ID: uc007xwc.10
GENE: Map3k12(5)
chr15:102334688-102334950-


(1)
AGO.mut 		(2)
AGO1.ip 		(24)
AGO2.ip 		(2)
AGO3.ip 		(3)
B-CELL 		(51)
BRAIN 		(7)
CELL-LINE 		(2)
DCR.mut 		(2)
DGCR8.mut 		(15)
EMBRYO 		(9)
ESC 		(7)
FIBROBLAST 		(2)
HEART 		(2)
KIDNEY 		(3)
LIVER 		(3)
LYMPH 		(10)
OTHER 		(6)
OTHER.mut 		(1)
PANCREAS 		(3)
PIWI.ip 		(8)
SKIN 		(3)
SPLEEN 		(12)
TESTES 		(2)
THYMUS 		(7)
TOTAL-RNA 		(1)
TRIM32.ip

Sense strand
GACATCAAGCATCTTCGAAAGCTGAAGCACCCCAACATCATCACTTTCAAGTGAGGTCCAGGGCAGGGGCTGGGGGTACCATGACACATAGGACTCCCCTCACCTGGGACTATATCCCCTTTCTCAAAGGAGACCCAGAAATGGCATGGGTAGAAATGTAGGTCCCAGGTACACAAGGCAGATAATTAAGCTTTACCCCTGTCTGGCCCTCAGGGGTGTTTGCACACAGGCCCCCTGCTACTGCATCCTTATGGAATTCTGCG
...................................................(((((.(((.((((((((..((((((.(((((...))).))))))))...((((((((((((((.(((..((((....)))).(((....)))...))).....)))))).))))))))....(((((..........))))).))))))))))).)))))...................................................
..................................................51................................................................................................................................................................213................................................
SizePerfect hitTotal NormPerfect NormSRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR206940(GSM723281)
other. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR206941(GSM723282)
other. (brain)		SRR206939(GSM723280)
other. (brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR206942(GSM723283)
other. (brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR306538(GSM750581)
19-24nt. (ago2 brain)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR037907(GSM510443)
brain_rep4. (brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR037904(GSM510440)
brain_rep1. (brain)		mjTestesWT1()
Testes Data. (testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR023848(GSM307157)
mEFsmallrna_rep1. (cell line)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR306528(GSM750571)
19-24nt. (ago2 brain)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		GSM317184(GSM317184)
TRIM32 IP small RNAs from mouse brain. (trim32 brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR037927(GSM510465)
e7p5_rep1. (embryo)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR037909(GSM510446)
newborn_rep2. (total RNA)		RuiDGCR8WT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		GSM317181(GSM317181)
total small RNAs from mouse brain. (brain)		SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR553584(SRX182790)
source: Heart. (Heart)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR060845(GSM561991)
total RNA. (brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		RuiDcrWT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM317182(GSM317182)
control IP small RNAs from mouse brain. (brain)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR037919(GSM510457)
e12p5_rep1. (embryo)		GSM566420(GSM566420)
"Endougenous small RNA from mouse NIH3T3 cell, infected with MHV-68". (fibroblast)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR037911(GSM510448)
newborn_rep4. (total RNA)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGT.................................................2211149.00114.00162.0038.00116.0039.00108.0025.0035.0056.007.0041.0041.0039.0020.0013.0021.0013.0017.0025.0012.0016.0011.0016.008.00-2.0010.003.006.0017.0018.0018.0010.0015.003.0014.0011.004.006.003.0010.001.003.00-8.008.001.003.005.005.005.002.002.005.003.002.002.001.004.001.001.003.003.00-4.00--3.00--2.003.001.003.002.001.002.001.00-2.002.001.00-1.001.00---1.00-1.00--1.001.00---1.00-1.00-2.00-2.001.00---1.00---1.00-1.00-----1.001.00-1.00--1.00---1.00--1.00-1.00---1.001.00----
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGA.................................................221321.00114.00-58.001.0016.00-31.0018.00-34.00--1.008.004.008.0010.001.00-9.004.001.001.002.0015.009.00-3.008.00---2.001.008.00-1.003.00-1.00-5.00----3.002.001.00-1.002.004.00-2.001.002.004.002.001.003.001.00--1.004.00-2.00----2.00--1.001.001.001.00---3.00--1.00-1.00---2.00-------1.00---1.00-1.00--1.00-------1.00--1.00---------1.001.00-------1.00-------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAG..................................................211114.00114.002.0030.002.0020.00-5.008.00--3.001.00-4.009.004.002.001.001.001.00-2.001.00---3.003.001.00---1.00-1.001.001.00--2.00-1.00-------1.00---------------1.00-------1.00---------------------------------------------------------------1.00--------
...............................................................................................................................................................................................TTTACCCCTGTCTGGCCCTCAGT.................................................23178.0031.008.006.005.004.003.009.002.002.005.001.004.00-2.001.001.001.003.001.001.00-2.00-2.00--2.00-----2.00----2.00-1.00--1.00-1.00---1.00-------1.00--1.00---------------------2.00--1.00-------------------------------------------------------------
...............................................................................................................................................................................................TTTACCCCTGTCTGGCCCTCAGA.................................................23135.0031.00-5.00-2.00--4.00--1.00--3.00-----2.002.001.00-1.00-1.00-1.001.00---1.00----1.00---1.00-------------1.00------------4.00----------------1.00-1.00------------------------------------------------------1.00---
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGC.................................................22135.00114.002.005.003.005.002.00-3.00----2.001.00-------1.00-----------------------------3.00--------1.001.00---------------------1.00--------------1.00-1.002.00------------------1.00-------------------------
...............................................................................................................................................................................................TTTACCCCTGTCTGGCCCTCAG..................................................22131.0031.002.003.00-4.00-4.001.00----1.00-4.00---2.001.00---2.00--1.003.001.00--------1.00---------------------------------1.00--------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGAAT...............................................24123.00114.00-----8.001.00-11.00---------------1.00--------2.00---------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGTT................................................23123.00114.002.001.004.004.00---1.00------------2.00---3.001.00---------1.00--2.00--1.00---------------------------------------------------1.00---------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGTA................................................23122.00114.00-5.00-1.00--------1.001.001.001.00--1.00---2.00-1.00-1.001.00--------1.001.00-------1.00------------1.00------------------1.00--------------1.00----------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGAA................................................23118.00114.00-----3.00------1.001.00-1.002.00--1.00---3.00-------1.00-----2.00--1.00-----------------------------------1.00---------------------------------------------1.00----------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCA...................................................20116.0016.00-1.002.001.00--------1.003.00--2.00-----1.00--1.002.00----1.00-----------------1.00-----------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTC....................................................19114.0014.00-------1.00---2.00-----1.00---2.001.00-----------1.00---1.00--------------------------2.00-----------------1.00-------1.00-----------------------------------1.00-----------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGTAA...............................................24111.00114.001.00--2.00--------1.00--1.00-------2.00--1.00--------1.001.00-------------------------------------------------------------------------------1.00----------------------------
