ID: uc008cds.0
GENE: Skiv2l(27)
chr17:34976501-34976685-


(2)
AGO2.ip 		(1)
AGO3.ip 		(10)
B-CELL 		(10)
BRAIN 		(13)
CELL-LINE 		(14)
EMBRYO 		(9)
ESC 		(2)
FIBROBLAST 		(1)
KIDNEY 		(2)
LIVER 		(3)
LYMPH 		(12)
OTHER 		(1)
OTHER.ip 		(6)
OTHER.mut 		(5)
PIWI.ip 		(1)
PIWI.mut 		(2)
SKIN 		(5)
SPLEEN 		(1)
TDRD1.ip 		(28)
TESTES 		(4)
THYMUS 		(1)
TOTAL-RNA 		(1)
UTERUS

Sense strand
AGCTGAATTTTGGGCTGGTAGAGGTTGTGTATGAGTGGGCTAGGGGTATGGTAAGTGCCGGGTTTGGCAGTTGGCTGGTTGGGAGAAGCCATGCAAGACCTGGCACATTTAGTCTTCACTCTGCTCTTCCCATAGCCCTTCTCCGAGTTGGCAGGGCTCTCAGGGACCCCTGAGGGCTTGGTCGT
......................................................(((((((((((.(((..(((((..........)))))))).)))))))))))...............................................................................
..................................................51.............................................................114.....................................................................
SizePerfect hitTotal NormPerfect NormSRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjTestesWT4()
Testes Data. (testes)		SRR073954(GSM629280)
total RNA. (blood)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		mjTestesWT1()
Testes Data. (testes)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR069834(GSM304914)
Analysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzer. (blood)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		GSM475281(GSM475281)
total RNA. (testes)		SRR553586(SRX182792)
source: Testis. (testes)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		mjTestesWT2()
Testes Data. (testes)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR073955(GSM629281)
total RNA. (blood)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		RuiDcrWT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		GSM416732(GSM416732)
MEF. (cell line)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR037930(GSM510468)
e7p5_rep4. (embryo)
...................................TGGGCTAGGGGTATGATTC...................................................................................................................................19618.333.50---0.170.33-2.50--0.17------0.17--0.50--------1.83--1.832.00-----1.67--0.171.00-0.17----------------------------------------0.670.500.670.170.33-0.170.50-0.170.500.500.170.17---0.17-0.17-0.170.170.17-0.17-0.170.17---
........................................................................................CCATGCAAGACCTGGCACATTT...........................................................................22115.0015.00----1.00--1.00--1.00-----2.00-------1.00----2.00-----2.00---1.00--------1.00----1.00--1.00---------------------------1.00--------------------------------
....GAATTTTGGGCTGGTAGAGGTT...............................................................................................................................................................22114.0014.004.00-3.004.00-----1.00------1.00------1.00---------------------------------------------------------------------------------------------
..........................................................................................ATGCAAGACCTGGCACATTTAGT........................................................................23113.0013.001.00---4.00-----------------------------2.00--2.00-----1.00------1.00--------------------1.00-----1.00---------------------------------------
..................................................GTAAGTGCCGGGTTTGGCAGTTGGCTGGTTGGGAGAAGCCATGCAAGACCTGGCACATTTAGTCTTCACTCTGCTCTTCCCATAG..................................................8519.009.00-9.00-------------------------------------------------------------------------------------------------------------------
..........................GTGTATGAGTGGGCTAGGGG...........................................................................................................................................2019.009.00-----9.00---------------------------------------------------------------------------------------------------------------
....GAATTTTGGGCTGGTAGAGGTTGT.............................................................................................................................................................2418.008.002.00-1.00----1.001.00-----------1.00--1.00--------------------------------------------------1.00------------------------------------------
..........TGGGCTGGTAGAGGTTGT.............................................................................................................................................................1815.005.00---1.001.00----------------1.00--2.00--------------------------------------------------------------------------------------------
.........TTGGGCTGGTAGAGGTTGTGT...........................................................................................................................................................2115.005.001.00-2.002.00-----------------------------------------------------------------------------------------------------------------
..................................................GTAAGTGCCGGGTTTGGCAGTTGGCTGGTTGGGAGAAGCCATGCAAGACCTGGCACATTTAGTCTTCACTCTGCTCTTCCCATA...................................................8415.005.00-5.00-------------------------------------------------------------------------------------------------------------------
.........................................................................................CATGCAAGACCTGGCACATTT...........................................................................2114.004.00-------------------------3.00---------------------------------------------------------1.00---------------------------------
........................................................................................CCATGCAAGACCTGGCACATT............................................................................2114.004.00----------4.00----------------------------------------------------------------------------------------------------------
...................................TGGGCTAGGGGTATGATT....................................................................................................................................1863.503.50------0.50------------0.17--------0.33--0.17-------0.50-0.170.17---------------------------------------------0.17-0.50-------0.170.17---0.17-0.17--------0.17--
...................................TGGGCTAGGGGTATG.......................................................................................................................................1563.503.50--------------------------1.830.17------------1.00--0.17---------------------------------------------------------0.17-------0.17-------
...................AGAGGTTGTGTATGAGTGGGCT................................................................................................................................................2213.003.00--1.001.00----1.00------------------------------------------------------------------------------------------------------------
.............GCTGGTAGAGGTTGTGTATGAGTGG...................................................................................................................................................2513.003.00-----------1.00--1.00---------------------------------------1.00--------------------------------------------------------------
..........TGGGCTGGTAGAGGTTGTGTATGAG......................................................................................................................................................2513.003.00---------------------------1.00--------1.00----------------------1.00---------------------------------------------------------
....GAATTTTGGGCTGGTAGAGGT................................................................................................................................................................2113.003.001.00-1.001.00-----------------------------------------------------------------------------------------------------------------
