ID: uc008edx.10
GENE: Cdh2(10)
chr18:16802534-16802783-


(1)
AGO.mut 		(5)
AGO2.ip 		(23)
BRAIN 		(3)
CELL-LINE 		(3)
DCR.mut 		(2)
DGCR8.mut 		(8)
EMBRYO 		(3)
ESC 		(2)
FIBROBLAST 		(3)
LIVER 		(1)
OTHER 		(2)
OTHER.mut 		(1)
TESTES 		(2)
TOTAL-RNA

Sense strand
CAGTGAGCCCTAGGCCTGGCCTAGAGGGAAGGTGGCTTCCTGTACGACATCTCTCCTCAGAGCTGGGCTACCTCCGTCTAGGGCAGGGAAGGGTAGCAGCTTTGGCATGACTGTCCTCAGGATGCTCTGGCTACTGTGGACGCGTGGTAACCACAGGTGACAGATCTTCAAGTGCCTCTGCCCTCTGGTTGCTTTTGCAGTTGAGAGCACATGCAGTGGACATCAATGGCAATCAAGTGGAGAACCCCAT
.............................................................................................................................................(((.((((((((.(((...((((............)))).))).))))))))..)))....................................................
.......................................................................................................................................136.............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR206940(GSM723281)
other. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		GSM361408(GSM361408)
WholeCerebellum_P6_wt_rep1. (brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		GSM361398(GSM361398)
CGNP_P6_p53--_Ink4c--_rep1. (brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM361407(GSM361407)
CGNP_P6_Ptc+-_Ink4c--_rep5. (brain)		GSM361430(GSM361430)
WholeCerebellum_1month_Ptc+-_Ink4c--_rep2. (brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR060845(GSM561991)
total RNA. (brain)		SRR206941(GSM723282)
other. (brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		GSM361415(GSM361415)
WholeCerebellum_P6_p53--_Ink4c--_rep4. (brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)
..................................................................................................................................................................................TGCCCTCTGGTTGCTTTTGCAGT.................................................23121.0021.003.00-------1.00-2.00--1.001.00-1.00--1.00---1.00--1.00----1.00--1.001.001.00--1.00-1.001.001.001.00-
..................................................................................................................................................................................TGCCCTCTGGTTGCTTTTGCAG..................................................22110.0010.00--1.005.00----1.00------1.001.00--------1.00--------------------
..........................................................................................................................................................................................................GAGAGCACATGCAGTGGAC.............................1915.005.001.004.00--------------------------------------------
..................................................................................................................................................................................................................ATGCAGTGGACATCAATGG.....................1915.005.00----5.00-----------------------------------------
............................................................................................................................................CGCGTGGTAACCACAGGTGACAGA......................................................................................2414.004.001.001.001.00-----1.00-------------------------------------
......................................................................................................................................................................................................................AGTGGACATCAATGGCA...................1723.503.50-------3.50--------------------------------------
...........................................ACGACATCTCTCCTCAGAGCT..........................................................................................................................................................................................2113.003.00-1.002.00-------------------------------------------
..........................................................................................................ATGACTGTCCTCAGGAGATT............................................................................................................................203.000.00------3.00---------------------------------------
.........................................................................................................................................................................................................................GGACATCAATGGCAATCAAGT............2113.003.002.00-1.00-------------------------------------------
......................................................................................................................................................................................................................AGTGGACATCAATGGCAATCAAGT............2413.003.00-1.00---2.00----------------------------------------
.............................................................................................................................................................................................................AGCACATGCAGTGGACACC..........................192.000.00------------2.00---------------------------------
..........................................................................................................................................................................................................GAGAGCACATGCAGTGGACAT...........................2112.002.002.00---------------------------------------------
.................................................................................................................................................................................................................................ATGGCAATCAAGTGGAGAACCCCA.2412.002.00-1.001.00-------------------------------------------
..........................................................................................................................................................................................................GAGAGCACATGCAGTGGACATC..........................2212.002.00-1.00---------1.00----------------------------------
.............................................................................................................................................GCGTGGTAACCACAGGTGACAGA......................................................................................2312.002.002.00---------------------------------------------
...........................................................................................................................................ACGCGTGGTAACCACAGGTGAC.........................................................................................2212.002.001.00-----------------1.00---------------------------
.........................................................................................................................................................................................................TGAGAGCACATGCAGTGGACATCAAT.......................2612.002.002.00---------------------------------------------
...........................................ACGACATCTCTCCTCAGAGCTGG........................................................................................................................................................................................2312.002.00--2.00-------------------------------------------
..................................................................................................................................................................................................................................TGGCAATCAAGTGGAGAACCCC..2211.001.00---------------------------1.00------------------
........................................................................................................................................................................................................TTGAGAGCACATGCAGTGGACAT...........................2311.001.00------1.00---------------------------------------
...........................................................................................................................................ACGCGTGGTAACCACAGGTGACAGA......................................................................................2511.001.001.00---------------------------------------------
.........................................................................................................................................GGACGCGTGGTAACCACAGGTGACAGATC....................................................................................2911.001.00----------------------------------------1.00-----
..................................................................................................................................................................................TGCCCTCTGGTTGCTTTTGCAGTA................................................2411.0021.00--1.00-------------------------------------------
.........................................................................................................................ATGCTCTGGCTACTGTGGACGCGTGGTAACCACAGGTGACAGATCTTCAAGTGCCTCTGCCCTCTGGTTGCTTTTGCAG..................................................7911.001.00-------------------------------------1.00--------
.......................................................................................................................GGATGCTCTGGCTACTGTGGACGCGT.........................................................................................................2611.001.00---------------1.00------------------------------
...................................................................................................................................................................................................................................GGCAATCAAGTGGAGAACCCCA.2211.001.00-----1.00----------------------------------------
.......................................................................................................................................................................................................................GTGGACATCAATGGCAATCAAGTGGAGAA......2911.001.00------------------------------1.00---------------
.......................................................................................................................................................................................................................GTGGACATCAATGGCAAT.................1811.001.00--------------1.00-------------------------------
...................................................................................................................................................................................................................................GGCAATCAAGTGGAGAACCCC..2111.001.00-----1.00----------------------------------------
..................................................................................................................................................................................TGCCCTCTGGTTGCTTTTGCA...................................................2111.001.00-------------1.00--------------------------------
.............................................................................................................................................GCGTGGTAACCACAGGTGACAG.......................................................................................2211.001.00---------------------1.00------------------------
................................................................................................................................................................................................................................AATGGCAATCAAGTGGAGAACCCC..2411.001.00-1.00--------------------------------------------
.........................................................................................................................................................................................................................GGACATCAATGGCAATCAAG.............2011.001.00--1.00-------------------------------------------
.....................................................................................GGGAAGGGTAGCAGCTTTGGCATGAC...........................................................................................................................................2611.001.00---------------------------------------------1.00
..........................................................................................................................................................................................................GAGAGCACATGCAGTGGACATCAA........................2411.001.001.00---------------------------------------------
...............................................................................................................................................................................................................................CAATGGCAATCAAGTGGAGAACCCC..2511.001.001.00---------------------------------------------
...........................................................................................................................................ACGCGTGGTAACCACAGGTGACAG.......................................................................................2411.001.00-1.00--------------------------------------------
.........................................................................................................................................................................................................TGAGAGCACATGCAGTGGACATCAA........................2511.001.00-----------1.00----------------------------------
........................................................................................................................................................................................................................TGGACATCAATGGCAATCA...............1911.001.00--1.00-------------------------------------------