...............................................................................................................................................................................................TTTACCCCTGTCTGGCCCTCA...................................................2118.008.00---3.00--1.001.00-----1.00-----------1.00--------------------1.00--------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGAAA...............................................2417.00114.00---1.00--3.00-------1.00------------------------------2.00---------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCATA.................................................2216.0016.00-1.00----1.00-----------2.00-------1.00--------------------------------------------1.00-------------------------------------------------------------------------
.................................................................................................................................................................................................TACCCCTGTCTGGCCCTCAGT.................................................2115.002.00--1.00-------------2.00---1.00-----------------1.00----------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGTTT...............................................2415.00114.00---1.00------1.00--1.00---------------------------------1.00------------------------------------------------------1.00------------------------------------------
..................................................................................................................................................................................................ACCCCTGTCTGGCCCTCAGA.................................................205.000.00------------------------------------------5.00------------------------------------------------------------------------------------------------------
..................................................GTGAGGTCCAGGGCAGGGG..................................................................................................................................................................................................1915.005.00------1.00-----------------------------------4.00------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGATT...............................................2415.00114.00---3.00--1.00--------------------------1.00---------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAAA.................................................2215.0016.00---1.00--1.00------------------------------1.00-------1.00-------------------------------------------1.00-------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGTAT...............................................2414.00114.00--------------------1.00-1.00------------------------------1.00----------------------------------------------------------------------1.00--------------------
...............................................................................................................................................................................................TTTACCCCTGTCTGGCCCTCAGAA................................................2414.0031.00--------------1.00----1.00----1.00-----------------------1.00------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGTAG...............................................2414.00114.00-2.00------------1.00---------------------------------------1.00------------------------------------------------------------------------------------------
...............CGAAAGCTGAAGCACCCCAACATCATC.............................................................................................................................................................................................................................2713.003.00--------------------------------------------------------------3.00----------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCATT.................................................2213.0016.00-------------1.00---------------------1.00-------------------1.00-----------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAA..................................................2113.0016.00---2.00----------------------------------------------------------------------------------------------1.00----------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCT...................................................2012.0014.00-------------------1.00-------------------------------------------------------------------------------------------1.00---------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGTAAA..............................................2512.00114.00---1.00---------------------------------------------------------------------1.00-----------------------------------------------------------------------
.................................................................................................................................................................................................TACCCCTGTCTGGCCCTCAG..................................................2012.002.00-------------------------------------------------------------------------------------------1.00------------------1.00----------------------------------
............................................................................................................................................ATGGCATGGGTAGAAATGTAGGTCCCAGGTACACAAGGCAGATAATTAAGCTTTACCCCTGTCTGGCCCTCAG..................................................7312.002.00---------------------------------------------------------------------------------------------------------2.00---------------------------------------
...............................................................................................................................................................................................TTTACCCCTGTCTGGCCCTCAGTA................................................2412.0031.00---1.00---------------------------------1.00-----------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAATA................................................2312.0016.00---1.00-----------1.00---------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGAGA...............................................2412.00114.00------1.00---------------------------------------------------------------------------1.00--------------------------------------------------------------
.......................................................................................................................................................AGAAATGTAGGTCCCAGGTACACAAGGCA...................................................................................2912.002.00----------------------------------------------------------------------------------------2.00--------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGAT................................................2312.00114.00---------------1.00----------------------------------------1.00----------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................TACTGCATCCTTATGGA........1712.002.00------------------------------------------------------------------------------------------------2.00------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGTTAT..............................................2512.00114.00---1.00-------------------------------------1.00-------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTAAGT.................................................2212.001.00---1.00-----------------------------------1.00---------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................TTTACCCCTGTCTGGCCCTC....................................................2012.002.00-------1.00--------1.00--------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGTTTT..............................................2512.00114.00---2.00---------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................AGAAATGTAGGTCCCAGGTACACAAGG.....................................................................................2712.002.00-----------------------------------------1.00--------------------1.00----------------------------------------------------------------------------------