........TTTGGGCTGGTAGAGGTTGT.............................................................................................................................................................2013.003.001.00--1.00-------------------1.00---------------------------------------------------------------------------------------------
...................................TGGGCTAGGGGTATGAT.....................................................................................................................................1762.503.50------1.83------------0.17-----------------------------------------------------------------------0.33-----------------------0.17-
...............TGGTAGAGGTTGTGTATGAGTGGGC.................................................................................................................................................2512.002.00------------------------------------1.00-----------------------------------1.00--------------------------------------------
........................................................................................CCATGCAAGACCTGGCACATTTAG.........................................................................2412.002.00----1.00--1.00-------------------------------------------------------------------------------------------------------------
.........................................................................................CATGCAAGACCTGGCACATTTAGT........................................................................2412.002.00----------------------1.00-------1.00--------------------------------------------------------------------------------------
.........................................................................................CATGCAAGACCTGGCACATTTA..........................................................................2212.002.00-------------1.00---------------------------------------------------1.00---------------------------------------------------
...................................................TAAGTGCCGGGTTTGGCAGTTGGC..............................................................................................................2412.002.00---------------2.00-----------------------------------------------------------------------------------------------------
...TGAATTTTGGGCTGGTAGAGGTTGT.............................................................................................................................................................2512.002.00-----------1.00---------------------1.00-----------------------------------------------------------------------------------
.........................................................................................CATGCAAGACCTGGCACATTTAG.........................................................................2312.002.00---------------------------------------------1.00-----------------------------------1.00-----------------------------------
.............................................................................................................................................TCCGAGTTGGCAGGGCTCTCAGGGA...................2512.002.00-----------1.00---------------------1.00-----------------------------------------------------------------------------------
........................................................................................CCATGCAAGACCTGGCACAT.............................................................................2012.002.00-------------1.00--------1.00----------------------------------------------------------------------------------------------
...........GGGCTGGTAGAGGTTGTGT...........................................................................................................................................................1912.002.001.00-------1.00------------------------------------------------------------------------------------------------------------
....GAATTTTGGGCTGGTAGAGGTTG..............................................................................................................................................................2312.002.00--------2.00------------------------------------------------------------------------------------------------------------
...................................................TAAGTGCCGGGTTTGGCAGTTGG...............................................................................................................2312.002.00---------------1.00------------------------------------------1.00----------------------------------------------------------
...............TGGTAGAGGTTGTGTATGAGTGGGCT................................................................................................................................................2612.002.00-----------1.00--1.00------------------------------------------------------------------------------------------------------
........TTTGGGCTGGTAGAGGTTGTGT...........................................................................................................................................................2212.002.00--1.00--------------1.00---------------------------------------------------------------------------------------------------
..........................................................................................ATGCAAGACCTGGCACATTTAGTCA......................................................................2512.001.00----2.00----------------------------------------------------------------------------------------------------------------
...................................TGGGCTAGGGGTATGA......................................................................................................................................1661.833.50--------------------0.17-----0.83-------------0.50------------------------------------------------------------0.17---------0.17-----
.................................AGTGGGCTAGGGGTATG.......................................................................................................................................1741.501.50------0.25--------0.25-----------0.25------------------------------------------------------------0.25----0.50-----------------------
......ATTTTGGGCTGGTAGAGGTTGTGT...........................................................................................................................................................2411.001.00---1.00-----------------------------------------------------------------------------------------------------------------
........................................................................................CCATGCAAGACCTGGCACATAT...........................................................................2211.002.00---------------------------------------------------1.00-----------------------------------------------------------------
...................................TGGGCTAGGGGTATGGTTC...................................................................................................................................191.000.00--------------------------------------------1.00------------------------------------------------------------------------
..........................................................CGGGTTTGGCAGTT.................................................................................................................1411.001.00----------------------------------------------------1.00----------------------------------------------------------------
........TTTGGGCTGGTAGAGGTTG..............................................................................................................................................................1911.001.00--1.00------------------------------------------------------------------------------------------------------------------
..............................ATGAGTGGGCTAGGGGTAT........................................................................................................................................1911.001.00---------1.00-----------------------------------------------------------------------------------------------------------
