ID: uc008fep.9
GENE: (9)
chr18:65325026-65325275+


(1)
AGO.mut 		(4)
AGO2.ip 		(1)
B-CELL 		(15)
BRAIN 		(2)
CELL-LINE 		(2)
DGCR8.mut 		(3)
EMBRYO 		(2)
ESC 		(2)
FIBROBLAST 		(1)
KIDNEY 		(2)
LIVER 		(1)
LUNG 		(1)
LYMPH 		(6)
OTHER 		(2)
OTHER.mut 		(1)
OVARY 		(2)
SPLEEN 		(3)
TESTES 		(1)
TOTAL-RNA

Sense strand
AGTCTTGGCCTCCTTTTACCTATAAATCCTGGTTGCCGGAGGACACTAAGAGTTGAAACTGAGCTCTGGAAGGGCTACGGTCACTGCTGGGAAACAGGTGGTGTTCGATTGCCTCCTGATGTCAGAGAGCAGGGCATGGAAGTACGAATGGGTTCTGAGAACACTCCTGCTAACCCTGCCTGTCTTTCCATTCCCTGCAGCAGAGAGAGCCCTCGTCAAGGCTTCGGTCCTGCAGTGTTACCGACACGGT
................................................................................................................................((((((.(((((((.(((...(((((..(((....))).....)))))....))).))))))).))))))....................................................
..........................................................................................................................123..........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR206939(GSM723280)
other. (brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR073954(GSM629280)
total RNA. (blood)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		SRR206941(GSM723282)
other. (brain)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		mjTestesWT3()
Testes Data. (testes)
...............................................................................................................................AGCAGGGCATGGAAGTACGAATGG...................................................................................................2417.007.00-1.00--2.00-------------------1.00--1.00--1.00-------1.00----
...................................................................................................................................................................................CTGTCTTTCCATTCCCTGCAGT.................................................2217.004.00---2.00------1.001.00---------1.00---------------1.00-1.00---
....................................................................................................................................................................................TGTCTTTCCATTCCCTGCAGT.................................................215.000.004.00----1.00-------------------------------------
...................................................................................................................................................................................CTGTCTTTCCATTCCCTGCAG..................................................2114.004.00---1.00--1.00------------------------1.00----1.00------
...............................................................................................................................AGCAGGGCATGGAAGTACGAATGGG..................................................................................................2513.003.00-1.00--1.00-1.00------------------------------------
......................................................GAAACTGAGCTCTGGAAGGGCT..............................................................................................................................................................................2213.003.00--2.00-----1.00----------------------------------
...............................................................................................................................AGCAGGGCATGGAAGTACGAATG....................................................................................................2313.003.00-------------------1.00---1.00----1.00--------------
...............................................................................................................................AGCAGGGCATGGAAGTACGAATGT...................................................................................................2412.003.00-1.00--------------------------------1.00--------
...................................................................................................................................................................................CTGTCTTTCCATTCCCTGCAGTA................................................2312.004.00------------1.00-------------1.00----------------
...............................................................................................................................AGCAGGGCATGGAAGTACGA.......................................................................................................2012.002.00----------1.00--1.00-----------------------------
...............................................................................................................................AGCAGGGCATGGAAGTACGAAT.....................................................................................................2211.001.00-------------------------1.00-----------------
..........................................................................................................................................................................TAACCCTGCCTGTCTTTCCATTCCC.......................................................2511.001.00---------1.00---------------------------------
........................................................................................................................................................................................................CAGAGAGAGCCCTCGTCAAGGCTTC.........................2511.001.00------------1.00------------------------------
.....................................................................................................................................................................................................................CGTCAAGGCTTCGGTCCTGCAGT..............2311.001.00--------1.00----------------------------------
..............................................................................................................................GAGCAGGGCATGGAAGTACGAATGGGGT................................................................................................281.000.00-----------1.00-------------------------------
...............................................................................................................................AGCAGGGCATGGAAGTACGAATT....................................................................................................2311.001.00---------------1.00---------------------------
......................................................................................................................ATGTCAGAGAGCAGGGCAG.................................................................................................................191.000.00-------1.00-----------------------------------
..........................................................................................................................................................................TAACCCTGCCTGTCTTTCCATTC.........................................................2311.001.00-----1.00-------------------------------------
...............................................................................................................................AGCAGGGCATGGAAGTACGAATGGGTTCTGAGAACACTCCTGCTAACCCTGCCTGTCTTTCCATTCCCTGCAG..................................................7311.001.00--------------------------------1.00----------
..................................................................................................................................................................................CCTGTCTTTCCATTCCCTGCAGT.................................................231.000.00---------1.00---------------------------------
..............................................................................................................................GAGCAGGGCATGGAAGTACGA.......................................................................................................2111.001.00-----------------------------------1.00-------
.....................................................................................................................................................................................GTCTTTCCATTCCCTGCAG..................................................1911.001.00-----------------1.00-------------------------
.........................................................................................................................................................................................................................AAGGCTTCGGTCCTGTCC...............181.000.00-------1.00-----------------------------------
...............................................................................................................................AGCAGGGCATGGAAGTACGAATGGGA.................................................................................................2611.003.00----------------------1.00--------------------
.........................................................................................................................................................................................................AGAGAGAGCCCTCGTCAAGGCTT..........................2311.001.00--1.00----------------------------------------
...................................................................................................................................................................................CTGTCTTTCCATTCCCTGCAGTAG...............................................2411.004.00--------------1.00----------------------------
......................................................................................................................................CATGGAAGTACGAATGGGTTCTGAGA..........................................................................................2611.001.00-----------------------------1.00-------------
...................................................GTTGAAACTGAGCTC........................................................................................................................................................................................1550.200.20-----------------------------------------0.20-

Antisense strand
AGTCTTGGCCTCCTTTTACCTATAAATCCTGGTTGCCGGAGGACACTAAGAGTTGAAACTGAGCTCTGGAAGGGCTACGGTCACTGCTGGGAAACAGGTGGTGTTCGATTGCCTCCTGATGTCAGAGAGCAGGGCATGGAAGTACGAATGGGTTCTGAGAACACTCCTGCTAACCCTGCCTGTCTTTCCATTCCCTGCAGCAGAGAGAGCCCTCGTCAAGGCTTCGGTCCTGCAGTGTTACCGACACGGT
................................................................................................................................((((((.(((((((.(((...(((((..(((....))).....)))))....))).))))))).))))))....................................................
..........................................................................................................................123..........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR206939(GSM723280)
other. (brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR073954(GSM629280)
total RNA. (blood)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		SRR206941(GSM723282)
other. (brain)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		mjTestesWT3()
Testes Data. (testes)
................................................................................................................................................................................TGCCTGTCTTTCCATTCCC....................................................... 1911.001.00--------------------1.00----------------------
............................................................................................................................................................................................................GAGAGCCCTCGTCAAAA............................. 171.000.00----------------1.00--------------------------
............................................................GAGCTCTGGAAGGGCGGCT........................................................................................................................................................................... 191.000.00---------------------------------1.00---------
.....................................................................................................................................................................................GTCTTTCCATTCCCTGTG................................................... 181.000.00------------------1.00------------------------
...............................................................................................................CCTCCTGATGTCAGATTAG........................................................................................................................ 190.430.00----------------------------------------0.43--
...............................................................................................................CCTCCTGATGTCAGA............................................................................................................................ 1570.140.14------------------------------------------0.14