...................................................................................................................................................GGGTAGAAATGTAGGCACA.................................................................................................192.000.00-------------------------------------------------------------2.00-----------------------------------------------------------------------------------
..................................................GTGAGGTCCAGGGCAGGGGCT................................................................................................................................................................................................2112.002.00----2.00--------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................TTTACCCCTGTCTGGCCCTCAGTAGT..............................................2612.0031.00---------------------------------------------------------------------2.00---------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGAG................................................2312.00114.00----------------------------------------------------2.00--------------------------------------------------------------------------------------------
..................................................................................................................................................................................................ACCCCTGTCTGGCCCTCAGT.................................................202.000.00----------------------1.00----------------------------1.00---------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGTAGT..............................................2512.00114.00---1.00---1.00-----------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGCT................................................2312.00114.00-------1.00-----------------------------1.00-----------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................TTTACCCCTGTCTGGCCCTCAGTTT...............................................2512.0031.00------2.00------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................TACCCCTGTCTGGCCCTCAGA.................................................2112.002.00----------------------------------------------1.00------------------------------------------------------------------------------1.00-------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAT..................................................2112.0016.00---1.00----------------------------1.00----------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCGAC....................................................191.000.00-----------1.00-------------------------------------------------------------------------------------------------------------------------------------
..............TCGAAAGCTGAAGCACCCCAACATCAT..............................................................................................................................................................................................................................2711.001.00-----------------------------------------------------------------------------------------------------------------------------------1.00-------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCTAG.................................................2211.0014.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGAAG...............................................2411.00114.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCTAT.................................................2211.0014.00---1.00---------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................CTTTACCCCTGTCTGGCCCTCAGT.................................................241.000.001.00------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................TTTACCCCTGTCTGGCCCTCAGAT................................................2411.0031.00------------------1.00------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGGA................................................2311.001.00---------------1.00---------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCT.....................................................1811.001.00---------------------1.00---------------------------------------------------------------------------------------------------------------------------
...............CGAAAGCTGAAGCACCCCAACATCAT..............................................................................................................................................................................................................................2611.001.00-------------------------------------------------------------------------------1.00-----------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGTTAA..............................................2511.00114.00----------------------------1.00--------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................TTTACCCCTGTCTGGCCCTCAGTT................................................2411.0031.00---------------1.00---------------------------------------------------------------------------------------------------------------------------------
................................................................AGGGGCTGGGGGTACGCCC....................................................................................................................................................................................191.000.00-----------------------------------------------------------------------------------------------1.00-------------------------------------------------
...............................................................................................................................................................................................TTTACCCCTGTCTGGCCCTCACT.................................................2311.008.00------------1.00------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGGTCCAGGGCAGGGGCTGGGGGT..........................................................................................................................................................................................2711.001.00------------------------------------------------------1.00------------------------------------------------------------------------------------------
.........................................................................................................................................GAAATGGCATGGGTAGAAATGTAGGTC...................................................................................................2711.001.00-------------------------------------------------------------------------------------1.00-----------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGG.................................................2211.001.00------------------------1.00------------------------------------------------------------------------------------------------------------------------
..................................................................GGGCTGGGGGTACCAGCT...................................................................................................................................................................................181.000.00------------------------------------------------------------------------------------------------------------------------------------------1.00------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGAGT...............................................2411.00114.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCCGA.................................................2211.0014.00----------------------------------------------1.00--------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGTGT...............................................2411.00114.00-----------------------------------------------------------------------------------------------------------------1.00-------------------------------