Antisense strand
CAGTGAGCCCTAGGCCTGGCCTAGAGGGAAGGTGGCTTCCTGTACGACATCTCTCCTCAGAGCTGGGCTACCTCCGTCTAGGGCAGGGAAGGGTAGCAGCTTTGGCATGACTGTCCTCAGGATGCTCTGGCTACTGTGGACGCGTGGTAACCACAGGTGACAGATCTTCAAGTGCCTCTGCCCTCTGGTTGCTTTTGCAGTTGAGAGCACATGCAGTGGACATCAATGGCAATCAAGTGGAGAACCCCAT
.............................................................................................................................................(((.((((((((.(((...((((............)))).))).))))))))..)))....................................................
.......................................................................................................................................136.............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR206940(GSM723281)
other. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		GSM361408(GSM361408)
WholeCerebellum_P6_wt_rep1. (brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		GSM361398(GSM361398)
CGNP_P6_p53--_Ink4c--_rep1. (brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM361407(GSM361407)
CGNP_P6_Ptc+-_Ink4c--_rep5. (brain)		GSM361430(GSM361430)
WholeCerebellum_1month_Ptc+-_Ink4c--_rep2. (brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR060845(GSM561991)
total RNA. (brain)		SRR206941(GSM723282)
other. (brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		GSM361415(GSM361415)
WholeCerebellum_P6_p53--_Ink4c--_rep4. (brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)
..................................................................................................................................................................................TGCCCTCTGGTTGCTTTTGCAGT................................................. 2313.003.00-----------------2.00-----------1.00----------------
..................................................................................................................................................................................TGCCCTCTGGTTGCTTTTGCAG.................................................. 2212.002.00----------------------------1.00---------1.00-------
..................................................................................................................................................................................TGCCCTCTGGTTGCTTTG...................................................... 181.000.00---------1.00------------------------------------
.....................................................TCCTCAGAGCTGGGCTTTT.................................................................................................................................................................................. 191.000.00---------------------------------1.00------------
............................................................................................................................................CGCGTGGTAACCACAGGTGACAGAT..................................................................................... 2511.001.00------------------------1.00---------------------
..........................................................................................................................................................................AGTGCCTCTGCCCTCGCT.............................................................. 181.000.00--------------------1.00-------------------------
........................................................................................................................GATGCTCTGGCTACTTCC................................................................................................................ 181.000.00--------------------------------1.00-------------
.................................GGCTTCCTGTACGACGGTA...................................................................................................................................................................................................... 191.000.00---------1.00------------------------------------
...........................................................................................................................................................................GTGCCTCTGCCCTCTGGTGGT.......................................................... 211.000.00----------------------1.00-----------------------