ID: uc007xfq.2
GENE: Plxnb2(31)
chr15:88987449-88987665-


(1)
AGO.mut 		(1)
AGO1.ip 		(2)
AGO2.ip 		(6)
B-CELL 		(11)
BRAIN 		(5)
CELL-LINE 		(2)
DCR.mut 		(12)
EMBRYO 		(8)
ESC 		(5)
FIBROBLAST 		(1)
HEART 		(1)
KIDNEY 		(3)
LIVER 		(11)
OTHER 		(1)
OTHER.ip 		(4)
OTHER.mut 		(2)
PIWI.ip 		(2)
PIWI.mut 		(1)
SKIN 		(1)
SPLEEN 		(13)
TESTES 		(1)
UTERUS

Sense strand
AAGCTGTTGTATGCTAAGGAGATCTCTACCTACAAGAAGATGGTGGAGGAGTGAGTGATGTGGAGGAGGGGCTGGGGAATCCCTAAGAGACCCCAGGGTCCAGCAACCCCCTCTTTCCCATGCACTCACCTCCTCCTGTCTCCATCCACACCCCTCTCCCTCTGCAGCTACTACAAGGGCATCAGACAGATGGTGCAGGTCAGCGACCAGGACATGA
..................................................((((((((((.((((((((((.(((((...)))))...((((....)))).......)))))))))).))).)))))))........................................................................................
..................................................51..................................................................................135................................................................................
SizePerfect hitTotal NormPerfect NormSRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR206939(GSM723280)
other. (brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR037923(GSM510461)
e9p5_rep1. (embryo)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		GSM361399(GSM361399)
CGNP_P6_p53--_Ink4c--_rep2. (brain)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		SRR065056(SRR065056)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR073954(GSM629280)
total RNA. (blood)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR206942(GSM723283)
other. (brain)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR206941(GSM723282)
other. (brain)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		GSM361394(GSM361394)
CGNP_P6_wt_rep1. (brain)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)
...............................ACAAGAAGATGGTGGAGGACT.....................................................................................................................................................................2132.000.005.006.00-3.001.00-1.004.003.002.00---4.001.00-------1.00-------------------------1.00------------------------------
.....GTTGTATGCTAAGGAGATCTCT..............................................................................................................................................................................................22132.0032.00-4.00-8.009.00-7.002.00-1.00---1.00-----------------------------------------------------------------
..................................................GTGAGTGATGTGGAGGAGG....................................................................................................................................................19111.0011.00--5.00---------6.00------------------------------------------------------------------
..................................................GTGAGTGATGTGGAGGAGGGGT.................................................................................................................................................2219.006.00--4.00--1.00--------1.00-------1.00------------1.00---------------1.00---------------------------
..................................AGAAGATGGTGGAGGACTA....................................................................................................................................................................197.000.004.00-------------1.00-------1.00-1.00------------------------------------------------------
..................................................GTGAGTGATGTGGAGGAGGGG..................................................................................................................................................2116.006.00--4.00-----------------1.00---------------1.00------------------------------------------
....TGTTGTATGCTAAGGAGATCTCTACC...........................................................................................................................................................................................2616.006.00-----------6.00-------------------------------------------------------------------
..........ATGCTAAGGAGATCTCTACCT..........................................................................................................................................................................................2115.005.00---3.002.00--------------------------------------------------------------------------
..................................................GTGAGTGATGTGGAGGAGGG...................................................................................................................................................2015.005.00-1.003.00------------------------------------1.00---------------------------------------
.............................................................................................................CCTCTTTCCCATGCACTCACCT......................................................................................2215.005.00-----1.00----1.00------------1.00------1.001.00-----------------------------------------------
..................................................GTGAGTGATGTGGAGGAGGGGC.................................................................................................................................................2214.004.00-----------------------------1.00-1.00---------1.00-------------------------1.00-----------
..................................................GTGAGTGATGTGGAGGA......................................................................................................................................................1714.004.00---------------3.00---------1.00-----------------------------------------------------
.............................................................................................................CCTCTTTCCCATGCACTCACCTC.....................................................................................2314.004.00----------2.00----------1.00---------------------------------------------------1.00-----
...........................ACCTACAAGAAGATGGTGGAGGACT.....................................................................................................................................................................254.000.00-3.00------1.00----------------------------------------------------------------------
...............................ACAAGAAGATGGTGGAGGACTAC...................................................................................................................................................................234.000.00----1.00--2.00-----------------------------------------------------1.00-----------------
..................................................GTGAGTGATGTGGAGGAGGGGCTG...............................................................................................................................................2414.004.00------------------1.00----1.00--------------------------1.00--------------1.00-------------
...............................ACAAGAAGATGGTGGAGGACTT....................................................................................................................................................................224.000.00-----------------4.00-------------------------------------------------------------
.............................................................................................................CCTCTTTCCCATGCACTCACC.......................................................................................2113.003.00-----1.00--------------1.00---------------------------------------1.00------------------