..............TCGAAAGCTGAAGCACCCCAAC...................................................................................................................................................................................................................................2211.001.00-----------------------------------------------------------------------------1.00-------------------------------------------------------------------
...........................................................................................................................................................................................AAGCTTTACCCCTGTCTG..........................................................1811.001.00---------------------------------------------------------------------------------------------------------------------1.00---------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGTAC...............................................2411.00114.00------------------------------------------------------------------------------------1.00------------------------------------------------------------
..............TCGAAAGCTGAAGCACACCA.....................................................................................................................................................................................................................................201.000.00------------------------------------------------------------------------------------------------------------------------------------1.00------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCTCT.................................................2211.0014.00---------1.00---------------------------------------------------------------------------------------------------------------------------------------
.................................................................................TGACACATAGGACTCCCCTCACCTGGGACTAT......................................................................................................................................................3211.001.00------------------------------------------------------------------------------1.00------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAAGT................................................2311.0016.00----------------------------------------------------------------------------------------------1.00--------------------------------------------------
.................................................................................................................................................................................................TACCCCTGTCTGGCCCTCAGTA................................................2211.002.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGTC................................................2311.00114.00---1.00---------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCC......................................................1711.001.00--------------------------------------------------------------------------1.00----------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAGATTT..............................................2511.00114.00----------------------------------------------------------------------------------------------------------1.00--------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCCGC.................................................2211.0014.00--------------------------------------1.00----------------------------------------------------------------------------------------------------------
...............................................................................................................................................................AGGTCCCAGGTACACAAGGCAGAT................................................................................2411.001.00----------------------------------------1.00--------------------------------------------------------------------------------------------------------
.......................................................................................................................................................AGAAATGTAGGTCCCAGGTACACAAGGC....................................................................................2811.001.00-------------------------------------------------------------------------------------1.00-----------------------------------------------------------
....................................................................................................................................................................................................CCCTGTCTGGCCCTCAGT.................................................181.000.00-----------------------------------------1.00-------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAAG.................................................2211.0016.00----------------------------------------------------------------------------------------------1.00--------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTTAGT.................................................2211.001.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCCTAT................................................2311.0014.00---------------------------------------------------------------------------------------1.00---------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCA.....................................................1811.001.00-----------------------------------------1.00-------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGCCCTCAAGA................................................2311.0016.00---1.00---------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................GATAATTAAGCTTTACCCCTGTCTGGCA.......................................................281.000.00--------------------------------------------------------------1.00----------------------------------------------------------------------------------
.................................................................................................................................................................................................TACCCCTGTCTGGCCCTCAGTT................................................2211.002.00----------------1.00--------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTACCCCTGTCTGGC........................................................1530.330.33------------------------------------------------------0.33------------------------------------------------------------------------------------------
..............TCGAAAGCTGAAGC...........................................................................................................................................................................................................................................1480.120.12------------------------------------------------------------------------------------------------------------------------------------------------0.12

Antisense strand
GACATCAAGCATCTTCGAAAGCTGAAGCACCCCAACATCATCACTTTCAAGTGAGGTCCAGGGCAGGGGCTGGGGGTACCATGACACATAGGACTCCCCTCACCTGGGACTATATCCCCTTTCTCAAAGGAGACCCAGAAATGGCATGGGTAGAAATGTAGGTCCCAGGTACACAAGGCAGATAATTAAGCTTTACCCCTGTCTGGCCCTCAGGGGTGTTTGCACACAGGCCCCCTGCTACTGCATCCTTATGGAATTCTGCG
...................................................(((((.(((.((((((((..((((((.(((((...))).))))))))...((((((((((((((.(((..((((....)))).(((....)))...))).....)))))).))))))))....(((((..........))))).))))))))))).)))))...................................................
