAGTGTGAAACAGGTG..........................2611.001.00----------------1.00----------------------------------------
....................................................................................................................................................GAAACAGGTGCACACCAATGTTCTGAGGCC......3011.001.00------------------------------------1.00--------------------
.......................................................GGTGCTTGGGTGGGCAGGAGTTGT.........................................................................................................2411.002.00--------------------------------------1.00------------------
...........................................................................................................................................GACGAGTGTGAAACAGGTGCAC.......................2211.001.00------1.00--------------------------------------------------
........................................................................................................................................ATTGACGAGTGTGAAACAGGT...........................2111.001.00-1.00-------------------------------------------------------
.........................................................................AGTTGAGCGGCTGG.................................................................................................1411.001.00----------------------------------1.00----------------------
.........................................................................AGTTGAGCGGCTGGGAGCAA...........................................................................................201.000.00-----------------------------------------1.00---------------
......................CAGCTGCTGGCTACAAGGCTCTGCC.........................................................................................................................................2511.001.00---1.00-----------------------------------------------------
.....................................................................................................................................GATATTGACGAGTGTGAAACAG.............................2211.001.00-1.00-------------------------------------------------------
.................................................................................................................ACTCCACCTCCCTTGGCACAG..................................................2111.001.00--------------------------------1.00------------------------
......................................................................................................................................ATATTGACGAGTGTGAAACAGGTGC.........................2511.001.00---1.00-----------------------------------------------------
.......................................................GGTGCTTGGGTGGGCAGGAGTT...........................................................................................................2211.001.00--1.00------------------------------------------------------
............................................................................................................................................ACGAGTGTGAAACA..............................1430.330.33------------------------------------------------------0.33--
.............................................................TGGGTGGGCAGGAGTTG..........................................................................................................1730.330.33-------------------------------------------------------0.33-

Antisense strand
CTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAGGTACAGGTGCTTGGGTGGGCAGGAGTTGAGCGGCTGGGAGCTTACTGTGAGTCCTAGAGTCCAACTCCACCTCCCTTGGCACAGATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACC
........................................................(((((.(((.((...(((((((.((..((((((.(((.....))))))))).)).))))))).)).)))..)))))....................................................
..................................................51.................................................................................134................................................
SizePerfect hitTotal NormPerfect NormSRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR037909(GSM510446)
newborn_rep2. (total RNA)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesWT2()
Testes Data. (testes)		GSM509276(GSM509276)
small RNA cloning by length. (testes)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR525238(SRA056111/SRX170314)
Second IgG control. (Blood)
...............................................................................GCGGCTGGGAGCTTACTGTGAGTCCTA.............................................................................. 2711.001.00-----------------------------------1.00---------------------
...............................................................................................................................GGCACAGATATTGACGAGTGTGAAACA.............................. 2711.001.00------------------------------1.00--------------------------
.............................................................................................................................TTGGCACAGATATTGACGAGTGTGAA................................. 2611.001.00---------------1.00-----------------------------------------
.......................................................................................................................................................ACAGGTGCACACCAATGTTCTG........... 2211.001.00-------------------------1.00-------------------------------
...........................................................................................................AGTCCAACTCCACCTCCCTTGGC...................................................... 2311.001.00-------------------------------------------------1.00-------
........................................................................................................................................................CAGGTGCACACCAATGTTCTGAGGCCCAA... 2911.001.00--------------------------------------------1.00------------
........................................................................................................................CTCCCTTGGCACAGAATGA............................................. 191.000.00-------------------------------------1.00-------------------
...........................................................................................................AGTCCAACTCCACCTC............................................................. 1640.250.25--------------------------------------------------------0.25