...............................ACAAGAAGATGGTGGAGGAC......................................................................................................................................................................203.000.00-2.00-------1.00---------------------------------------------------------------------
..................................................GTGAGTGATGTGGAGGAGGGCT.................................................................................................................................................2213.005.001.00----2.00-------------------------------------------------------------------------
.............................................................................................................CCTCTTTCCCATGCACTCACCC......................................................................................2213.003.00-----2.00----------------------------1.00--------------------------------------------
..................................................GTGAGTGATGTGGAGGAG.....................................................................................................................................................1813.003.00------------------------------------1.00----1.00-----1.00-------------------------------
...............AAGGAGATCTCTACCTACAAGAAGATG...............................................................................................................................................................................2713.003.00----------------3.00--------------------------------------------------------------
............................................................................................................................................................................ACAAGGGCATCAGACAGAT..........................1922.502.50------0.50--1.00----------------1.00----------------------------------------------------
.................................AAGAAGATGGTGGAGGA.......................................................................................................................................................................1742.252.25--1.75--------0.50-------------------------------------------------------------------
..............................................................................................................CTCTTTCCCATGCACTCACCTCT....................................................................................232.000.00-------------------------------------2.00-----------------------------------------
..................................................................................................................................................................................................GCAGGTCAGCGACCAGGAC....1912.002.00------1.00----1.00-------------------------------------------------------------------
..............................TACAAGAAGATGGTGGAGGACT.....................................................................................................................................................................222.000.002.00------------------------------------------------------------------------------
.......TGTATGCTAAGGAGATCTCT..............................................................................................................................................................................................2012.002.00---1.00----------------------1.00----------------------------------------------------
.......TGTATGCTAAGGAGAAAA................................................................................................................................................................................................182.000.00-----------------------------------------------------1.00---------------------1.00---
..................................................GTGAGTGATGTGGAGGAGGGGTA................................................................................................................................................2312.006.00--------------------1.00-----------------------------------------------------1.00----
.............................................................................................................CCTCTTTCCCATGCACTCACCTCT....................................................................................2412.004.00----------------------------------------------------1.00--1.00-----------------------
..................GAGATCTCTACCTACAAGAAGATGGTG............................................................................................................................................................................2712.002.00----------------2.00--------------------------------------------------------------
...............................ACAAGAAGATGGTGGAGGACTA....................................................................................................................................................................222.000.002.00------------------------------------------------------------------------------
..................................................GTGAGTGATGTGGAGGAGGGGTT................................................................................................................................................2312.006.00-----1.00----------------------------------------------------1.00--------------------
..................................................GTGAGTGATGTGGAGGAGGGGAA................................................................................................................................................2312.006.00--------2.00----------------------------------------------------------------------
.....GTTGTATGCTAAGGAGATCTC...............................................................................................................................................................................................2112.002.00-2.00-----------------------------------------------------------------------------
..........................................................................................................CCCCCTCTTTCCCATGCACTCACC.......................................................................................2412.002.00------------------------------------------2.00------------------------------------
.......................CTCTACCTACAAGAAGATGGT.............................................................................................................................................................................2112.002.00---------------2.00---------------------------------------------------------------
...............................................................................................................................................................................................GGTGCAGGTCAGCGACCAGGAC....2212.002.00---1.00-----1.00---------------------------------------------------------------------
................................CAAGAAGATGGTGGAGGACTA....................................................................................................................................................................212.000.001.00-------------1.00----------------------------------------------------------------
..................................................GTGAGTGATGTGGAGGAGGGCAA................................................................................................................................................2312.005.00---------------------------------------1.00-----------------------------1.00---------