..................................................51................................................................................................................................................................213................................................
SizePerfect hitTotal NormPerfect NormSRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR206940(GSM723281)
other. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR206941(GSM723282)
other. (brain)		SRR206939(GSM723280)
other. (brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR206942(GSM723283)
other. (brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR306538(GSM750581)
19-24nt. (ago2 brain)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR037907(GSM510443)
brain_rep4. (brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR037904(GSM510440)
brain_rep1. (brain)		mjTestesWT1()
Testes Data. (testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR023848(GSM307157)
mEFsmallrna_rep1. (cell line)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR306528(GSM750571)
19-24nt. (ago2 brain)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		GSM317184(GSM317184)
TRIM32 IP small RNAs from mouse brain. (trim32 brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR037927(GSM510465)
e7p5_rep1. (embryo)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR037909(GSM510446)
newborn_rep2. (total RNA)		RuiDGCR8WT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		GSM317181(GSM317181)
total small RNAs from mouse brain. (brain)		SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR553584(SRX182790)
source: Heart. (Heart)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR060845(GSM561991)
total RNA. (brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		RuiDcrWT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM317182(GSM317182)
control IP small RNAs from mouse brain. (brain)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR037919(GSM510457)
e12p5_rep1. (embryo)		GSM566420(GSM566420)
"Endougenous small RNA from mouse NIH3T3 cell, infected with MHV-68". (fibroblast)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR037911(GSM510448)
newborn_rep4. (total RNA)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
.............................................................................................................................................................................................................................................CTACTGCATCCTTATG.......... 1614.004.00--------------------------------------------------------------------4.00----------------------------------------------------------------------------
.............................................................................................................................................................................................................................................CTACTGCATCCTTATGG......... 1713.003.00-----------------------------------------------------------------3.00-------------------------------------------------------------------------------
.......................GAAGCACCCCAACATCATCACTTTC....................................................................................................................................................................................................................... 2511.001.00---------------------------------1.00---------------------------------------------------------------------------------------------------------------
.......AGCATCTTCGAAAGCTGAAGCACCCCAACAT................................................................................................................................................................................................................................. 3111.001.00----------------------------------------------------------1.00--------------------------------------------------------------------------------------
.................................................................................................................ATCCCCTTTCTCAAAGGAGACCC............................................................................................................................... 2311.001.00------------------------1.00------------------------------------------------------------------------------------------------------------------------
.................AAAGCTGAAGCACCCTGGT................................................................................................................................................................................................................................... 191.000.00-------------------------------------------------------------------------------------------------------------1.00-----------------------------------
...................................................................................................................................................................................................CCCCTGTCTGGCCCTCAGGGGTG............................................. 2311.001.00----------------------------------------1.00--------------------------------------------------------------------------------------------------------
.......................GAAGCACCCCAACATGAG.............................................................................................................................................................................................................................. 181.000.00-----------------------------------------------------------------------------------------------1.00-------------------------------------------------
...................................................................................................................................................................................................................................AGGCCCCCTGCTACTGCATCCTT............. 2311.001.00-----------------------------------------------------1.00-------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................TCAGGGGTGTTTGCATTGG................................... 191.000.00--------------------------------------------------------------------------------------------------------------------------------------1.00----------
...........................................................................................GACTCCCCTCACCTGGGA.......................................................................................................................................................... 1820.500.50----------------------------------------------------------------------------------------------------------------------------------------------0.50--
.........................................................................GGGTACCATGACACATA............................................................................................................................................................................. 1730.330.33-----------------------------------------------------------------------------------------------------------------------------------------------0.33-