.........TTGGGCTGGTAGAGGTTGT.............................................................................................................................................................1911.001.00---------1.00-----------------------------------------------------------------------------------------------------------
..............................ATGAGTGGGCTAGGGGTATGCT.....................................................................................................................................221.000.00------------------------------1.00--------------------------------------------------------------------------------------
...TGAATTTTGGGCTGGTAGAGGTTGTG............................................................................................................................................................2611.001.00---------------------------------------------------------1.00-----------------------------------------------------------
..........................................................................................................................................TTCTCCGAGTTGGCAGGGCTCTCAGGGA...................2811.001.00--------------------1.00------------------------------------------------------------------------------------------------
...............TGGTAGAGGTTGTGTATGA.......................................................................................................................................................1911.001.00------------------1.00--------------------------------------------------------------------------------------------------
......................................................................................................GCACATTTAGTCTTCACTCTGCTCTTC........................................................2711.001.00--------------------------------------------------------------------------------1.00------------------------------------
.........TTGGGCTGGTAGAGGTTGTGTAT.........................................................................................................................................................2311.001.001.00--------------------------------------------------------------------------------------------------------------------
.GCTGAATTTTGGGCTGGTAGAGGTTG..............................................................................................................................................................2611.001.00--------------------1.00------------------------------------------------------------------------------------------------
..........TGGGCTGGTAGAGGTTGTG............................................................................................................................................................1911.001.00-------------------------------------------------1.00-------------------------------------------------------------------
......ATTTTGGGCTGGTAGAGGTTGTGTATG........................................................................................................................................................2711.001.00--------------1.00------------------------------------------------------------------------------------------------------
.....................AGGTTGTGTATGAGTGGGCTAGGGG...........................................................................................................................................2511.001.00----------------------------------------------1.00----------------------------------------------------------------------
........................................................................................CCATGCAAGACCTGGCACATTAT..........................................................................2311.004.00-------1.00-------------------------------------------------------------------------------------------------------------
..............................ATGAGTGGGCTAGGGGT..........................................................................................................................................1721.001.000.50--0.50-----------------------------------------------------------------------------------------------------------------
........TTTGGGCTGGTAGAGGTT...............................................................................................................................................................1811.001.00---------1.00-----------------------------------------------------------------------------------------------------------
...........................................................................................................................................TCTCCGAGTTGGCAGGGCTCTCAGG.....................2511.001.00---------------------1.00-----------------------------------------------------------------------------------------------
..............................ATGAGTGGGCTAGGGGTATGC......................................................................................................................................211.000.00-----------------1.00---------------------------------------------------------------------------------------------------
...................................TGGGCTAGGGGTATGGTT....................................................................................................................................181.000.00----------------------------------------------------------------------------------1.00----------------------------------
........................................................................................CCATGCAAGACCTGGCACATATA..........................................................................2311.002.00-------1.00-------------------------------------------------------------------------------------------------------------
..........TGGGCTGGTAGAGGTTGTGTATGAGTGGGC.................................................................................................................................................3011.001.00-------------------------------------------------------------------------1.00-------------------------------------------
..................TAGAGGTTGTGTATGAGTGGGCTA...............................................................................................................................................2411.001.00-----------------1.00---------------------------------------------------------------------------------------------------
........................................................................................CCATGCAAGACCTGGCACATTG...........................................................................2211.004.00----------------------1.00----------------------------------------------------------------------------------------------
.........TTGGGCTGGTAGAGGTTGTGTATG........................................................................................................................................................2411.001.00------------------1.00--------------------------------------------------------------------------------------------------
..................................................GTAAGTGCCGGGTTTGGCA....................................................................................................................1911.001.00-----------------------------------------------1.00---------------------------------------------------------------------
...................................................TAAGTGCCGGGTTTGGCAGTTTGCT.............................................................................................................251.000.00------------------1.00--------------------------------------------------------------------------------------------------
.......TTTTGGGCTGGTAGAGGTT...............................................................................................................................................................1911.001.00-----------------1.00---------------------------------------------------------------------------------------------------