..................................................GTGAGTGATGTGGAGGAGGGGCTGG..............................................................................................................................................2512.002.00------------------1.00------1.00-----------------------------------------------------
.................................AAGAAGATGGTGGAGGACT.....................................................................................................................................................................1941.752.250.500.75-0.25----0.25----------------------------------------------------------------------
..................................................GTGAGTGATGTGGAGGAGGGATAT...............................................................................................................................................2411.005.00-----------------------1.00-------------------------------------------------------
................................CAAGAAGATGGTGGAGGACTAC...................................................................................................................................................................221.000.001.00------------------------------------------------------------------------------
..................................AGAAGATGGTGGAGGACT.....................................................................................................................................................................181.000.001.00------------------------------------------------------------------------------
.........................................................................................................................................................................ACTACAAGGGCATCAGACAGATG.........................2311.001.00----------------------------1.00--------------------------------------------------
..GCTGTTGTATGCTAAGGAGATCTCTACCTACAAGA....................................................................................................................................................................................3511.001.00--------------------------------------------1.00----------------------------------
.............................................................................................................CCTCTTTCCCATGCACTCAC........................................................................................2011.001.00-----1.00-------------------------------------------------------------------------
..................................................GTGAGTGATGTGGAGGAA.....................................................................................................................................................1811.004.00-------------1.00-----------------------------------------------------------------
............................................................................................................................................................................ACAAGGGCATCAGACAGATGTT.......................221.000.00-1.00-----------------------------------------------------------------------------
.AGCTGTTGTATGCTAAGGAGAT..................................................................................................................................................................................................2211.001.00-------1.00-----------------------------------------------------------------------
..................GAGATCTCTACCTACAAGAAGAT................................................................................................................................................................................2311.001.00-------------------1.00-----------------------------------------------------------
..................................................GTGAGTGATGTGGAGGAGGGCAT................................................................................................................................................2311.005.00--------------------1.00----------------------------------------------------------
.........TATGCTAAGGAGATCTCTACCTA.........................................................................................................................................................................................2311.001.00---------------------1.00---------------------------------------------------------
..................................................GTGAGTGATGTGGAGGACG....................................................................................................................................................1911.004.00------------1.00------------------------------------------------------------------
...............................ACAAGAAGATGGTGGAGGATTT....................................................................................................................................................................221.000.00-----------------1.00-------------------------------------------------------------
.............................................................................................................CCTCTTTCCCATGCACTCACCA......................................................................................2211.003.00---------------------------------------------------------------1.00---------------
..................................................GTGAGTGATGTGGAGGAGGGGCTAAAA............................................................................................................................................2711.001.00--------------1.00----------------------------------------------------------------
..................................................................................................................................................................................................GCAGGTCAGCGACCAGGACATGATT251.000.00--------------------------------------------------------1.00----------------------
...................................................TGAGTGATGTGGAGGAGGGG..................................................................................................................................................2011.001.00----------1.00--------------------------------------------------------------------
..................................................GTGAGTGATGTGGAGGAGGGT..................................................................................................................................................2111.005.00----------------------------------1.00--------------------------------------------
.............................................................................................................CCTCTTTCCCATGCACTCACCTA.....................................................................................2311.005.00----1.00--------------------------------------------------------------------------
..................................................GTGAGTGATGTGGAGGAGGGAA.................................................................................................................................................2211.005.00------------------------------------------------------1.00------------------------
...............................ACAAGAAGATGGTGGAGGACTAT...................................................................................................................................................................231.000.001.00------------------------------------------------------------------------------
