ID: uc007ybt.15
GENE: Ppl(15)
chr16:5105069-5105318-


(1)
AGO.mut 		(2)
AGO1.ip 		(1)
AGO2.ip 		(2)
AGO3.ip 		(4)
BRAIN 		(1)
DGCR8.mut 		(1)
EMBRYO 		(1)
ESC 		(1)
HEART 		(2)
LIVER 		(1)
LUNG 		(3)
OTHER 		(6)
SKIN 		(1)
TESTES 		(3)
TOTAL-RNA 		(1)
UTERUS

Sense strand
TTTCTTTGTTCACTGGTTTGTCCTCAGTGCCTAAAACCGTGCAACACATCTTCATGGTGCTCAATAAATGCCTGCAAGTAAATGTGTAGAGGATCAGCGACTGATCCAAGGACCTGGCTGGGAAGTAACAGAGTGGACACTGTGGGAGGCAGGCAGGGAAGCCAAGCCGATTCTGTCTTCACCTCGCTCTCATCCCACAGACAGCATCACAGGCACGGCAGCAGCACCTGAGCTCGCTGCAGGATTACAT
...........................................................................................................................................((((((((....((((((((((.((.........)).)))).))).)))....))))))))..................................................
.......................................................................................................................................136.............................................................200................................................
SizePerfect hitTotal NormPerfect NormAgo1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		RuiDGCR8WT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		mjTestesWT3()
Testes Data. (testes)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)
................................................................................................................................................................................CTTCACCTCGCTCTCATCCCACAGT.................................................25121.0015.007.002.002.003.004.00-2.00--1.00--------------
................................................................................................................................................................................CTTCACCTCGCTCTCATCCCACAG..................................................24115.0015.006.005.001.001.001.00--1.00----------------
................................................................................................................................................................................CTTCACCTCGCTCTCATCCCACA...................................................23112.0012.005.005.002.00---------------------
................................................................................................................................................................................CTTCACCTCGCTCTCATCCCAC....................................................2215.005.001.001.00-1.00---1.00---1.00------------
.................................................................................................................................................................................TTCACCTCGCTCTCATCCCACAG..................................................2315.005.00-2.001.002.00--------------------
.................................................................................................................................................................................TTCACCTCGCTCTCATCCCACAGT.................................................2414.005.00------1.00-----1.001.00-----1.00----
.................................................................................................................................................................................TTCACCTCGCTCTCATCCCACCGT.................................................243.000.001.00--2.00--------------------
.................................................................................................................................................................................TTCACCTCGCTCTCATCCCACCGA.................................................242.000.001.00-1.00---------------------
................................................................................................................................................................................CTTCACCTCGCTCTCATCCCACAGC.................................................2512.0015.00--------2.00---------------
............................................................................................................................................TGTGGGAGGCAGGCAGGGAAG.........................................................................................2112.002.00--1.00-----------1.00---------
............................................................................................................................................TGTGGGAGGCAGGCAGGGAAGT........................................................................................2212.002.00--2.00---------------------
................................................................................................................................................................................CTTCACCTCGCTCTCATCCCACAGA.................................................2512.002.00-1.001.00---------------------
....................................................................................................................GCTGGGAAGTAACAGAGTGGACACTGTGGGAGGCAGGCAGGGAAGCCAAGCCGATTCTGTCTTCACCTCGCTCTCATCCCACAG..................................................8412.002.00-----2.00------------------
................................................................................................................................................................................CTTCACCTCGCTCTCATCCCATA...................................................2312.001.00--2.00---------------------
............................................................................................................................................TGTGGGAGGCAGGCAGGGAAGCC.......................................................................................2311.001.00---------------1.00--------
............................................................................................................................................TGTGGGAGGCAGGCAGGGAAT.........................................................................................211.000.00---1.00--------------------
................................................................................................................................................................................CTTCACCTCGCTCTCATCCCACAA..................................................2411.0012.001.00-----------------------
..........................................................................................................................................................................................................................CAGCAGCACCTGAGCTCGGTT...........211.000.00----------------1.00-------
.............................................................................................................................................................................................................................CAGCACCTGAGCTCGCTGCAGGATT....2511.001.00--------------------1.00---
............................................................................................................................................TGTGGGAGGCAGGCAGGGAAGA........................................................................................2211.002.00--1.00---------------------
................................................................................................................................................................................CTTCACCTCGCTCTCATCCTACT...................................................231.000.001.00-----------------------
...................................................................................................................................................................................................................GGCACGGCAGCAGCACCTG....................1921.001.00-----1.00------------------
................................................................................................................................................................................CTTCACCTCGCTCTCATCCCACT...................................................2311.005.00--1.00---------------------
............................................................................................................................................TGTGGGAGGCAGGCAGGGAAGC........................................................................................2211.001.00-1.00----------------------
..........................................................................................................................................................................................................AGCATCACAGGCACGGCAGCAGCACCT.....................2711.001.00---------1.00--------------
.................................................................................................................................................................................TTCACCTCGCTCTCATCCCACA...................................................2211.001.00-1.00----------------------
................................................................................................................................................................................CTTCACCTCGCTCTCATCCCAAAG..................................................2411.001.001.00-----------------------
...............................................................................................................................................................................................................CACAGGCACGGCAGCAGCACCTGAGCTCG..............2911.001.00---------------------1.00--
.................................................................................................................................................................................TTCACCTCGCTCTCATCCCACCG..................................................231.000.00---1.00--------------------
................................................................................................................................................................................CTTCACCTCGCTCTCATCCCA.....................................................2111.001.00---1.00--------------------
..........................................................................................................................................................................................................................CAGCAGCACCTGAGCT................1650.200.20-----------------------0.20

Antisense strand
TTTCTTTGTTCACTGGTTTGTCCTCAGTGCCTAAAACCGTGCAACACATCTTCATGGTGCTCAATAAATGCCTGCAAGTAAATGTGTAGAGGATCAGCGACTGATCCAAGGACCTGGCTGGGAAGTAACAGAGTGGACACTGTGGGAGGCAGGCAGGGAAGCCAAGCCGATTCTGTCTTCACCTCGCTCTCATCCCACAGACAGCATCACAGGCACGGCAGCAGCACCTGAGCTCGCTGCAGGATTACAT
...........................................................................................................................................((((((((....((((((((((.((.........)).)))).))).)))....))))))))..................................................
.......................................................................................................................................136.............................................................200................................................
SizePerfect hitTotal NormPerfect NormAgo1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		RuiDGCR8WT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		mjTestesWT3()
Testes Data. (testes)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)
...............GTTTGTCCTCAGTGCAT.......................................................................................................................................................................................................................... 171.000.00-----------------1.00------
...............................................................................................................................................................................TCTTCACCTCGCTCTAGG......................................................... 181.000.00------------------1.00-----
................TTTGTCCTCAGTGCCTA......................................................................................................................................................................................................................... 171.000.00----------1.00-------------
..................................................................................................................................................................................................CCACAGACAGCATCACA....................................... 1720.500.50----------------------0.50-