.....................................................................GTTGGCTGGTTGGGAGGGG.................................................................................................191.000.00-------------1.00-------------------------------------------------------------------------------------------------------
...........................................................................................................................................TCTCCGAGTTGGCAGGGCTCTCAGGGA...................2711.001.00---------------------1.00-----------------------------------------------------------------------------------------------
......................GGTTGTGTATGAGTGGGCTAGGGGTA.........................................................................................................................................2611.001.00--------------1.00------------------------------------------------------------------------------------------------------
..................................................GTAAGTGCCGGGTTTGGCAGTTGGCT.............................................................................................................2611.001.00-------------------1.00-------------------------------------------------------------------------------------------------
.....AATTTTGGGCTGGTAGA...................................................................................................................................................................1711.001.00--1.00------------------------------------------------------------------------------------------------------------------
...................................................................CAGTTGGCTGGTTGGGAGAAGCCATGCAAGACC.....................................................................................3311.001.00-------------------------------------------------------1.00-------------------------------------------------------------
..................TAGAGGTTGTGTATGAGTGGGCTAG..............................................................................................................................................2511.001.00-----------1.00---------------------------------------------------------------------------------------------------------
..CTGAATTTTGGGCTGGTAGAGGTT...............................................................................................................................................................2411.001.00--------------------------------------------------------------------1.00------------------------------------------------
..........TGGGCTGGTAGAGGTTGTGTATGAGT.....................................................................................................................................................2611.001.00----------------------------------------------------------------------1.00----------------------------------------------
..........TGGGCTGGTAGAGGTT...............................................................................................................................................................1611.001.001.00--------------------------------------------------------------------------------------------------------------------
.........................................................................................CATGCAAGACCTGGCACATTAA..........................................................................221.000.00----------------------------------------------------------------------------1.00----------------------------------------
....................................................................................................................................................TGGCAGGGCTCTCAGGGACCCCTGA............2511.001.00--------1.00------------------------------------------------------------------------------------------------------------
...........................................................................................................................................TCTCCGAGTTGGCAGGGCTCTCAG......................2411.001.00------------------1.00--------------------------------------------------------------------------------------------------
............................GTATGAGTGGGCTAGGGGT..........................................................................................................................................1911.001.00----------------1.00----------------------------------------------------------------------------------------------------
.....................AGGTTGTGTATGAGTGGGCTA...............................................................................................................................................2111.001.00------------------------------------------------------------------1.00--------------------------------------------------
..................................................GTAAGTGCCGGGTTTGGCAGTTGG...............................................................................................................2411.001.00-------------------------------------------------------------1.00-------------------------------------------------------
........................................................................................CCATGCAAGACCTGGCACATTTA..........................................................................2311.001.00-------1.00-------------------------------------------------------------------------------------------------------------
.................................................................................................................................................AGTTGGCAGGGCTCTCAT......................181.000.00-------------------1.00-------------------------------------------------------------------------------------------------
..........................................................................................ATGCAAGACCTGGCACATTTATT........................................................................231.000.00---------------------------------------------------------------------1.00-----------------------------------------------
....................................................AAGTGCCGGGTTTGGCAGTTGGC..............................................................................................................2311.001.00-------------------------------------------------------------------------------1.00-------------------------------------
...........................................................................TGGTTGGGAGAAGCCATGCAAG........................................................................................2211.001.00--1.00------------------------------------------------------------------------------------------------------------------
..........................................................................................ATGCAAGACCTGGCACATTTAGTC.......................................................................2411.001.00---------1.00-----------------------------------------------------------------------------------------------------------
...................................................TAAGTGCCGGGTTTGGCAGTTGGCTA............................................................................................................261.000.00---------------1.00-----------------------------------------------------------------------------------------------------
.........................................................................................CATGCAAGACCTGGCACATTTAT.........................................................................2311.002.00-----------------------------------------1.00---------------------------------------------------------------------------
......ATTTTGGGCTGGTAGAGGTTGTGTAT.........................................................................................................................................................2611.001.00------------------------------------------------------------------------------1.00--------------------------------------
.........................................................................................................................................................GGGCTCTCAGGGACCCCTGAGGGCTTG.....2711.001.00---------------------------1.00-----------------------------------------------------------------------------------------