..................................................GTGAGTGATGTGGAGGAGGGGTTAA..............................................................................................................................................2511.006.00----------------------1.00--------------------------------------------------------
..............................................................................................................................................................................................TGGTGCAGGTCAGCGACCAGGA.....2211.001.00-------------------------------------------------1.00-----------------------------
...............................................................................................................TCTTTCCCATGCACTCACCT......................................................................................2011.001.00--------1.00----------------------------------------------------------------------
.........................................................................................................................................................................................ACAGATGGTGCAGGTCAGCGA...........2111.001.00--------1.00----------------------------------------------------------------------
..................................................GTGAGTGATGTGGAGGAGGGGAG................................................................................................................................................2311.006.00----------------------------------------1.00--------------------------------------
............................................................................................................................................................................ACAAGGGCATCAGACAGATGG........................2111.001.00----------------------------1.00--------------------------------------------------
................................................................................................................CTTTCCCATGCACTCACCTCA....................................................................................211.000.00---------------------1.00---------------------------------------------------------
...........................ACCTACAAGAAGATGGTGGAGGACTA....................................................................................................................................................................261.000.00-----------------------------------1.00-------------------------------------------
..................................................GTGAGTGATGTGGAGGAGGGGTATT..............................................................................................................................................2511.006.00-----------------------1.00-------------------------------------------------------
..................................................GTGAGTGATGTGGAGGAGGGGGT................................................................................................................................................2311.006.00-----1.00-------------------------------------------------------------------------
........GTATGCTAAGGAGATCTCTACC...........................................................................................................................................................................................2211.001.00-------------------1.00-----------------------------------------------------------
.......................................................................................................CAACCCCCTCTTTCCCATGCACTCACCTCCTCCTGTCTCCATCCACACCCCTCTCCCTCTGCAGAA................................................661.000.00---------------------------1.00---------------------------------------------------
..................................................GTGAGTGATGTGGAGGAGGGGG.................................................................................................................................................2211.006.00-----1.00-------------------------------------------------------------------------
..................................................GTGAGTGATGTGGAGGAGGGGCT................................................................................................................................................2311.001.00------------------1.00------------------------------------------------------------
.......................................................TGATGTGGAGGAGGGGCTGGGGAA..........................................................................................................................................2411.001.00------------------1.00------------------------------------------------------------
...............................ACAAGAAGATGGTGGAGGGCT.....................................................................................................................................................................211.000.00-1.00-----------------------------------------------------------------------------
...............................ACAAGAAGATGGTGGAGGACTAA...................................................................................................................................................................231.000.001.00------------------------------------------------------------------------------
.......................................................................................................................ATGCACTCACCTCCTCCTGTCTCCATCCACACCCCTCTCCCTCTGCAGAA................................................501.000.00---------------------------1.00---------------------------------------------------
.............................................................................................................CCTCTTTCCCATGCACTCACCGCA....................................................................................2411.003.00-----1.00-------------------------------------------------------------------------
........................................................................................GACCCCAGGGTCCAGCAACCCCCTCTTTCCCATGCACTCACCTCCTCCTGTCTCCATCCACACCCCTCTCCCTCTGCA...................................................7811.001.00---------------------------1.00---------------------------------------------------
................AGGAGATCTCTACCTACAAGAAGAT................................................................................................................................................................................2511.001.00-------------------1.00-----------------------------------------------------------
...............AAGGAGATCTCTACCTACAAGAAGAT................................................................................................................................................................................2611.001.00---------1.00---------------------------------------------------------------------
...............................................................................................................TCTTTCCCATGCACTCACCTCA....................................................................................221.000.00----------1.00--------------------------------------------------------------------
..............................TACAAGAAGATGGTGGAGGACTAC...................................................................................................................................................................241.000.001.00------------------------------------------------------------------------------
.............................................................................................................CCTCTTTCCCATGCACTCACCCAT....................................................................................2411.003.00----------1.00--------------------------------------------------------------------
.....GTTGTATGCTAAGGAGATCT................................................................................................................................................................................................2011.001.00---------1.00---------------------------------------------------------------------
......................TCTCTACCTACAAGAAGATGGTG............................................................................................................................................................................2311.001.00---------------------1.00---------------------------------------------------------
.....GTTGTATGCTAAGGAGATC.................................................................................................................................................................................................1911.001.00-----------------------------------------------------------------------1.00-------
........................TCTACCTACAAGAAGATGGTGGAGGACT.....................................................................................................................................................................281.000.00--------------------------------------------------------------------1.00----------
................................CAAGAAGATGGTGGAGGACT.....................................................................................................................................................................201.000.00------------------------1.00------------------------------------------------------
.....................ATCTCTACCTACAAGAAGATGGTGGAGGA.......................................................................................................................................................................2911.001.00----------------------------------------------1.00--------------------------------
........................................................................................................AACCCCCTCTTTCCCATGCACT...........................................................................................2211.001.00-------------------------------------------1.00-----------------------------------
...........................................................................................................................................................................................AGATGGTGCAGGTCAGCGACCA........2211.001.00------1.00------------------------------------------------------------------------
..............................................................................................................CTCTTTCCCATGCACTCACCCT.....................................................................................221.000.00----------------------------------------------------------------------1.00--------
...............................................................................................................................................................................AGGGCATCAGACAGAGTG........................181.000.00--------------------------------------1.00----------------------------------------
.............................................................................................................................................................................................ATGGTGCAGGTCAGCGAC..........1811.001.00-------1.00-----------------------------------------------------------------------
........................TCTACCTACAAGAAGATGGTGGA..........................................................................................................................................................................2311.001.00---------------1.00---------------------------------------------------------------
....................................................................................................................................................................................................AGGTCAGCGACCAGGACAT..1911.001.00-------1.00-----------------------------------------------------------------------
.............................................................................................................CCTCTTTCCCATGCACTCACCCC.....................................................................................2311.003.00----------1.00--------------------------------------------------------------------
..................................................GTGAGTGATGTGGAGGAGGGGCTGAA.............................................................................................................................................2611.004.00-------------------------1.00-----------------------------------------------------
.............................................................................................................................................CCATCCACACCCCTCTCCCTC.......................................................2111.001.00--------------------------------1.00----------------------------------------------
.................................................................................................................TTTCCCATGCACTCACCTCCTCCTG...............................................................................2511.001.00--------------------------------------------------------------1.00----------------
.........................................................................................................................................................................ACTACAAGGGCATCAGACAGAAAAA.......................251.000.00------------------------------------------------------------------------1.00------
..............................................................................ATCCCTAAGAGACCCCAGGGTCCAGCAACCCCC..........................................................................................................3311.001.00------------------------------------------------------------------1.00------------
.............................................................................................................................................................................................ATGGTGCAGGTCAGCGACCAGGACAT..2611.001.00--------------------------------1.00----------------------------------------------
.....GTTGTATGCTAAGGAGATCTCTACCT..........................................................................................................................................................................................2611.001.00---1.00---------------------------------------------------------------------------
..................................................GTGAGTGATGTGGAGGAGGGTAT................................................................................................................................................2311.005.00----------------------------------------1.00--------------------------------------
..............................................................................................................................................................................AAGGGCATCAGACAGATGGTGC.....................2211.001.00------1.00------------------------------------------------------------------------
..................................................GTGAGTGATGTGGAGGAGGGGCTGGG.............................................................................................................................................2611.001.00------------------------1.00------------------------------------------------------