...TGAATTTTGGGCTGGTAGAGGTTGTGTATG........................................................................................................................................................3011.001.00---------------------------------------------------------------1.00-----------------------------------------------------
..........................................................................................ATGCAAGACCTGGCACATTTAGA........................................................................231.000.00---------------------------------------------------------------------------1.00-----------------------------------------
.GCTGAATTTTGGGCTGGTAGAGGTT...............................................................................................................................................................2511.001.00-------------------------------------------------------------------1.00-------------------------------------------------
...........GGGCTGGTAGAGGTTG..............................................................................................................................................................1620.500.500.50--------------------------------------------------------------------------------------------------------------------
...........GGGCTGGTAGAGGTTGT.............................................................................................................................................................1720.500.50---------0.50-----------------------------------------------------------------------------------------------------------
...................................TGGGCTAGGGGTATGATTG...................................................................................................................................1960.333.50-------------------------------------------------------------------------------------------------0.17-0.17-----------------
...................................TGGGCTAGGGGTATGTTTC...................................................................................................................................1960.333.50--------------------------------------------------------------------------------------0.17-----------------------------0.17
......................................................................................................................................................GCAGGGCTCTCAGGGACC.................1830.330.33----------------------------------------------------------------------------------------------------0.33----------------
...................................TGGGCTAGGGGTATGAATC...................................................................................................................................1960.333.50------0.17---------------------0.17----------------------------------------------------------------------------------------
...................................TGGGCTAGGGGTATGAA.....................................................................................................................................1760.333.50------0.33--------------------------------------------------------------------------------------------------------------
...................................TGGGCTAGGGGTATGTT.....................................................................................................................................1760.173.50----------------------------------------------------------------------------------------------0.17----------------------
...................................TGGGCTAGGGGTATGAGTC...................................................................................................................................1960.173.50----------------------------------------------------------------------------------------------0.17----------------------
...................................TGGGCTAGGGGTATGATG....................................................................................................................................1860.173.50-----------------------------------------------------------------------------------------0.17---------------------------

Antisense strand
AGCTGAATTTTGGGCTGGTAGAGGTTGTGTATGAGTGGGCTAGGGGTATGGTAAGTGCCGGGTTTGGCAGTTGGCTGGTTGGGAGAAGCCATGCAAGACCTGGCACATTTAGTCTTCACTCTGCTCTTCCCATAGCCCTTCTCCGAGTTGGCAGGGCTCTCAGGGACCCCTGAGGGCTTGGTCGT
......................................................(((((((((((.(((..(((((..........)))))))).)))))))))))...............................................................................
..................................................51.............................................................114.....................................................................
SizePerfect hitTotal NormPerfect NormSRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjTestesWT4()
Testes Data. (testes)		SRR073954(GSM629280)
total RNA. (blood)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		mjTestesWT1()
Testes Data. (testes)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR069834(GSM304914)
Analysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzer. (blood)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		GSM475281(GSM475281)
total RNA. (testes)		SRR553586(SRX182792)
source: Testis. (testes)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		mjTestesWT2()
Testes Data. (testes)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR073955(GSM629281)
total RNA. (blood)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		RuiDcrWT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		GSM416732(GSM416732)
MEF. (cell line)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR037930(GSM510468)
e7p5_rep4. (embryo)
............................................................................................................................................................CTCTCAGGGACCCCTGAGGGCTT...... 2311.001.00-------------------1.00-------------------------------------------------------------------------------------------------
.GCTGAATTTTGGGCTGGTA..................................................................................................................................................................... 191.000.00----------------------------------------------------------------1.00----------------------------------------------------
..................................................................................................................................................................GGGACCCCTGAGGGCTAA..... 181.000.00------1.00--------------------------------------------------------------------------------------------------------------
................................................................................................................................CCCATAGCCCTTCTCCGAGTTGGCA................................ 2511.001.00--------------1.00------------------------------------------------------------------------------------------------------
............................................................................................................................TCTTCCCATAGCCCTTTTT.......................................... 191.000.00-------------1.00-------------------------------------------------------------------------------------------------------
............................................................................................................................TCTTCCCATAGCCCTTTT........................................... 181.000.00-------------1.00-------------------------------------------------------------------------------------------------------
............................................................................................................................TCTTCCCATAGCCCTTTC........................................... 181.000.00------------------------------------------------------------1.00--------------------------------------------------------