........................................................................................................................................................................................................CAGCGACCAGGACATGA1711.001.00----1.00--------------------------------------------------------------------------
...................................GAAGATGGTGGAGGACTA....................................................................................................................................................................181.000.00--------------1.00----------------------------------------------------------------
.............................................................................................................CCTCTTTCCCATGCACTCATCTC.....................................................................................231.000.00----------1.00--------------------------------------------------------------------
......................................................................................................................................................CCCCTCTCCCTCTGCAG..................................................1720.500.50-----------------------------------------------------------------------------0.50-
.................................AAGAAGATGGTGGAGGACTA....................................................................................................................................................................2040.502.250.25-----------------------0.25------------------------------------------------------
..............TAAGGAGATCTCTACC...........................................................................................................................................................................................1620.500.50----------------------------0.50--------------------------------------------------
.......................................................................................................................................................................................AGACAGATGGTGCAGG..................1640.250.25------------------------------------------------------------------------------0.25
..................................................GTGAGTGATGTGGAGG.......................................................................................................................................................1650.200.20-----------------------------0.20-------------------------------------------------

Antisense strand
AAGCTGTTGTATGCTAAGGAGATCTCTACCTACAAGAAGATGGTGGAGGAGTGAGTGATGTGGAGGAGGGGCTGGGGAATCCCTAAGAGACCCCAGGGTCCAGCAACCCCCTCTTTCCCATGCACTCACCTCCTCCTGTCTCCATCCACACCCCTCTCCCTCTGCAGCTACTACAAGGGCATCAGACAGATGGTGCAGGTCAGCGACCAGGACATGA
..................................................((((((((((.((((((((((.(((((...)))))...((((....)))).......)))))))))).))).)))))))........................................................................................
..................................................51..................................................................................135................................................................................
SizePerfect hitTotal NormPerfect NormSRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR206939(GSM723280)
other. (brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR037923(GSM510461)
e9p5_rep1. (embryo)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		GSM361399(GSM361399)
CGNP_P6_p53--_Ink4c--_rep2. (brain)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		SRR065056(SRR065056)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR073954(GSM629280)
total RNA. (blood)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR206942(GSM723283)
other. (brain)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR206941(GSM723282)
other. (brain)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		GSM361394(GSM361394)
CGNP_P6_wt_rep1. (brain)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)
..................................................GTGAGTGATGTGGAGGAG..................................................................................................................................................... 1812.002.00---------------------------------------------------------1.00------------------1.00--
.........................................................................................................................................................................................ACAGATGGTGCAGGTCAGT............. 191.000.00---------------------------------1.00---------------------------------------------
............GCTAAGGAGATCTCTACCTACAAGAA................................................................................................................................................................................... 2611.001.00------------------1.00------------------------------------------------------------
...CTGTTGTATGCTAAGTGA.................................................................................................................................................................................................... 181.000.00--------------------------------------1.00----------------------------------------
...........................................................................................................................................CTCCATCCACACCCCTCCC........................................................... 191.000.00----------------------------------------------------------------1.00--------------
................................................................................................................................................TCCACACCCCTCTCCCATTC..................................................... 201.000.00--------------------------1.00----------------------------------------------------
..............................................................................................................................................................CCTCTGCAGCTACTACAAGGGCATCA................................. 2611.001.00-----------------------------1.00-------------------------------------------------
.................................................................................................................................................CCACACCCCTCTCCCTCGGTT................................................... 211.000.00------------------------------1.00------------------------------------------------
........................................................GATGTGGAGGAGGGGGTC............................................................................................................................................... 181.000.00-----------------------------------------------------------1.00-------------------
....................................................................................................................................................CACCCCTCTCCCTCTATTC.................................................. 191.000.00---------------------------------------------1.00---------------------------------
......................................................................................................................................................CCCCTCTCCCTCTGCCGCC................................................ 191.000.00---------------------------------1.00---------------------------------------------